assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475875.1_47297_B01	NZ_LS483425	Streptococcus pyogenes strain NCTC13737 chromosome 1	1	569437-569732	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	Type I-U, Type I-U?,Type I-C	GTCTCACCCTTCATGGGTGAGTGGATTGAAA,GTCTCACCCTTCATGGGTGAGTGGATTGAAAT,GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	31,32,32	0	0	NA	NA	I-C:I-C:I-C	4,4,4	4	TypeI-U,TypeI-U?,TypeI-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	NA|183aa|up_8|NZ_LS483425.1_557901_558450_+,NA	NA|136aa|up_9|NZ_LS483425.1_557492_557900_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|183aa|up_8|NZ_LS483425.1_557901_558450_+	NA	NA|884aa|up_7|NZ_LS483425.1_558463_561115_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|NZ_LS483425.1_561268_563677_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|NZ_LS483425.1_563809_564538_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|NZ_LS483425.1_564537_566433_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|NZ_LS483425.1_566437_567286_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|NZ_LS483425.1_567287_567962_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_LS483425.1_567958_568984_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_LS483425.1_568994_569288_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|NZ_LS483425.1_569891_570602_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|NZ_LS483425.1_570614_571238_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|NZ_LS483425.1_571280_572387_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|NZ_LS483425.1_572474_573215_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|NZ_LS483425.1_573211_574945_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|NZ_LS483425.1_575017_576097_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|NZ_LS483425.1_576110_576827_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|NZ_LS483425.1_576992_577466_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|NZ_LS483425.1_577607_578288_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|NZ_LS483425.1_578561_579797_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCF_900475875.1_47297_B01	NZ_LS483425	Streptococcus pyogenes strain NCTC13737 chromosome 1	2	1024379-1024875	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	Type II-B,Type II-C,Type II-A	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	7,7,6	7	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	NA,NA|214aa|down_8|NZ_LS483425.1_1034772_1035414_-	NA|263aa|up_9|NZ_LS483425.1_1013276_1014065_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|550aa|up_8|NZ_LS483425.1_1014068_1015718_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_7|NZ_LS483425.1_1015853_1016681_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_6|NZ_LS483425.1_1016677_1017487_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_5|NZ_LS483425.1_1017503_1017995_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_4|NZ_LS483425.1_1018013_1018439_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_3|NZ_LS483425.1_1018646_1019666_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_2|NZ_LS483425.1_1019794_1020232_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|403aa|up_1|NZ_LS483425.1_1020417_1021626_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_0|NZ_LS483425.1_1021902_1023735_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	csn2|221aa|down_0|NZ_LS483425.1_1024977_1025640_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_LS483425.1_1025629_1025971_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_LS483425.1_1025967_1026837_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|NZ_LS483425.1_1026836_1030943_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|NZ_LS483425.1_1031421_1032054_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NZ_LS483425.1_1032053_1032818_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NZ_LS483425.1_1032817_1033570_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NZ_LS483425.1_1033579_1034710_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|NZ_LS483425.1_1034772_1035414_-	NA	NA|452aa|down_9|NZ_LS483425.1_1035537_1036893_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_900475875.1_47297_B01	NZ_LS483425	Streptococcus pyogenes strain NCTC13737 chromosome 1	3	1622626-1622793	3	PILER-CR	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	Orphan	TCACCGCGCTCACCCGTTTCACCTTTTTCGCCT	33	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	NA,NA	NA|250aa|up_9|NZ_LS483425.1_1607673_1608423_-	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional	NA|122aa|up_8|NZ_LS483425.1_1608641_1609007_-	PRK06531, yajC, preprotein translocase subunit YajC; Validated	NA|125aa|up_7|NZ_LS483425.1_1609122_1609497_-	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative	NA|1166aa|up_6|NZ_LS483425.1_1609611_1613109_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|538aa|up_5|NZ_LS483425.1_1613306_1614920_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|378aa|up_4|NZ_LS483425.1_1615048_1616182_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|283aa|up_3|NZ_LS483425.1_1616479_1617328_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|433aa|up_2|NZ_LS483425.1_1617667_1618966_+	pfam02821, Staphylokinase, Staphylokinase/Streptokinase family	NA|148aa|up_1|NZ_LS483425.1_1619063_1619507_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|740aa|up_0|NZ_LS483425.1_1619521_1621741_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|161aa|down_0|NZ_LS483425.1_1623654_1624137_+	PRK02551, PRK02551, flavoprotein NrdI; Provisional	NA|273aa|down_1|NZ_LS483425.1_1624530_1625349_-	cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins	NA|729aa|down_2|NZ_LS483425.1_1625431_1627618_-	TIGR02003, PTS_system_glucose-specific_IIBC_component, PTS system, IIBC component	NA|250aa|down_3|NZ_LS483425.1_1627973_1628723_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|318aa|down_4|NZ_LS483425.1_1628722_1629676_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|157aa|down_5|NZ_LS483425.1_1629746_1630217_-	pfam11217, DUF3013, Protein of unknown function (DUF3013)	NA|586aa|down_6|NZ_LS483425.1_1630416_1632174_+	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|189aa|down_7|NZ_LS483425.1_1632206_1632773_+	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|423aa|down_8|NZ_LS483425.1_1632805_1634074_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|234aa|down_9|NZ_LS483425.1_1634645_1635347_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain
GCF_900475875.1_47297_B01	NZ_LS483425	Streptococcus pyogenes strain NCTC13737 chromosome 1	4	1645456-1645676	4	PILER-CR	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	Orphan	CTGGAGCTGCTGGAGTTGATGGAGATGGGGTTTCCTCAGAAGAAGC	46	1	1	1645623-1645657	NZ_LS483425.1_1645677-1645711	NA	2	2	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,RT,csn2,cas9,csm6,DinG	NA,NA|84aa|down_5|NZ_LS483425.1_1656887_1657139_-	NA|423aa|up_9|NZ_LS483425.1_1632805_1634074_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|234aa|up_8|NZ_LS483425.1_1634645_1635347_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|543aa|up_7|NZ_LS483425.1_1636076_1637705_+	cd08518, PBP2_NikA_DppA_OppA_like_19, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|326aa|up_6|NZ_LS483425.1_1637817_1638795_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|up_5|NZ_LS483425.1_1638791_1639613_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|268aa|up_4|NZ_LS483425.1_1639624_1640428_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|209aa|up_3|NZ_LS483425.1_1640411_1641038_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|67aa|up_2|NZ_LS483425.1_1641117_1641318_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|824aa|up_1|NZ_LS483425.1_1641487_1643959_-	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|307aa|up_0|NZ_LS483425.1_1643971_1644892_-	cd01017, AdcA, Metal binding protein AdcA	NA|1182aa|down_0|NZ_LS483425.1_1646576_1650122_-	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|355aa|down_1|NZ_LS483425.1_1650456_1651521_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|407aa|down_2|NZ_LS483425.1_1651729_1652950_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|416aa|down_3|NZ_LS483425.1_1653173_1654421_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|534aa|down_4|NZ_LS483425.1_1654610_1656212_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|84aa|down_5|NZ_LS483425.1_1656887_1657139_-	NA	NA|542aa|down_6|NZ_LS483425.1_1657216_1658842_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|463aa|down_7|NZ_LS483425.1_1658943_1660332_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|down_8|NZ_LS483425.1_1660328_1660982_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_9|NZ_LS483425.1_1661075_1662293_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB
