The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	12608	71196	4133344	transposase	uncultured_Mediterranean_phage(20.0%)	44	NA	NA
WP_005012067.1|12608_13559_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|14113_14488_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|14562_15621_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|15644_16595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|19476_20646_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|20746_22354_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929810.1|22400_24422_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|24450_24696_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|24709_25900_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|26095_27061_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|27083_28223_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|28434_29397_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|29520_31545_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|31741_33985_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|34263_34722_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|35649_38271_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|38334_40962_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|41113_42178_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|42177_42948_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|42956_43790_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|43802_44582_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|44655_46089_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|46116_46875_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|46930_48781_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|48874_49351_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|49367_50288_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|50394_50895_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|51268_51961_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_005012067.1|52269_53220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|53216_56990_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|57326_59216_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|59227_60121_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|60224_61022_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|61018_61870_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|61931_62612_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|62639_62975_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|62975_63935_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|63955_64444_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|64725_65742_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003807735.1|65933_67037_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931562.1|67123_67888_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931563.1|68009_69200_+	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_005012067.1|69196_70147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|70245_71196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	256007	298853	4133344	transposase	Planktothrix_phage(50.0%)	35	NA	NA
WP_010927663.1|256007_256958_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069022.1|257044_257995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|258164_259391_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|259590_260457_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|260449_261412_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|261512_262463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|262561_263512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|263610_264561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|264557_266051_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|266047_269155_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|269151_272220_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|272216_273467_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|273647_274409_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|274441_275092_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|275094_275934_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|276174_276918_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|277000_277348_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|277445_278288_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|278332_279220_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|279246_279435_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|279532_280990_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|280976_282503_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|282521_282989_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|282988_284011_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|284131_284851_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|284926_286027_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|286028_287219_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|287338_288355_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|288673_289345_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|289341_290250_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|290461_291109_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|294960_296037_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|296047_296857_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|296946_297720_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010929591.1|297902_298853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	334873	394370	4133344	transposase,tRNA	Natrialba_phage(12.5%)	52	NA	NA
WP_010929569.1|334873_336793_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|336789_337482_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|337478_338276_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|338282_339044_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|339087_340005_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|339997_340783_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|340816_340999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|341594_342785_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|343023_343404_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|343413_343947_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|344010_344442_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|344444_345143_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|345385_345910_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|345991_346375_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|346534_350647_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|350646_354891_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|354999_355404_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|355644_356820_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|359225_360332_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|361343_362159_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|362155_363106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|363187_363523_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|363547_363982_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|364014_365232_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|365237_365735_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|365942_366878_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|367087_367879_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|367921_369343_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|369498_370449_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|370547_371498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|371494_372685_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|372934_373846_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|373847_375986_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|375982_376522_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|376525_377254_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|377240_378134_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|378204_378600_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|378609_379140_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010930208.1|379585_380536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|381122_381671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|381642_381879_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|382006_382900_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|384069_385317_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|385313_385928_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|386063_387014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|387056_388313_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|389544_390279_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|390284_390875_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|390899_391589_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|391585_392347_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|392426_393326_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|393419_394370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	405007	457995	4133344	tRNA,transposase	Planktothrix_phage(20.0%)	51	NA	NA
WP_005012808.1|405007_405958_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|406051_406366_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|407558_409466_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|409627_410248_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|410279_410861_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|410949_411201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|411202_412045_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|412150_413560_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_010930179.1|413556_414507_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|414581_415526_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|415522_417397_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|418744_419449_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|419445_420552_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|420813_421407_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|421403_422591_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|422653_423913_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|423936_425025_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|425032_426133_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|426136_426712_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|426715_427768_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|427898_428906_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|428907_430194_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|430210_430366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|430390_431194_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|431190_432057_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|432131_433262_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|433261_434101_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|435033_435636_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|435665_436319_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|436451_437708_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|437755_438655_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|438730_439006_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|439013_439676_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|439737_440739_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|440753_441302_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|441359_442256_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|442252_443314_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|443349_444300_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|445199_446393_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|446474_447104_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|447165_447849_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|447858_449541_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|449828_450176_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|450266_450584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|450866_451883_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|451958_452759_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|452755_453631_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|453641_454934_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|454976_456017_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|456122_456944_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|457044_457995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	500816	561339	4133344	