The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483407	Streptococcus pyogenes strain NCTC13744 chromosome 1	1808803	36637	48950	1808803		Synechococcus_phage(28.57%)	8	NA	NA
WP_111674410.1|36637_40363_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.2	1.7e-39
WP_014635215.1|40523_41978_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	1.4e-53
WP_111674412.1|42005_43028_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	41.8	3.1e-63
WP_111674414.1|43195_43750_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	3.1e-25
WP_111674416.1|43933_45481_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	4.4e-45
WP_111674418.1|45538_46663_-	SH3 domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	5.9e-07
WP_030127618.1|46915_48181_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_002987716.1|48458_48950_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
NZ_LS483407	Streptococcus pyogenes strain NCTC13744 chromosome 1	1808803	334679	433773	1808803	bacteriocin,tRNA,protease,transposase	Streptococcus_phage(20.69%)	101	NA	NA
WP_010921930.1|334679_335315_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	63.4	1.2e-65
WP_111674484.1|335332_336208_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	43.8	4.5e-63
WP_002985838.1|336870_337194_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
WP_014635308.1|337198_338062_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
WP_002985833.1|338088_338481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054223.1|338527_339157_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_011284536.1|339454_339811_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
WP_111674485.1|339884_340712_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.5	3.8e-128
WP_168429873.1|340945_342127_+	L-lactate oxidase	NA	NA	NA	NA	NA
WP_111674487.1|342393_347334_+|protease	CXC chemokine-degrading serine protease SpyCEP	protease	NA	NA	NA	NA
WP_010921939.1|348105_348813_+	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_111674488.1|349052_351053_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	35.3	1.0e-86
WP_111674489.1|351547_352561_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	54.0	1.4e-97
WP_002990870.1|352564_353053_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
WP_111674490.1|353019_355200_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	1.6e-170
WP_111674491.1|355406_356159_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
WP_111674492.1|356616_357264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111674493.1|357359_357848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021340750.1|358035_358287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111674495.1|358381_359014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002993880.1|359691_360012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010921949.1|360324_361023_-	streptococcal pyrogenic exotoxin SpeJ	NA	NA	NA	NA	NA
WP_111674496.1|361270_361936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002990844.1|362294_362531_+	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
WP_021733429.1|362523_363222_+	3-oxoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	26.0	1.1e-11
WP_111674497.1|363297_364257_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002993065.1|364589_365927_+	MFS transporter	NA	NA	NA	NA	NA
WP_111674498.1|366099_367482_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
WP_002990829.1|367512_368067_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_002990826.1|368066_368318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_030126996.1|368337_369033_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_076639592.1|369183_369525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023610043.1|369623_370271_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_004218965.1|370416_371349_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002985780.1|371412_372138_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
WP_011017448.1|372138_372993_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002985776.1|373140_373947_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
WP_063812197.1|374163_376569_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
WP_010921962.1|376638_376992_-	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
WP_002990800.1|377235_377661_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_002985768.1|377766_378456_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_002985765.1|378778_379507_+	UMP kinase	NA	NA	NA	NA	NA
WP_002985763.1|379535_380093_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_011106872.1|380201_381059_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002990794.1|381131_381641_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002985757.1|381637_381853_+	YozE family protein	NA	NA	NA	NA	NA
WP_111674499.1|382008_383178_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.5e-16
WP_111674500.1|383491_385264_+	oleate hydratase	NA	NA	NA	NA	NA
WP_010921967.1|385422_386475_+	PhoH family protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
WP_111674501.1|386520_387096_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_021340735.1|387254_387752_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_002985746.1|387732_388140_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_111674502.1|388259_389156_+	GTPase Era	NA	NA	NA	NA	NA
WP_111674503.1|389176_389653_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_014635333.1|390814_391261_-	ATP-binding cassette domain-containing protein	NA	F2Y302	Organic_Lake_phycodnavirus	36.0	4.1e-12
WP_011528336.1|391483_392194_-|bacteriocin	bacteriocin ABC transporter	bacteriocin	NA	NA	NA	NA
WP_002994577.1|392298_392535_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_002994580.1|392832_393057_+|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002994581.1|393034_393211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109828766.1|393454_393817_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_028797129.1|394427_394655_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002994587.1|394703_395021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111674504.1|395086_395368_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_111674505.1|395316_395970_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	39.0	1.5e-26
WP_080367206.1|396009_396225_+|transposase	transposase	transposase	A4JX31	Burkholderia_virus	38.0	6.5e-08
WP_002992578.1|398083_398833_+	response regulator transcription factor	NA	A0A1V0E029	Clostridioides_phage	28.0	2.1e-21
WP_111674506.1|398833_400168_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_011017462.1|400315_400441_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_111674507.1|400517_401882_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_111674508.1|401892_404046_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.1	1.3e-42
WP_111674509.1|405372_405609_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002987564.1|405633_405816_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_002992018.1|407010_407238_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002985729.1|407250_407451_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_011054252.1|407989_408271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023605036.1|408464_408866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111674510.1|409116_410187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_030126785.1|410279_410678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020833327.1|411026_411296_-	quorum-sensing system protein StcA	NA	NA	NA	NA	NA
WP_128650799.1|412209_412278_-	peptide pheromone SHP2	NA	NA	NA	NA	NA
WP_002990747.1|412366_413233_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_111674511.1|413404_414232_+	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	5.1e-16
WP_011017469.1|414228_414822_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_011284584.1|415011_416514_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	41.2	6.7e-75
WP_002994146.1|416635_417829_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_002990729.1|417825_417972_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002985700.1|418017_418254_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_111674512.1|418347_420681_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	8.8e-90
WP_111674513.1|420683_421151_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	56.3	2.2e-40
WP_111674514.1|421156_421876_+	glutaminyl-peptide cyclotransferase	NA	NA	NA	NA	NA
WP_031488437.1|421992_422640_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
WP_111674515.1|422689_423616_-	DUF979 family protein	NA	NA	NA	NA	NA
WP_012560521.1|423615_424299_-	DUF969 domain-containing protein	NA	NA	NA	NA	NA
WP_023079867.1|424509_425436_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	47.2	2.2e-76
WP_002985686.1|425580_425958_-	VOC family protein	NA	NA	NA	NA	NA
WP_002985684.1|425968_426634_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002985682.1|426682_427768_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_002985680.1|427941_428943_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
WP_002985678.1|429073_430072_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_111674516.1|430073_431408_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_047235200.1|431829_433773_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
>prophage 3
NZ_LS483407	Streptococcus pyogenes strain NCTC13744 chromosome 1	1808803	626027	636631	1808803		Streptococcus_phage(57.14%)	9	NA	NA
WP_030126735.1|626027_628238_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.9	6.5e-268
WP_002985142.1|628345_629509_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
WP_002985140.1|629505_630192_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
WP_002985136.1|630285_631452_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
WP_011054350.1|631512_631854_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	39.3	1.3e-18
WP_002985132.1|632074_633427_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	4.5e-30
WP_002992648.1|633506_634784_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_011017641.1|634813_635254_-	membrane protein	NA	NA	NA	NA	NA
WP_011017642.1|635488_636631_+	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	8.3e-25
>prophage 4
NZ_LS483407	Streptococcus pyogenes strain NCTC13744 chromosome 1	1808803	1002932	1134222	1808803	integrase,tRNA,tail,holin,portal,protease,terminase,transposase,capsid	Streptococcus_phage(35.29%)	131	1002877:1002893	1131595:1131614
1002877:1002893	attL	TGAACTGCACCCCAAAA	NA	NA	NA	NA
WP_172453377.1|1002932_1004274_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	49.1	4.0e-63
1002877:1002893	attL	TGAACTGCACCCCAAAA	NA	NA	NA	NA
WP_002992869.1|1004574_1005447_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA	NA
WP_002984130.1|1005670_1006981_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
WP_011284472.1|1007058_1007352_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_023078513.1|1007495_1007738_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_168429869.1|1007783_1008107_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5P429	Shigella_phage	44.1	4.7e-18
WP_014407646.1|1008123_1008855_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002984124.1|1008969_1009335_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_011284908.1|1009454_1010675_-	MFS transporter	NA	NA	NA	NA	NA
WP_011888813.1|1011048_1012533_+	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_002984115.1|1012637_1013039_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_111674613.1|1014070_1015462_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	F5CA72	Streptococcus_phi-m46.1-like_phage	99.1	1.3e-261
WP_002984109.1|1015510_1016962_-	LCP family protein	NA	NA	NA	NA	NA
WP_002989310.1|1017169_1017661_-	shikimate kinase	NA	NA	NA	NA	NA
WP_002984103.1|1017653_1018937_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002984102.1|1019047_1020013_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_002984100.1|1020014_1020875_-	methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_002989302.1|1020890_1022174_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014635551.1|1022182_1022725_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_111674614.1|1022962_1023952_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002989295.1|1024308_1025568_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_111674615.1|1025741_1026938_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	64.9	4.9e-137
WP_111674616.1|1027474_1029841_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_002984078.1|1030044_1030986_+	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA	NA
WP_030127036.1|1030960_1031164_-	DUF3272 domain-containing protein	NA	NA	NA	NA	NA
WP_111674617.1|1031259_1032930_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.2	8.6e-47
WP_009881127.1|1032929_1033427_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002992609.1|1033571_1034381_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002984063.1|1034433_1034697_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_002984060.1|1034776_1035403_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
WP_002989254.1|1035500_1036586_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
