assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475955.1_45889_E01	NZ_LS483432	Streptococcus pyogenes strain NCTC13745 chromosome 1	1	117850-117946	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	GCTAGATGGTGAAGAAGTCCCAGAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|222aa|down_8|NZ_LS483432.1_130800_131466_-	NA|257aa|up_9|NZ_LS483432.1_108167_108938_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|356aa|up_8|NZ_LS483432.1_108985_110053_-	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase	NA|98aa|up_7|NZ_LS483432.1_110508_110802_+	pfam15513, DUF4651, Domain of unknown function (DUF4651)	NA|106aa|up_6|NZ_LS483432.1_110798_111116_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_5|NZ_LS483432.1_111133_111760_+	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|132aa|up_4|NZ_LS483432.1_111911_112307_+	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|214aa|up_3|NZ_LS483432.1_112560_113202_-	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|326aa|up_2|NZ_LS483432.1_113221_114199_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|291aa|up_1|NZ_LS483432.1_114185_115058_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|498aa|up_0|NZ_LS483432.1_115204_116698_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|283aa|down_0|NZ_LS483432.1_119073_119922_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|754aa|down_1|NZ_LS483432.1_120207_122469_+	NF033396, pilus_ancill_1, pilus ancillary protein 1	NA|174aa|down_2|NZ_LS483432.1_122465_122987_+	TIGR02227, Inactive_signal_peptidase_IA	NA|350aa|down_3|NZ_LS483432.1_123008_124058_+	TIGR03786, strep_pil_rpt, streptococcal pilin isopeptide linkage domain	NA|242aa|down_4|NZ_LS483432.1_124073_124799_+	TIGR03064, sortase_srtB, sortase, SrtB family	NA|196aa|down_5|NZ_LS483432.1_124815_125403_+	TIGR03786, strep_pil_rpt, streptococcal pilin isopeptide linkage domain	NA|402aa|down_6|NZ_LS483432.1_125561_126767_-	TIGR04094, AraC_family_transcriptional_regulator, YSIRK-targeted surface antigen transcriptional regulator	NA|1126aa|down_7|NZ_LS483432.1_127157_130535_+	pfam05738, Cna_B, Cna protein B-type domain	NA|222aa|down_8|NZ_LS483432.1_130800_131466_-	NA	NA|469aa|down_9|NZ_LS483432.1_131818_133225_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]
GCF_900475955.1_45889_E01	NZ_LS483432	Streptococcus pyogenes strain NCTC13745 chromosome 1	2	841718-842018	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-C,Type II-B,Type II-A	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACT,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACT,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	37,37,36	0	0	NA	NA	II-A:II-A:II-A	3,4,4	4	TypeII-C,TypeII-B,TypeII-A	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|NZ_LS483432.1_831179_831821_+,NA	NA|452aa|up_9|NZ_LS483432.1_829700_831056_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_LS483432.1_831179_831821_+	NA	NA|377aa|up_7|NZ_LS483432.1_831883_833014_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_LS483432.1_833023_833776_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_LS483432.1_833775_834540_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_LS483432.1_834539_835172_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_LS483432.1_835649_839756_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_LS483432.1_839755_840625_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_LS483432.1_840621_840963_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_LS483432.1_840952_841615_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|NZ_LS483432.1_842660_844493_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|424aa|down_1|NZ_LS483432.1_844836_846108_+	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger	NA|146aa|down_2|NZ_LS483432.1_846307_846745_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_LS483432.1_846874_847894_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_LS483432.1_848100_848526_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_LS483432.1_848544_849036_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_LS483432.1_849052_849862_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_LS483432.1_849858_850686_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_LS483432.1_850821_852471_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_LS483432.1_852474_853263_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_900475955.1_45889_E01	NZ_LS483432	Streptococcus pyogenes strain NCTC13745 chromosome 1	3	1038068-1038169	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_LS483432.1_1045999_1046785_+	NA|83aa|up_9|NZ_LS483432.1_1025784_1026033_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_LS483432.1_1026395_1028714_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_LS483432.1_1029242_1030565_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_LS483432.1_1030684_1031920_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_LS483432.1_1032289_1033063_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_LS483432.1_1033432_1034269_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_LS483432.1_1034284_1034914_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_LS483432.1_1034923_1035565_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_LS483432.1_1035671_1036007_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_LS483432.1_1036202_1038017_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_LS483432.1_1038192_1038750_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_LS483432.1_1038967_1040470_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_LS483432.1_1040532_1041546_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_LS483432.1_1041625_1044736_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_LS483432.1_1044920_1045292_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_LS483432.1_1045291_1045990_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_LS483432.1_1045999_1046785_+	NA	NA|205aa|down_7|NZ_LS483432.1_1046915_1047530_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|209aa|down_8|NZ_LS483432.1_1048263_1048890_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_LS483432.1_1049146_1051411_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_900475955.1_45889_E01	NZ_LS483432	Streptococcus pyogenes strain NCTC13745 chromosome 1	4	1274444-1275137	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	10,10,10	10	TypeI-U,TypeI-U?,TypeI-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|50aa|up_9|NZ_LS483432.1_1267211_1267361_-,NA|64aa|up_7|NZ_LS483432.1_1268132_1268324_-,NA|174aa|up_4|NZ_LS483432.1_1269883_1270405_+,NA	NA|50aa|up_9|NZ_LS483432.1_1267211_1267361_-	NA	NA|243aa|up_8|NZ_LS483432.1_1267393_1268122_-	COG3561, COG3561, Phage anti-repressor protein [Transcription]	NA|64aa|up_7|NZ_LS483432.1_1268132_1268324_-	NA	NA|120aa|up_6|NZ_LS483432.1_1269119_1269479_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|127aa|up_5|NZ_LS483432.1_1269492_1269873_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|174aa|up_4|NZ_LS483432.1_1269883_1270405_+	NA	NA|385aa|up_3|NZ_LS483432.1_1270523_1271678_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|369aa|up_2|NZ_LS483432.1_1271788_1272895_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_LS483432.1_1272937_1273561_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_LS483432.1_1273573_1274284_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_LS483432.1_1275285_1275579_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_LS483432.1_1275589_1276615_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_LS483432.1_1276611_1277286_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_LS483432.1_1277287_1278136_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NZ_LS483432.1_1278140_1280036_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|NZ_LS483432.1_1280035_1280764_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NZ_LS483432.1_1280896_1283305_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NZ_LS483432.1_1283458_1286107_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NZ_LS483432.1_1286108_1286672_-	pfam13238, AAA_18, AAA domain	NA|132aa|down_9|NZ_LS483432.1_1287272_1287668_-	PRK07758, PRK07758, hypothetical protein; Provisional