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|500816_501767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|503210_504113_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|504090_504720_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|505002_506433_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|506466_507096_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|507144_508752_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|508776_509460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|509541_510018_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|510224_511175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|512290_512818_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|512909_513725_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|513785_514520_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|514557_516636_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|516885_517158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|517259_518345_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|518348_520253_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_023999174.1|520249_523936_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|523996_524560_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|524567_524990_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|525017_525437_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|525465_525939_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|526038_526536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|526690_528961_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|529009_530242_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|530340_531291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|531393_532029_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|532025_532919_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|533313_534414_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|534495_534870_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|534929_537794_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|537938_538679_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|538748_539960_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|539988_540957_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|541570_542521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|542677_543001_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|543105_544146_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|544151_544931_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|544976_545273_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|545298_545574_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|545630_546275_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|546274_546961_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|547090_547942_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|547992_548718_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|548749_550099_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|550210_551143_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|551600_554396_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|554989_557932_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|558003_558723_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|558761_559310_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|559464_560364_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|560388_561339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	569271	622859	4133344	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|569271_570222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|570308_571259_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|571255_572206_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|572304_573102_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|574051_574462_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|575483_576227_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|576270_577314_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|577484_579587_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|580997_581954_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|581972_582464_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|582460_583816_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|583816_584515_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|584511_585213_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|585465_586515_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|586620_587562_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|587558_589448_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|589534_590173_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|590315_591701_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|591631_592168_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|592319_593711_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|593727_594708_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|594843_595827_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|595891_596791_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|596897_598652_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|598659_599784_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|599797_600778_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|601508_602459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|603018_603564_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|603647_605267_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|605282_606437_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|606450_606576_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|606572_608324_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|608320_610000_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|610062_610611_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|611753_612032_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|613075_614026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|614303_614465_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|614472_614613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|615131_615581_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|615590_616202_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|616360_617215_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|617234_618617_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|618681_619323_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|619462_619921_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|619945_620722_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|620775_621912_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|621908_622859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	726792	784301	4133344	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|726792_727743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|727879_728797_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|728793_729042_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|729038_730244_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|730316_731312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|731334_732555_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|732551_733196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|734926_735736_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|736040_736994_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|737092_738076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|738002_738704_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|738752_739523_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|739519_740698_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|740865_742572_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|742568_743465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|743505_745095_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|745144_746137_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|746205_746805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|747265_748246_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|748321_749272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|749360_750275_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|750271_750931_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|751020_751944_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|751949_752405_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|752401_753505_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|753463_753733_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|753692_755312_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|755308_756367_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|756496_756991_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|757083_758061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|758256_759462_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|759458_760970_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|760985_762299_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|762489_762669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|763078_763813_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|766257_767208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|767339_767738_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|768148_768619_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|768707_769052_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|769151_770552_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|772340_772859_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|772969_773725_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|773920_775153_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|775145_775931_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|775997_776969_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|776979_777957_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|778082_779255_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|779281_780310_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|780375_781569_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|783350_784301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	925306	986496	4133344	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|925306_926257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|926753_927623_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|927619_928441_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|928639_929131_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_095586258.1|929149_930223_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|930269_931373_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|931448_932069_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|932089_932599_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|932653_932905_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|932968_934102_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|934109_934496_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|934492_937012_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|937440_937779_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|937775_938282_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|938343_939144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|939254_940196_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|940289_941825_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|943504_945355_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|945358_946192_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|946191_947133_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|947384_948356_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|948497_950786_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|951092_952001_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|952055_953021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|953095_954757_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|954828_955539_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|955687_956638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|957336_957720_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|957777_958380_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|958397_958799_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|958932_959826_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|959822_960404_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|961198_961933_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|961973_963023_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|963170_963749_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|964135_965113_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|965206_969601_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|969801_970650_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|970808_971621_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|971676_972627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|972725_973526_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|973587_973971_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|973982_975416_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|975622_975952_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|975954_976704_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|976886_977807_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|977853_978066_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|978088_978511_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|978527_979628_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|979724_981242_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|981317_982157_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|982178_983060_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|983141_984236_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|984529_985480_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|985554_986496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	991820	1039060	4133344	transposase,terminase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|991820_992846_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|992886_993126_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|993195_994785_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|994784_995333_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|995413_995986_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|996004_996916_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|996989_997958_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|998080_999154_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|999158_1000979_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|1001055_1002006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|1002094_1002430_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|1002563_1003214_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|1003235_1004654_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|1004723_1005479_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|1005447_1006206_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|1006216_1007098_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|1007114_1007822_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|1007824_1008583_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|1008792_1010535_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|1010527_1011052_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|1011091_1011886_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|1012053_1013127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1013225_1014176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|1014427_1014634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|1014705_1015317_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|1015871_1016123_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|1016115_1016805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1017061_1018012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|1018651_1019137_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|1019123_1020401_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|1020403_1021822_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|1021850_1022906_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|1022911_1023154_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|1023276_1023879_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010929584.1|1025356_1026307_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|1026981_1027233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|1027295_1027778_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|1027791_1027980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|1027979_1028375_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|1028371_1028770_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|1028766_1029189_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|1029196_1029697_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|1029951_1030470_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|1030479_1030809_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|1030826_1031117_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|1031142_1033755_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|1033764_1034124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|1034191_1034725_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|1034721_1035111_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|1035103_1039060_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 10
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	1045226	1099156	4133344	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|1045226_1046957_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|1047009_1047438_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|1047440_1048121_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|1048120_1048579_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|1048615_1049590_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|1049606_1050923_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|1050954_1051452_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|1051538_1052228_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|1052227_1053277_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|1053273_1054068_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|1054236_1054587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|1054562_1055120_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|1056249_1057200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|1059337_1060567_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|1060569_1062012_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|1062116_1063262_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|1063293_1064091_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|1064115_1065675_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|1065671_1068044_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|1068153_1069257_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|1069256_1069949_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|1070092_1070794_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|1070778_1071156_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|1071887_1072838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|1072997_1073870_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|1074210_1074429_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|1074468_1075848_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|1075889_1077287_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|1077326_1078979_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|1078982_1079867_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|1079866_1080808_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|1080886_1082506_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|1082672_1083488_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|1083555_1084125_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1084125_1085076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|1085730_1086828_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|1086861_1088127_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|1088284_1089235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|1089478_1090069_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|1090084_1092529_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|1092648_1093620_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|1093751_1094276_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|1094235_1095186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|1095407_1097603_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|1097675_1098104_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1098205_1099156_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	1374978	1423901	4133344	holin,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_023853531.1|1374978_1376112_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1376204_1376357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1376388_1376937_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1376955_1377441_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1377618_1378557_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1378559_1378877_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1378922_1379867_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1381547_1382198_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1382251_1382587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1382583_1383444_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1383460_1383742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1383815_1384079_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1384322_1385273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1385571_1386309_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1386744_1387068_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1387102_1387663_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1387783_1388659_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1388671_1389619_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1389720_1390014_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1390040_1392098_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1392112_1392613_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1392686_1394393_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1395256_1396309_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1396361_1396751_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1396759_1397392_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930153.1|1397491_1398508_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1399296_1400346_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1400342_1401986_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1401982_1402870_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1403010_1403484_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1403473_1404496_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1404492_1405920_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1406857_1407874_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1408206_1409142_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1409191_1411072_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1411138_1411483_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1411627_1412764_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1412760_1413834_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1413991_1415428_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1415518_1416160_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930320.1|1416495_1417512_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930159.1|1417844_1420577_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1420643_1422065_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1422328_1423045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1423129_1423447_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1423487_1423901_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 13
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	1432969	1496557	4133344	tRNA,transposase	Planktothrix_phage(18.18%)	48	NA	NA
WP_005013747.1|1432969_1433920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1434287_1435064_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1435108_1435966_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1435987_1437004_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1437138_1438179_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1438373_1440455_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1440690_1442184_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1442414_1443209_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1443429_1444788_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1444784_1445627_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1445645_1447532_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1447473_1447725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1447769_1448402_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1448420_1449023_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1449174_1450125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1450705_1451413_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1451771_1452758_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1452897_1453911_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1453907_1454858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1454956_1455907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1456019_1456478_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1456514_1457828_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1457845_1458217_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1458213_1459677_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1459817_1460546_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1460527_1463377_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1463589_1464540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1464707_1465532_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1465531_1466410_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1467314_1468430_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1468458_1469253_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1469249_1471115_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1471193_1471826_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1471822_1472125_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1472167_1473688_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1473694_1474450_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1474479_1475584_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1475686_1477387_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1477368_1478346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1478355_1479636_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1479628_1480324_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1480357_1481185_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1481466_1484697_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1485432_1489359_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|1493054_1494023_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1494092_1494938_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1495005_1495560_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1495606_1496557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	1655965	1724452	4133344	transposase	Planktothrix_phage(33.33%)	56	NA	NA
WP_005012808.1|1655965_1656916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1657684_1658323_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1659212_1659659_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1659740_1660442_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1660442_1661210_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1661206_1662445_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1662444_1663371_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1663473_1664589_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1664604_1665555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1665908_1666490_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1666486_1667320_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1667530_1668844_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1669020_1669902_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1669921_1670773_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1670825_1671914_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1672024_1673152_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1673386_1673998_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1674096_1675047_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1675268_1675646_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1675793_1676291_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1676287_1676815_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1676948_1677764_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1677776_1678958_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1679005_1679899_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1680025_1680496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1680621_1681449_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|1682540_1683005_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1683016_1683718_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1683827_1684328_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1684410_1685589_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1687216_1687552_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1687739_1689188_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1689245_1689590_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1689696_1690236_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1690328_1691279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1691377_1691785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1692017_1692449_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1692630_1693035_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1694271_1694595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1694597_1695485_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1695517_1695943_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1696014_1696368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1696607_1697114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1697152_1698484_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1698543_1699359_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1699355_1700210_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1703272_1705816_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1707182_1708937_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1708933_1711054_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1711058_1713254_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1713250_1716592_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1719394_1720345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1720410_1720590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1720706_1721462_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1721448_1722594_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1723501_1724452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	1814065	1852655	4133344	protease,transposase	Emiliania_huxleyi_virus(14.29%)	35	NA	NA
WP_010930352.1|1814065_1815400_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1815452_1817789_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1817914_1818478_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1818486_1819578_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1819649_1820105_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1820105_1820900_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1820896_1822078_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1822064_1822670_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1822666_1823440_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1823451_1824279_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1824440_1826804_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1826871_1827591_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1827714_1828140_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1828174_1829125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1829242_1830169_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1830234_1831392_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1831372_1831840_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1831987_1832938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1832954_1833389_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1833378_1833729_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1833925_1835080_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1835076_1836249_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1836296_1837190_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1837235_1837673_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1837732_1838422_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1838431_1839382_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1839480_1840443_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1840669_1841824_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1841834_1845077_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1846098_1846743_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1846753_1847653_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1847700_1848786_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1848782_1850477_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1850655_1851606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1851704_1852655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	2389602	2462815	4133344	transposase	Bacillus_virus(20.0%)	59	NA	NA
WP_010929591.1|2389602_2390553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2391004_2392006_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2392178_2393036_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2393032_2394295_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2394395_2394770_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2394842_2396030_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2396114_2396885_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2396998_2397763_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2397713_2399015_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2399011_2399818_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2401562_2402534_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2402690_2403203_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2403361_2404336_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2405336_2406131_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2406156_2406963_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2407073_2407664_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2407674_2408853_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2408955_2409330_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019247651.1|2410980_2414211_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2415701_2416448_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2416532_2416994_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2417031_2418090_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2418052_2419882_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2419921_2420494_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2421918_2422740_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2423058_2424381_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2424740_2425376_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2425335_2426286_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2427156_2428029_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2428106_2429246_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2429604_2430861_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2430866_2431394_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2431398_2432217_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2432216_2432939_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2432960_2433275_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2433292_2434441_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2434471_2435347_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2435343_2436663_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2436735_2437932_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2437942_2439430_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2442024_2442924_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2443061_2444027_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2444125_2445076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2445297_2446248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2446244_2446547_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2446706_2447111_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2447103_2448330_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2448326_2448773_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2448842_2449625_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2449666_2451172_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2451457_2452291_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2453728_2454550_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2454568_2455423_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2455426_2456398_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2457082_2457259_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2457744_2458695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2459832_2460129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2460303_2461656_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2461798_2462815_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	2476021	2521393	4133344	transposase	Bacillus_phage(25.0%)	45	NA	NA
WP_010929577.1|2476021_2476972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2477624_2478575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2478658_2480476_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2480549_2481197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2481209_2482139_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2482308_2482773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2483020_2483701_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2483749_2485441_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2485456_2486008_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2486004_2486376_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2486488_2487325_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2487335_2487860_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2487957_2488137_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2488266_2489241_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2489371_2489728_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2489717_2490593_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2490691_2491576_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2491597_2492893_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2493841_2494492_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2494579_2496100_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2496357_2498223_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2499268_2500219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2500236_2500377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2501191_2501551_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2501538_2502975_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2502971_2503625_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2503621_2504815_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2504918_2506193_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2506189_2507140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2507306_2508281_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2508277_2508421_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2510042_2510705_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2510707_2510884_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2510880_2511819_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2511910_2513401_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2513486_2513639_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2513652_2513892_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2513987_2514731_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2514763_2515264_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2515326_2516286_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2516282_2517044_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2517059_2518145_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010929577.1|2518344_2519295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2519393_2520344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2520442_2521393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	2586818	2706167	4133344	tRNA,protease,transposase	Lake_Baikal_phage(11.11%)	106	NA	NA
WP_010929577.1|2586818_2587769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2587969_2588779_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2588903_2589854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2589850_2590744_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2590868_2591063_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2591062_2591404_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2591413_2593276_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2593405_2593918_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2593920_2594244_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2594245_2594656_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2594693_2595905_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2595922_2596435_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2596650_2597142_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2597394_2599431_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2599508_2600711_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2600839_2601490_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2603047_2603998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2604568_2604781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2604798_2605530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2605564_2606206_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2606198_2606867_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2609079_2609856_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2609877_2611035_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2611031_2611463_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2611459_2612263_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2612276_2612678_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2612744_2613716_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2613781_2615005_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2615232_2616183_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2616306_2618760_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2618948_2620253_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2620357_2621011_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2621013_2622324_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2622520_2623081_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2623192_2623393_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2623738_2624305_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2624388_2624592_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2624898_2625219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2625260_2625542_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2625616_2626873_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2627255_2627585_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2629155_2629977_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2629976_2631116_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2631122_2632019_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2632015_2633941_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2634300_2636913_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2636965_2639266_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2639262_2640471_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2640732_2641107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931359.1|2641103_2642054_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2642152_2643103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2643201_2644152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930544.1|2644250_2645552_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930543.1|2646304_2647270_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2647259_2650121_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2650123_2650630_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2650734_2651943_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2651944_2652883_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2653044_2653518_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2653514_2654465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2654575_2655016_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2655144_2656374_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2656412_2657234_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2657287_2658439_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2658530_2659019_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2661569_2664119_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2664189_2666763_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2667028_2667229_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2667260_2667422_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2667479_2667818_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2667966_2668917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2669691_2670360_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2670341_2672357_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2672539_2673289_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2673301_2674165_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2674168_2675584_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2675717_2676446_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2676584_2676785_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2676960_2677359_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2677382_2678783_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2678901_2679654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2679942_2680542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2680646_2681426_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2681422_2682307_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2682324_2683104_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2683088_2683847_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2683972_2684620_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2684887_2685904_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2686001_2687042_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2687176_2688469_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2689828_2690212_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2690229_2690817_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2690854_2691805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2692789_2693563_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2693559_2694558_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2694642_2695419_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2695574_2697179_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2697559_2698684_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2698810_2699434_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2699430_2701332_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2701380_2702175_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2702187_2703189_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2703185_2703692_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2703684_2704533_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2704630_2705173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2705216_2706167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	2713463	2769054	4133344	transposase	uncultured_Caudovirales_phage(25.0%)	47	NA	NA
WP_010929588.1|2713463_2714414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2714512_2714809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2714915_2715833_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2715837_2716551_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2716564_2717536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2719255_2719636_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2719639_2720827_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2721250_2721988_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2722281_2723232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249376.1|2723228_2723657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811538.1|2725058_2726021_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2726136_2727090_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930501.1|2727099_2728092_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930500.1|2728143_2728899_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930499.1|2728963_2729653_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930498.1|2729874_2730825_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930497.1|2730855_2732052_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_019247910.1|2732042_2732822_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247909.1|2732934_2733861_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930494.1|2733946_2734891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930493.1|2734868_2735738_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930492.1|2735981_2736605_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_019247905.1|2736919_2737219_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023995112.1|2737232_2740307_-	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930489.1|2740436_2741111_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019247865.1|2741103_2742918_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930487.1|2742971_2743919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2744023_2744974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2745526_2747152_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2747201_2748236_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2748238_2749585_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2749581_2751096_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2751086_2752097_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2752570_2753512_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2753520_2754489_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2756028_2756997_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2757174_2758164_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2758210_2758969_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2759158_2759896_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2759994_2760945_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2761129_2761912_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2761905_2762607_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2762846_2763449_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2764775_2765726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2765722_2767279_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2767271_2768045_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2768103_2769054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	2805003	2871331	4133344	transposase	Ectocarpus_siliculosus_virus(11.11%)	56	NA	NA