WP_014407660.1|1036695_1037970_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_111674618.1|1038065_1039493_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_002984033.1|1039677_1041411_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_002984031.1|1041415_1041679_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_002989242.1|1042071_1042290_+	redoxin NrdH	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
WP_111674619.1|1042309_1044469_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.6	4.7e-263
WP_011017933.1|1044801_1045761_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	1.8e-126
WP_111674620.1|1045735_1047049_+	chloride channel protein	NA	NA	NA	NA	NA
WP_002995750.1|1048434_1049130_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
1047088:1047104	attR	TGAACTGCACCCCAAAA	NA	NA	NA	NA
WP_023080157.1|1049148_1049910_-	DUF3169 family protein	NA	NA	NA	NA	NA
1047088:1047104	attR	TGAACTGCACCCCAAAA	NA	NA	NA	NA
WP_002989220.1|1049906_1050122_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_111674621.1|1050482_1053101_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	1.1e-61
WP_111674622.1|1053487_1054543_-	peptidylprolyl isomerase PrsA	NA	NA	NA	NA	NA
WP_002984000.1|1054605_1055313_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.0e-08
WP_111674623.1|1055378_1056575_-	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_023079941.1|1056950_1058756_-	oligoendopeptidase F	NA	NA	NA	NA	NA
WP_111674624.1|1058768_1059731_-	competence protein CoiA	NA	NA	NA	NA	NA
WP_111674625.1|1060027_1060744_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_111674626.1|1060862_1061567_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_002983989.1|1061768_1062797_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002983986.1|1062803_1064024_+	DUF3114 domain-containing protein	NA	NA	NA	NA	NA
WP_002983984.1|1064137_1064728_-	serine hydrolase	NA	NA	NA	NA	NA
WP_011054656.1|1064724_1064973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054657.1|1064957_1065185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002983977.1|1065351_1065957_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
WP_011054659.1|1066053_1067094_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_111674627.1|1067164_1069408_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	1.8e-55
WP_111674628.1|1069388_1070051_-	ComEA family DNA-binding protein	NA	NA	NA	NA	NA
WP_012560804.1|1070250_1070991_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_011054662.1|1071030_1071885_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_002989164.1|1071874_1072153_+	GIY-YIG nuclease family protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	1.8e-05
WP_002994363.1|1072176_1074177_-	potassium transporter Kup	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	1.3e-65
WP_011054664.1|1074304_1075924_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
WP_002989155.1|1076230_1077775_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.1	1.1e-35
WP_031488543.1|1078022_1078718_-	TIGR02206 family membrane protein	NA	NA	NA	NA	NA
WP_023079944.1|1078821_1080189_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_002994369.1|1080387_1081434_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_002983939.1|1081534_1082131_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_109828818.1|1082919_1083699_-	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
WP_011017959.1|1083822_1084365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002983930.1|1084525_1085047_-	transcription repressor NadR	NA	NA	NA	NA	NA
WP_109820919.1|1085153_1085849_-	phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_021299339.1|1086087_1087023_+	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
WP_011284945.1|1087322_1089185_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	5.4e-90
WP_111674629.1|1089716_1089899_-	Paratox	NA	A3F673	Streptococcus_phage	73.3	4.5e-18
WP_002988472.1|1090011_1090794_-	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.8	4.3e-49
WP_002988467.1|1091041_1092166_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	49.1	3.1e-93
WP_111674630.1|1092301_1093519_-	glucosaminidase domain-containing protein	NA	A0A1P8VVM5	Streptococcus_phage	59.7	1.2e-162
WP_111674631.1|1093637_1093865_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	5.8e-31
WP_011017397.1|1093861_1094134_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
WP_023079933.1|1094151_1094763_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	88.7	3.4e-78
WP_111674632.1|1094765_1095194_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	93.6	1.8e-65
