assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475655.1_45076_A02	NZ_LS483404	Corynebacterium renale strain NCTC11140 chromosome 1	1	238364-238509	1	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	Orphan	AACTTAACACCTAACTTCACACATGTGTTGAGTAAGTGGGAAGCTG	46	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	NA,NA	NA|296aa|up_9|NZ_LS483404.1_226892_227780_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|489aa|up_8|NZ_LS483404.1_227789_229256_-	pfam17802, SpaA, Prealbumin-like fold domain	NA|508aa|up_7|NZ_LS483404.1_230747_232271_+	PRK14713, PRK14713, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA|218aa|up_6|NZ_LS483404.1_232270_232924_+	PRK00043, thiE, thiamine phosphate synthase	NA|376aa|up_5|NZ_LS483404.1_232914_234042_+	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|68aa|up_4|NZ_LS483404.1_234038_234242_+	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS	NA|264aa|up_3|NZ_LS483404.1_234243_235035_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|368aa|up_2|NZ_LS483404.1_235031_236135_+	PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated	NA|58aa|up_1|NZ_LS483404.1_236683_236857_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|474aa|up_0|NZ_LS483404.1_236935_238357_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|158aa|down_0|NZ_LS483404.1_238689_239163_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|398aa|down_1|NZ_LS483404.1_239163_240357_-	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|658aa|down_2|NZ_LS483404.1_240509_242483_+	smart00701, PGRP, Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme	NA|290aa|down_3|NZ_LS483404.1_242539_243409_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|303aa|down_4|NZ_LS483404.1_244085_244994_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|417aa|down_5|NZ_LS483404.1_244990_246241_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|347aa|down_6|NZ_LS483404.1_246312_247353_+	pfam13845, Septum_form, Septum formation	NA|116aa|down_7|NZ_LS483404.1_247362_247710_+	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein	NA|293aa|down_8|NZ_LS483404.1_248532_249411_-	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|223aa|down_9|NZ_LS483404.1_249484_250153_+	pfam02517, Abi, CAAX protease self-immunity
GCF_900475655.1_45076_A02	NZ_LS483404	Corynebacterium renale strain NCTC11140 chromosome 1	2	488156-490318	2,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	Type I-E	GGCTCATCCCCGCGTGTGCGGGGAACAC,GGCTCATCCCCGCGTGTGCGGGGAACAC,GGCTCATCCCCGCGTGTGCGGGGAACAC,GGCTCATCCCCGCGTGTGCGGGGAACAC	28,28,28,28	0	0	NA	NA	I-E:I-E:I-E:I-E	35,35,34,34	35	TypeI-E	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	NA|78aa|up_9|NZ_LS483404.1_472964_473198_+,NA|398aa|down_8|NZ_LS483404.1_499916_501110_+,NA|65aa|down_9|NZ_LS483404.1_501170_501365_+	NA|78aa|up_9|NZ_LS483404.1_472964_473198_+	NA	NA|554aa|up_8|NZ_LS483404.1_473181_474843_+	pfam10088, DUF2326, Uncharacterized protein conserved in bacteria (DUF2326)	NA|81aa|up_7|NZ_LS483404.1_474835_475078_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|695aa|up_6|NZ_LS483404.1_475091_477176_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|420aa|up_5|NZ_LS483404.1_477172_478432_+	cd17266, RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Staphylococcus aureus subsp	NA|1005aa|up_4|NZ_LS483404.1_478428_481443_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|213aa|up_3|NZ_LS483404.1_483524_484163_+	pfam02661, Fic, Fic/DOC family	NA|109aa|up_2|NZ_LS483404.1_484485_484812_+	pfam05534, HicB, HicB family	NA|592aa|up_1|NZ_LS483404.1_484865_486641_-	PRK10150, PRK10150, beta-D-glucuronidase; Provisional	NA|440aa|up_0|NZ_LS483404.1_486712_488032_-	cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like	cas3|910aa|down_0|NZ_LS483404.1_490709_493439_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|567aa|down_1|NZ_LS483404.1_493500_495201_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|212aa|down_2|NZ_LS483404.1_495193_495829_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|379aa|down_3|NZ_LS483404.1_495854_496991_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|241aa|down_4|NZ_LS483404.1_496990_497713_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|down_5|NZ_LS483404.1_497709_498414_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|313aa|down_6|NZ_LS483404.1_498415_499354_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|114aa|down_7|NZ_LS483404.1_499350_499692_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|398aa|down_8|NZ_LS483404.1_499916_501110_+	NA	NA|65aa|down_9|NZ_LS483404.1_501170_501365_+	NA
GCF_900475655.1_45076_A02	NZ_LS483404	Corynebacterium renale strain NCTC11140 chromosome 1	3	567506-567601	3	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	Orphan	GGGGCACGTTTCGCACCCAGACG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	NA,NA	NA|303aa|up_9|NZ_LS483404.1_554653_555562_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|173aa|up_8|NZ_LS483404.1_555558_556077_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|300aa|up_7|NZ_LS483404.1_556095_556995_-	pfam18741, MTES_1575, REase_MTES_1575	NA|265aa|up_6|NZ_LS483404.1_557574_558369_-	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|283aa|up_5|NZ_LS483404.1_558381_559230_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|356aa|up_4|NZ_LS483404.1_559395_560463_+	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|314aa|up_3|NZ_LS483404.1_560459_561401_-	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|343aa|up_2|NZ_LS483404.1_562585_563614_-	PRK03321, PRK03321, putative aminotransferase; Provisional	