WP_005012067.1|2805003_2805954_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2805973_2806879_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2806956_2807655_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2807814_2808759_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2808768_2810256_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2810255_2811323_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2811386_2812799_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2812984_2814205_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2814226_2815177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930449.1|2815275_2815917_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|2816043_2817846_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|2819497_2820403_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|2820584_2821961_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|2822127_2822868_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|2823004_2823931_+	YicC family protein	NA	NA	NA	NA	NA
WP_010930445.1|2824203_2824359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926696.1|2824496_2824781_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|2824839_2826330_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|2826574_2827174_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|2827178_2827949_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|2828186_2828900_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|2828896_2829814_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930442.1|2829949_2830582_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930441.1|2830623_2830827_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|2830851_2833131_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|2833143_2833872_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|2833868_2834528_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|2834596_2835349_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|2835530_2836481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446216.1|2837373_2838279_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010930437.1|2838290_2839418_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_010930436.1|2839506_2840121_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930435.1|2840778_2841966_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|2841962_2844560_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|2844814_2845030_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|2845485_2846040_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930431.1|2846307_2846868_+	membrane protein	NA	NA	NA	NA	NA
WP_023853587.1|2846979_2848284_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|2848280_2849792_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019248041.1|2849897_2850899_+	imelysin family protein	NA	NA	NA	NA	NA
WP_019249265.1|2850888_2852001_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2852099_2853050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|2853046_2853673_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|2853732_2854584_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010930426.1|2854687_2855287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|2855283_2856048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2856117_2857068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930424.1|2857166_2857775_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_010930423.1|2857825_2858152_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_023995689.1|2858198_2860424_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930421.1|2861091_2864496_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_010930420.1|2864508_2867169_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_004568212.1|2867190_2867337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930419.1|2867372_2868575_-	MFS transporter	NA	NA	NA	NA	NA
WP_023994932.1|2869261_2870374_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_005012067.1|2870380_2871331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	2899376	2961682	4133344	tRNA,transposase	Salmonella_phage(18.18%)	55	NA	NA
WP_005012067.1|2899376_2900327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2900425_2901196_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2901192_2901864_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2901860_2902502_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2902514_2903435_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2903595_2904756_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2904797_2905748_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2906412_2906613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2906735_2908430_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2908551_2908821_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2908936_2909335_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2909345_2910302_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2910438_2910984_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2911004_2912954_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2913341_2914118_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2914123_2914516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2914937_2915888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2915884_2916982_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2917013_2917964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2919750_2920992_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2921003_2921777_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_077598854.1|2921803_2922754_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2922852_2923635_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2923723_2924950_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2925675_2927061_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2927079_2927685_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2927681_2929538_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2929534_2930335_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2930349_2931543_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2931610_2932585_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2932707_2933931_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2934041_2936246_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2936540_2937200_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2937207_2937414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2937752_2938508_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2938523_2938685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2938778_2939294_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2939566_2939884_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2939828_2940473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2940598_2941954_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2942000_2943341_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2943442_2944075_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_111736002.1|2944074_2946435_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2946476_2947436_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2947422_2948109_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2948105_2948438_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2948553_2949504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2949500_2951567_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2951566_2951839_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2952533_2952623_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2952622_2954407_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2954430_2956596_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2956606_2957206_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2960027_2960723_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2960731_2961682_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	3047799	3088468	4133344	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_005012067.1|3047799_3048750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|3048860_3049043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|3049142_3049739_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|3049922_3051014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|3051513_3051924_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|3051982_3052324_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|3052329_3054747_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|3054759_3055782_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|3055856_3056216_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|3056231_3056429_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|3056764_3057715_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|3057909_3058359_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|3058355_3059306_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|3059416_3060865_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|3060979_3061261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3061364_3062315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|3062559_3063273_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|3063395_3063623_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|3063917_3064556_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|3064664_3065699_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|3065695_3066646_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|3067061_3067586_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|3067589_3067859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|3068057_3069119_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|3069202_3070837_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|3070838_3071642_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|3071670_3072630_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|3072633_3074148_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|3074184_3075189_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|3075620_3076091_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|3076126_3076738_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|3076768_3077392_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|3077472_3079005_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|3079039_3080281_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|3080324_3081356_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|3081352_3082522_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|3082515_3083196_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|3083357_3084200_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|3084362_3085334_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|3085505_3086384_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|3086406_3087477_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|3087517_3088468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	3143933	3216803	4133344	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|3143933_3144350_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|3144460_3145093_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|3145121_3145565_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|3145586_3146678_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|3146732_3147533_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|3147668_3148289_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|3148428_3148902_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077598854.1|3150041_3150992_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|3150988_3158650_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|3158890_3162937_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|3163249_3163831_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|3163827_3165126_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|3165205_3166234_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|3166494_3167445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3167441_3168392_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|3168708_3169314_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|3169367_3170681_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|3170755_3171226_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|3171225_3172014_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|3172024_3173677_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_005012067.1|3173764_3174715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|3175876_3176383_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|3176379_3177144_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|3177159_3177444_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|3177508_3178498_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|3178669_3179599_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|3179570_3180257_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|3180290_3180836_