WP_111674633.1|1095205_1097089_-	gp58-like family protein	NA	Q938J9	Temperate_phage	96.5	8.0e-251
WP_111674634.1|1097103_1098117_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	98.2	4.7e-181
WP_111674635.1|1098113_1100258_-|tail	phage tail protein	tail	Q938K1	Temperate_phage	97.1	0.0e+00
WP_111674636.1|1100254_1100971_-|tail	phage tail family protein	tail	Q938K2	Temperate_phage	98.7	3.6e-135
WP_111674637.1|1100967_1104228_-	tape measure protein	NA	Q938K3	Temperate_phage	98.5	0.0e+00
WP_010922087.1|1104217_1104799_-	hypothetical protein	NA	Q938K4	Temperate_phage	98.4	1.6e-104
WP_111674638.1|1104802_1105237_-	hypothetical protein	NA	Q938K5	Temperate_phage	98.6	3.8e-71
WP_011054741.1|1105275_1105761_-	hypothetical protein	NA	Q938K6	Temperate_phage	100.0	1.6e-86
WP_010922084.1|1105760_1106159_-|capsid	phage capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
WP_010922083.1|1106155_1106512_-	hypothetical protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
WP_010922082.1|1106511_1106844_-	hypothetical protein	NA	Q79S86	Temperate_phage	100.0	9.6e-59
WP_111674639.1|1106833_1107250_-	hypothetical protein	NA	Q938K7	Temperate_phage	98.2	1.3e-55
WP_111674640.1|1107303_1108122_-|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	99.6	6.8e-146
WP_010922079.1|1108125_1108740_-	hypothetical protein	NA	Q938K8	Temperate_phage	95.0	3.1e-95
WP_010922078.1|1108865_1109132_-	hypothetical protein	NA	Q938K9	Temperate_phage	95.5	8.3e-37
WP_010922077.1|1109218_1109446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111674641.1|1109445_1110939_-|capsid	phage minor capsid protein	capsid	Q938L1	Temperate_phage	79.8	3.1e-213
WP_111674642.1|1110943_1112446_-|portal	phage portal protein	portal	Q938L2	Temperate_phage	97.2	9.8e-276
WP_111674643.1|1112459_1113671_-|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	97.6	1.5e-221
WP_111674775.1|1113753_1114449_-|terminase	terminase	terminase	A0A2H4J4R0	uncultured_Caudovirales_phage	34.2	1.7e-28
WP_111674644.1|1114568_1114985_-	transcriptional regulator	NA	A7J289	Streptococcus_phage	98.6	7.3e-72
WP_023611036.1|1114981_1115173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023079587.1|1115421_1115592_-	hypothetical protein	NA	A7J285	Streptococcus_phage	98.1	2.8e-22
WP_047149508.1|1115592_1116915_-	DEAD/DEAH box helicase family protein	NA	A7J284	Streptococcus_phage	96.8	1.1e-249
WP_011054885.1|1116911_1117187_-	VRR-NUC domain-containing protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
WP_111674645.1|1119962_1121885_-	DNA polymerase	NA	A7J280	Streptococcus_phage	98.4	0.0e+00
WP_111674646.1|1121927_1122491_-	DUF2815 family protein	NA	D2J040	Enterococcus_phage	59.0	8.7e-52
WP_111674647.1|1122499_1123657_-	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	97.7	8.8e-216
WP_002988708.1|1123656_1123956_-	hypothetical protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
WP_023611025.1|1124044_1124248_-	hypothetical protein	NA	A7J276	Streptococcus_phage	98.5	1.6e-32
WP_023611032.1|1125119_1125323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023611037.1|1125315_1125486_-	hypothetical protein	NA	A7J273	Streptococcus_phage	87.5	2.9e-19
WP_111674648.1|1125487_1125799_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
WP_023611028.1|1125905_1126121_+	hypothetical protein	NA	A0A1S5SA41	Streptococcus_phage	61.4	1.9e-15
WP_023611035.1|1126094_1126343_-	hypothetical protein	NA	A0A141E1M0	Streptococcus_phage	69.5	1.6e-26
WP_011017885.1|1126422_1126632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023611024.1|1126773_1127034_+	hypothetical protein	NA	M1PS67	Streptococcus_phage	70.9	5.8e-27
WP_023611022.1|1127132_1127870_-	phage antirepressor KilAC domain-containing protein	NA	A0A2H4IZX7	uncultured_Caudovirales_phage	68.3	3.6e-90
WP_002993390.1|1127881_1128073_-	hypothetical protein	NA	A7J270	Streptococcus_phage	92.1	4.0e-25
WP_020837421.1|1128708_1128804_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_002994741.1|1129226_1129574_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SEQ8	Streptococcus_phage	72.6	1.2e-40
WP_002994744.1|1129577_1129958_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SFH2	Streptococcus_phage	61.1	8.0e-41
WP_076634078.1|1129969_1130236_+	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
WP_003051793.1|1130364_1131507_+|integrase	site-specific integrase	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
WP_002983920.1|1131596_1131872_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