NA|453aa|up_1|NZ_LS483404.1_563898_565257_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|525aa|up_0|NZ_LS483404.1_565332_566907_+	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|318aa|down_0|NZ_LS483404.1_567876_568830_-	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|158aa|down_1|NZ_LS483404.1_568867_569341_+	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein	NA|144aa|down_2|NZ_LS483404.1_569351_569783_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|58aa|down_3|NZ_LS483404.1_570022_570196_+	pfam05532, CsbD, CsbD-like	NA|80aa|down_4|NZ_LS483404.1_570206_570446_+	pfam05532, CsbD, CsbD-like	NA|793aa|down_5|NZ_LS483404.1_571512_573891_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|454aa|down_6|NZ_LS483404.1_574388_575750_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|130aa|down_7|NZ_LS483404.1_575756_576146_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|239aa|down_8|NZ_LS483404.1_576205_576922_-	pfam02592, Vut_1, Putative vitamin uptake transporter	NA|300aa|down_9|NZ_LS483404.1_576950_577850_+	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS
GCF_900475655.1_45076_A02	NZ_LS483404	Corynebacterium renale strain NCTC11140 chromosome 1	4	1275065-1275226	4	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	Orphan	GATCGTGGTGGCTACCGTGGTGGTCGTGATCGCGATGATCGTGGCGGACGT	51	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	NA|218aa|up_7|NZ_LS483404.1_1262902_1263556_-,NA|254aa|up_6|NZ_LS483404.1_1263945_1264707_+,NA|173aa|up_5|NZ_LS483404.1_1264752_1265271_-,NA|167aa|down_0|NZ_LS483404.1_1275359_1275860_-	NA|1239aa|up_9|NZ_LS483404.1_1255327_1259044_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|1249aa|up_8|NZ_LS483404.1_1259166_1262913_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|218aa|up_7|NZ_LS483404.1_1262902_1263556_-	NA	NA|254aa|up_6|NZ_LS483404.1_1263945_1264707_+	NA	NA|173aa|up_5|NZ_LS483404.1_1264752_1265271_-	NA	NA|455aa|up_4|NZ_LS483404.1_1265382_1266747_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|542aa|up_3|NZ_LS483404.1_1266748_1268374_-	TIGR02868, ABC_transporter_ATP-binding_protein, thiol reductant ABC exporter, CydC subunit	NA|512aa|up_2|NZ_LS483404.1_1268370_1269906_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|345aa|up_1|NZ_LS483404.1_1270073_1271108_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|528aa|up_0|NZ_LS483404.1_1271128_1272712_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|167aa|down_0|NZ_LS483404.1_1275359_1275860_-	NA	NA|214aa|down_1|NZ_LS483404.1_1275973_1276615_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|522aa|down_2|NZ_LS483404.1_1276664_1278230_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|1037aa|down_3|NZ_LS483404.1_1278516_1281627_+	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|321aa|down_4|NZ_LS483404.1_1281630_1282593_+	COG4279, COG4279, Uncharacterized conserved protein [Function unknown]	NA|380aa|down_5|NZ_LS483404.1_1282653_1283793_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|875aa|down_6|NZ_LS483404.1_1283807_1286432_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|177aa|down_7|NZ_LS483404.1_1286526_1287057_-	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]	NA|174aa|down_8|NZ_LS483404.1_1287240_1287762_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|66aa|down_9|NZ_LS483404.1_1287883_1288081_+	pfam04024, PspC, PspC domain
GCF_900475655.1_45076_A02	NZ_LS483404	Corynebacterium renale strain NCTC11140 chromosome 1	5	1748026-1748124	5	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	Orphan	CCACCGCGACGGCCACCACGGCCT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,cas4,DinG	NA,NA|298aa|down_3|NZ_LS483404.1_1751241_1752135_+	NA|777aa|up_9|NZ_LS483404.1_1735592_1737923_-	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	NA|90aa|up_8|NZ_LS483404.1_1738102_1738372_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|312aa|up_7|NZ_LS483404.1_1738465_1739401_-	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|342aa|up_6|NZ_LS483404.1_1739502_1740528_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|298aa|up_5|NZ_LS483404.1_1740599_1741493_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|233aa|up_4|NZ_LS483404.1_1741521_1742220_-	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|273aa|up_3|NZ_LS483404.1_1742221_1743040_-	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|445aa|up_2|NZ_LS483404.1_1743083_1744418_-	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|334aa|up_1|NZ_LS483404.1_1744417_1745419_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|146aa|up_0|NZ_LS483404.1_1745437_1745875_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|125aa|down_0|NZ_LS483404.1_1749029_1749404_-	pfam04296, DUF448, Protein of unknown function (DUF448)	NA|353aa|down_1|NZ_LS483404.1_1749549_1750608_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|195aa|down_2|NZ_LS483404.1_1750619_1751204_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|298aa|down_3|NZ_LS483404.1_1751241_1752135_+	NA	NA|587aa|down_4|NZ_LS483404.1_1752216_1753977_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|243aa|down_5|NZ_LS483404.1_1754008_1754737_+	PRK02101, PRK02101, peroxide stress protein YaaA	NA|418aa|down_6|NZ_LS483404.1_1754750_1756004_+	PRK00029, PRK00029, YdiU family protein	NA|501aa|down_7|NZ_LS483404.1_1756053_1757556_-	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo)	NA|336aa|down_8|NZ_LS483404.1_1757892_1758900_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|460aa|down_9|NZ_LS483404.1_1758911_1760291_+	PRK07846, PRK07846, mycothione reductase; Reviewed