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|3180880_3182146_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|3182142_3183045_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|3184226_3185171_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|3185265_3186783_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|3186824_3188453_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|3188560_3189442_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|3192554_3192929_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|3192953_3193292_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|3193335_3194970_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|3195008_3196355_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|3196462_3197884_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|3197953_3198538_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|3198640_3199591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|3199725_3200832_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|3200842_3201940_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|3202084_3203290_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|3203296_3203818_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|3203814_3204306_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|3204302_3204554_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|3204534_3205020_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|3205155_3208617_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|3208634_3209519_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|3209528_3209960_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|3210206_3210710_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|3210787_3212188_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|3212262_3213138_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|3213134_3214142_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|3214609_3214915_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|3215005_3215596_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|3215786_3216803_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	3219946	3286756	4133344	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_010929956.1|3219946_3220897_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3220995_3221946_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|3221942_3222737_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|3222768_3223473_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|3223547_3224348_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|3224344_3224752_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|3224748_3225390_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|3225382_3227383_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|3228643_3229975_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|3229971_3230922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|3232628_3232895_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|3233602_3233941_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|3238493_3239096_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|3239192_3240482_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|3240539_3241271_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|3241267_3242071_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|3242067_3243156_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|3243152_3244082_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|3244230_3245376_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|3245397_3246348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|3246678_3250500_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|3250656_3251325_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|3251329_3253003_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|3253021_3254341_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|3254345_3256661_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|3256716_3258885_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|3258881_3264071_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|3264160_3264475_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|3264702_3264948_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|3265042_3265561_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|3265660_3266866_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|3266981_3268379_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|3268495_3269074_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|3269146_3270538_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|3270705_3271656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|3271936_3272557_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|3272553_3272967_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|3272963_3274007_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|3274062_3274251_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|3274260_3275025_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|3275115_3275772_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|3275863_3276622_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|3276647_3278249_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|3278449_3279454_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|3279554_3279818_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|3279935_3280712_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|3281302_3282253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|3284636_3285749_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|3285805_3286756_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	3317142	3360833	4133344	transposase	Planktothrix_phage(33.33%)	38	NA	NA
WP_005012067.1|3317142_3318093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|3318213_3319110_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3321387_3323613_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3323777_3324866_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3324822_3325476_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3325523_3326321_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3326852_3327803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|3327877_3329032_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3329088_3330039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3330137_3330443_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3330471_3330906_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3330907_3332152_-	aconitase X catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3332148_3332859_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3332873_3333785_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|3334147_3334552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3334548_3335007_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|3335013_3335922_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|3335918_3336785_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3336771_3337599_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3337609_3338737_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_010931152.1|3341094_3342357_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3342363_3343116_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3343167_3343353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3343628_3344093_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3344124_3344784_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3344928_3347037_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3347033_3347984_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3348087_3348708_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|3348799_3349552_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3350686_3351811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3351856_3352225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3352466_3353417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3354452_3354995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3355380_3356331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3356327_3357293_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3357362_3358199_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3358711_3359821_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3359882_3360833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	3545281	3618268	4133344	holin,tRNA,transposase	Xanthomonas_phage(14.29%)	59	NA	NA
WP_005012067.1|3545281_3546232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3546240_3546789_+	lipid IV(A) palmitoyltransferase PagP	NA	NA	NA	NA	NA
WP_003814557.1|3546785_3547394_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814558.1|3547576_3548047_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3548053_3549313_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3549365_3550178_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3550292_3550847_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_023998380.1|3550856_3551846_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3552025_3552745_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3552761_3555497_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3555676_3556663_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_010931255.1|3556791_3557199_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3557310_3558234_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3558462_3559647_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3559835_3561062_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3561066_3561888_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3561900_3562851_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3562847_3564254_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3564250_3565324_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3565320_3566514_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3566510_3568043_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3568039_3569209_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3569198_3572036_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3572032_3573763_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3573759_3574038_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3574037_3575132_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3575140_3575569_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3576371_3578180_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3578219_3579299_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3579295_3580489_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3580638_3580917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814593.1|3581245_3581638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3588362_3588839_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3588991_3590104_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3590171_3590732_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3590755_3591088_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3591071_3592760_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3592879_3593668_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3594375_3595326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3595770_3596082_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3596081_3596612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3596774_3597725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3598014_3598479_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3598493_3599999_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3600255_3601860_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3601915_3602821_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3603261_3604212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|3604350_3605103_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|3605341_3607066_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|3607085_3608345_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|3608359_3609454_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|3609450_3611577_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|3611589_3612270_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|3612547_3613921_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|3613922_3614942_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|3615005_3615977_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|3616041_3616992_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|3617090_3617933_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|3617932_3618268_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 27
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	3636691	3692892	4133344	integrase,tRNA,protease,transposase	Erwinia_phage(25.0%)	41	3675739:3675757	3695627:3695645