WP_002989129.1|1131970_1132558_-	YpmS family protein	NA	NA	NA	NA	NA
WP_161230208.1|1132535_1133378_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_030126969.1|1133370_1134222_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	9.2e-13
>prophage 5
NZ_LS483407	Streptococcus pyogenes strain NCTC13744 chromosome 1	1808803	1423712	1465258	1808803	head,tail,portal,terminase,integrase,capsid	Streptococcus_phage(32.08%)	63	1420233:1420250	1465338:1465355
1420233:1420250	attL	CTTATATTATAACAAAAA	NA	NA	NA	NA
WP_002994484.1|1423712_1424405_-	AP2 domain-containing protein	NA	A0A2H4J2S8	uncultured_Caudovirales_phage	34.2	1.5e-32
WP_023078271.1|1424637_1425195_-	glycoside hydrolase family 73 protein	NA	Q938J4	Temperate_phage	89.2	2.8e-95
WP_011054731.1|1425305_1425491_-	hypothetical protein	NA	Q938J5	Temperate_phage	100.0	1.7e-25
WP_023078532.1|1425487_1425784_-	hypothetical protein	NA	Q938J6	Temperate_phage	99.0	2.9e-46
WP_023078287.1|1425794_1426406_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	92.1	1.9e-84
WP_023078279.1|1426408_1426837_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	87.9	6.0e-61
WP_023078280.1|1426848_1428867_-	gp58-like family protein	NA	Q938J9	Temperate_phage	72.6	5.1e-179
WP_023078285.1|1428876_1429986_-	hyaluronidase HylP	NA	A7J2A8	Streptococcus_phage	73.2	8.4e-123
WP_111674696.1|1429985_1432040_-|tail	phage tail protein	tail	A3F656	Streptococcus_phage	83.8	0.0e+00
WP_011184914.1|1432036_1432816_-|tail	phage tail family protein	tail	A3F655	Streptococcus_phage	54.8	1.7e-66
WP_023078274.1|1432848_1436484_-	tape measure protein	NA	U6E979	Streptococcus_phage	29.6	5.2e-04
WP_002988428.1|1436498_1436828_-	hypothetical protein	NA	A0A1P8BLR3	Lactococcus_phage	40.6	5.7e-11
WP_023078288.1|1436869_1437229_-	phage protein	NA	D7RWD6	Brochothrix_phage	45.5	1.5e-20
WP_023078281.1|1437281_1437956_-|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	53.6	1.0e-43
WP_010922220.1|1437965_1438355_-	hypothetical protein	NA	Q38611	Lactococcus_phage	68.2	1.0e-43
WP_002984399.1|1438351_1438717_-	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	7.7e-17
WP_002990028.1|1438697_1439006_-	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	5.7e-13
WP_002984392.1|1439002_1439356_-|head,tail	phage head-tail connector protein	head,tail	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
WP_011284854.1|1439369_1439612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023078263.1|1439621_1440704_-|capsid	major capsid protein	capsid	A0A2H4J022	uncultured_Caudovirales_phage	56.9	2.2e-104
WP_023078284.1|1440706_1441087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023078278.1|1441096_1441630_-	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	84.2	1.2e-15
WP_023078266.1|1441773_1442040_-	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	71.6	6.6e-26
WP_011284859.1|1442042_1442357_-	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
WP_002988389.1|1442426_1442612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012560958.1|1442615_1444178_-|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	2.5e-48
WP_111674697.1|1444158_1445661_-|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.6e-140
WP_012560959.1|1445672_1446962_-|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	74.9	1.7e-183
WP_023078286.1|1446939_1447422_-|terminase	terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	40.3	3.3e-15
WP_011017866.1|1448253_1448694_-	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	100.0	5.0e-79
WP_012560960.1|1449133_1449655_-	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	76.3	5.6e-69
WP_012560961.1|1449651_1449945_-	hypothetical protein	NA	A0A097PAR1	Streptococcus_pyogenes_phage	97.9	8.0e-49
WP_011054812.1|1449941_1450127_-	hypothetical protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
WP_012560962.1|1450224_1450710_-	class I SAM-dependent methyltransferase	NA	A0A097PAU8	Streptococcus_pyogenes_phage	99.4	3.6e-94
WP_038432520.1|1450713_1450998_-	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	5.0e-40
WP_012560963.1|1450994_1451399_-	hypothetical protein	NA	Q938M1	Temperate_phage	94.0	3.4e-66
WP_023078268.1|1451382_1451670_-	DUF1599 domain-containing protein	NA	J7KDH9	Streptococcus_phage	75.0	5.1e-32
WP_012560965.1|1451911_1452268_-	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	98.3	5.5e-60
WP_011285574.1|1452264_1452705_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
WP_011106686.1|1452704_1452908_-	hypothetical protein	NA	Q938M6	Temperate_phage	100.0	4.7e-32