WP_010931291.1|3636691_3637231_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|3637252_3638587_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|3638600_3638906_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|3639330_3639912_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|3639993_3640944_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|3641042_3641993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3642305_3643784_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3643790_3644900_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3644911_3645592_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3645613_3646369_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3646504_3647389_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_004566249.1|3648291_3648591_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3648742_3649222_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3649941_3651378_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3651374_3651878_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3651893_3652844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3652942_3653893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3654420_3655194_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3655326_3656337_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3656488_3658144_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3658198_3658540_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3658553_3659993_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3660125_3660941_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3661134_3662085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3663472_3664420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3664646_3665387_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3665472_3666423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3667864_3669436_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3669768_3671622_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_019247178.1|3671666_3674231_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3674649_3675600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
3675739:3675757	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_077274087.1|3678465_3678960_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_005013747.1|3678976_3679927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931301.1|3680110_3681322_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3681337_3684289_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931303.1|3684290_3687410_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3687557_3688604_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3688945_3690073_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931306.1|3690352_3691444_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931307.1|3691516_3692299_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931308.1|3692295_3692892_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3695627:3695645	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 28
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	3741830	3795571	4133344	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3741830_3742781_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3743185_3743830_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3743854_3744439_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3744539_3745157_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3745159_3746875_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3746871_3747180_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3747196_3747814_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3747858_3748161_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3748261_3749116_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3749303_3749528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3749697_3749970_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3750387_3750795_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3751164_3751959_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3752059_3753295_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3753363_3754380_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3754391_3755768_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3755764_3756961_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3756957_3758496_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3758492_3759752_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3761692_3762643_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3763409_3764504_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3764496_3765831_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3765784_3766468_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3766493_3767657_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3767653_3768655_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3768654_3769527_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3769523_3770273_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3770269_3771061_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3771057_3772197_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3772472_3773258_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3773291_3774074_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3774077_3774467_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3775606_3776470_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3776505_3777594_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3777590_3778541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3778894_3781873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3782799_3783678_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3785626_3786577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3786573_3787041_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3787083_3787854_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3787874_3788675_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3788685_3790095_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3790189_3790975_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_111736001.1|3791214_3792231_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3792338_3792731_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3792868_3793549_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3793553_3794525_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3794620_3795571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	3801725	3861025	4133344	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3801725_3803489_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3803600_3804479_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3804591_3805407_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3805410_3805662_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3805746_3806763_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3807093_3807315_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3809675_3810593_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3811090_3812299_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3812378_3813950_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3814067_3815003_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3815191_3816136_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3816703_3822421_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3822426_3823554_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3823609_3824236_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_023853536.1|3824507_3825524_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3825619_3826330_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3826326_3827316_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3827411_3829043_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3829045_3829783_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3829938_3830811_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3831079_3832300_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3832296_3832956_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3833027_3833660_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3833689_3834208_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3834218_3835328_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3835374_3836229_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3836230_3837133_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929969.1|3838355_3839306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852630.1|3841062_3842052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3842048_3842207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3842227_3843016_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3843012_3844044_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3844062_3844626_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3844681_3846202_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3846465_3847170_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3847177_3847915_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3848020_3848395_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3848437_3849727_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3849723_3850893_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3850889_3851729_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3851788_3852724_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3852736_3853687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3853785_3854748_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3854779_3855139_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3855263_3856166_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3856167_3857940_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3857974_3858751_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3860074_3861025_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_LS483398	Bordetella pertussis strain NCTC10910 chromosome 1	4133344	3875963	3934036	4133344	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3875963_3876914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3877042_3878176_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3878219_3879125_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3879127_3880828_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3880824_3881745_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3881752_3882730_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3882788_3883823_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3885797_3886034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3886160_3887024_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3887112_3887934_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3888013_3888751_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3888747_3889740_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3889853_3890516_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3890560_3891709_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3894032_3894983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3895323_3896274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3896372_3897323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3897619_3898117_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3898159_3899935_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3899942_3900809_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3900815_3901550_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3902719_3903514_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3903803_3904394_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3904427_3905756_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3905830_3906976_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3907087_3908086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3908048_3908483_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3909999_3910884_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3910880_3912086_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3912082_3912943_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3913055_3914846_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3914886_3915552_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3915552_3915861_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3916026_3917313_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3918746_3919697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3921648_3922863_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3922968_3923958_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3923954_3924563_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3924575_3925205_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3925201_3925822_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3925853_3926645_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3927496_3927952_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3927970_3928897_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3928950_3930237_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3931167_3932040_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3932036_3932987_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3933085_3934036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