WP_023078249.1|1452913_1453339_-	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	83.0	2.8e-55
WP_023078248.1|1453331_1454006_-	ERF family protein	NA	A0A097PBE8	Streptococcus_pyogenes_phage	100.0	5.2e-120
WP_111674698.1|1454006_1454489_-	siphovirus Gp157 family protein	NA	Q938M9	Temperate_phage	98.8	2.0e-49
WP_012560970.1|1454510_1454765_-	hypothetical protein	NA	Q938N0	Temperate_phage	96.4	1.8e-41
WP_012560971.1|1454751_1455099_-	hypothetical protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	47.7	4.6e-11
WP_021341158.1|1455239_1456022_-	ATP-binding protein	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	98.1	2.7e-144
WP_021340639.1|1456008_1456812_-	DnaD domain protein	NA	A0A2P0VI76	Streptococcus_phage	53.8	2.4e-63
WP_012560973.1|1456927_1457371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000568478.1|1457426_1457807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000370473.1|1457796_1458069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012560974.1|1458241_1458421_-	hypothetical protein	NA	A0A1X9I5M8	Streptococcus_phage	65.5	1.2e-12
WP_001191791.1|1458715_1458973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021340658.1|1459050_1459236_-	helix-turn-helix transcriptional regulator	NA	J7KH19	Streptococcus_phage	83.6	1.4e-22
WP_023078400.1|1459379_1459610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021733331.1|1459735_1459942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000164463.1|1460089_1460305_-	helix-turn-helix transcriptional regulator	NA	J7KK54	Streptococcus_phage	98.6	5.0e-32
WP_011017887.1|1460402_1461086_+	DUF4145 domain-containing protein	NA	A0A1X9I5M7	Streptococcus_phage	59.4	1.2e-71
WP_011184610.1|1461212_1461371_-	hypothetical protein	NA	J7KH24	Streptococcus_phage	92.3	1.7e-21
WP_023078407.1|1461429_1461810_+	DUF2513 domain-containing protein	NA	A0A1S5SCT1	Streptococcus_phage	56.7	1.9e-34
WP_023078399.1|1461789_1461927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023078393.1|1462286_1463033_+	helix-turn-helix transcriptional regulator	NA	J7KJ52	Streptococcus_phage	91.0	2.3e-124
WP_002984270.1|1463045_1463855_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
WP_023078397.1|1464103_1465258_+|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	94.8	1.2e-196
1465338:1465355	attR	CTTATATTATAACAAAAA	NA	NA	NA	NA
>prophage 6
NZ_LS483407	Streptococcus pyogenes strain NCTC13744 chromosome 1	1808803	1533170	1557650	1808803	integrase	Streptococcus_phage(85.71%)	23	1537138:1537153	1561555:1561570
WP_111674709.1|1533170_1536149_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	21.9	9.7e-25
WP_109821180.1|1536161_1537385_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	21.6	4.4e-16
1537138:1537153	attL	TTATAGCTTTTCTAAA	NA	NA	NA	NA
WP_111674710.1|1537397_1538978_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	49.2	5.5e-120
WP_000420682.1|1540124_1540439_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|1540454_1540841_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_111674711.1|1540869_1542255_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	99.8	9.4e-265
WP_000879507.1|1542257_1542410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|1542432_1543638_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_001009056.1|1543680_1543902_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|1544018_1544516_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|1544490_1544997_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|1544980_1547428_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000804748.1|1547430_1549608_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|1549604_1550606_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_111674712.1|1550602_1551538_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	98.7	2.2e-169
WP_001791010.1|1551782_1551899_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691736.1|1551914_1553834_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_000336323.1|1553952_1554120_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|1554179_1554533_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|1555037_1555460_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|1555456_1555687_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|1556147_1556351_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|1556432_1557650_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
1561555:1561570	attR	TTTAGAAAAGCTATAA	NA	NA	NA	NA
