assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475565.1_42912_A01	NZ_LS483394	Streptococcus pyogenes strain NCTC10880 chromosome 1	1	118099-118320	1,1	PILER-CR,CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Orphan	AGAGTTAGATGGACAAGAAGTCCCAGAAGTTCCAAGCGAGAGCTTAGAACC,TTCCCCCATTGATGCCAGAGCTAGATGG	51,28	0	0	NA	NA	NA:NA	2,1	2	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA,NA|222aa|down_8|NZ_LS483394.1_131366_132032_-	NA|257aa|up_9|NZ_LS483394.1_108456_109227_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|356aa|up_8|NZ_LS483394.1_109274_110342_-	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase	NA|98aa|up_7|NZ_LS483394.1_110797_111091_+	pfam15513, DUF4651, Domain of unknown function (DUF4651)	NA|106aa|up_6|NZ_LS483394.1_111087_111405_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_5|NZ_LS483394.1_111422_112049_+	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|132aa|up_4|NZ_LS483394.1_112200_112596_+	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|214aa|up_3|NZ_LS483394.1_112855_113497_-	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|326aa|up_2|NZ_LS483394.1_113516_114494_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|291aa|up_1|NZ_LS483394.1_114480_115353_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|498aa|up_0|NZ_LS483394.1_115499_116993_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|283aa|down_0|NZ_LS483394.1_119463_120312_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|755aa|down_1|NZ_LS483394.1_120597_122862_+	NF033396, pilus_ancill_1, pilus ancillary protein 1	NA|174aa|down_2|NZ_LS483394.1_122854_123376_+	TIGR02227, Inactive_signal_peptidase_IA	NA|343aa|down_3|NZ_LS483394.1_123397_124426_+	TIGR03786, strep_pil_rpt, streptococcal pilin isopeptide linkage domain	NA|242aa|down_4|NZ_LS483394.1_124441_125167_+	TIGR03064, sortase_srtB, sortase, SrtB family	NA|196aa|down_5|NZ_LS483394.1_125183_125771_+	TIGR03786, strep_pil_rpt, streptococcal pilin isopeptide linkage domain	NA|402aa|down_6|NZ_LS483394.1_125913_127119_-	TIGR04094, AraC_family_transcriptional_regulator, YSIRK-targeted surface antigen transcriptional regulator	NA|1199aa|down_7|NZ_LS483394.1_127503_131100_+	NF033395, fibronec_SfbI, fibronectin-binding protein SfbI	NA|222aa|down_8|NZ_LS483394.1_131366_132032_-	NA	NA|469aa|down_9|NZ_LS483394.1_132384_133791_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]
GCF_900475565.1_42912_A01	NZ_LS483394	Streptococcus pyogenes strain NCTC10880 chromosome 1	2	360929-361003	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Orphan	CTCAGGATAGAGAACATCAGACAG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA,NA|158aa|down_0|NZ_LS483394.1_361360_361834_+,NA|111aa|down_1|NZ_LS483394.1_365594_365927_+,NA|84aa|down_2|NZ_LS483394.1_366166_366418_+	NA|119aa|up_9|NZ_LS483394.1_343317_343674_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|276aa|up_8|NZ_LS483394.1_343747_344575_-	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases	NA|394aa|up_7|NZ_LS483394.1_344809_345991_+	TIGR02708, lactate_oxidase, L-lactate oxidase	NA|1648aa|up_6|NZ_LS483394.1_346256_351200_+	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|236aa|up_5|NZ_LS483394.1_351970_352678_+	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|667aa|up_4|NZ_LS483394.1_352917_354918_+	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	NA|338aa|up_3|NZ_LS483394.1_355416_356430_+	PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional	NA|163aa|up_2|NZ_LS483394.1_356433_356922_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|727aa|up_1|NZ_LS483394.1_356888_359069_+	PRK07187, PRK07187, ribonucleoside-diphosphate reductase subunit alpha	NA|251aa|up_0|NZ_LS483394.1_359274_360027_-	cd00233, VIP2, VIP2; A family of actin-ADP-ribosylating toxin	NA|158aa|down_0|NZ_LS483394.1_361360_361834_+	NA	NA|111aa|down_1|NZ_LS483394.1_365594_365927_+	NA	NA|84aa|down_2|NZ_LS483394.1_366166_366418_+	NA	NA|215aa|down_3|NZ_LS483394.1_366511_367156_-	pfam06886, TPX2, Targeting protein for Xklp2 (TPX2)	NA|79aa|down_4|NZ_LS483394.1_367516_367753_+	pfam11195, DUF2829, Protein of unknown function (DUF2829)	NA|233aa|down_5|NZ_LS483394.1_367745_368444_+	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|320aa|down_6|NZ_LS483394.1_368519_369479_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|446aa|down_7|NZ_LS483394.1_369811_371149_+	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters	NA|461aa|down_8|NZ_LS483394.1_371321_372704_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|185aa|down_9|NZ_LS483394.1_372734_373289_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate
GCF_900475565.1_42912_A01	NZ_LS483394	Streptococcus pyogenes strain NCTC10880 chromosome 1	3	365251-365340	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Orphan	AGGATTCTTTGGAAGGACCTACTG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA|209aa|up_1|NZ_LS483394.1_360483_361110_+,NA|158aa|up_0|NZ_LS483394.1_361360_361834_+,NA|111aa|down_0|NZ_LS483394.1_365594_365927_+,NA|84aa|down_1|NZ_LS483394.1_366166_366418_+,NA|84aa|down_9|NZ_LS483394.1_373288_373540_+	NA|394aa|up_9|NZ_LS483394.1_344809_345991_+	TIGR02708, lactate_oxidase, L-lactate oxidase	NA|1648aa|up_8|NZ_LS483394.1_346256_351200_+	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|236aa|up_7|NZ_LS483394.1_351970_352678_+	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|667aa|up_6|NZ_LS483394.1_352917_354918_+	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	NA|338aa|up_5|NZ_LS483394.1_355416_356430_+	PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional	NA|163aa|up_4|NZ_LS483394.1_356433_356922_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|727aa|up_3|NZ_LS483394.1_356888_359069_+	PRK07187, PRK07187, ribonucleoside-diphosphate reductase subunit alpha	NA|251aa|up_2|NZ_LS483394.1_359274_360027_-	cd00233, VIP2, VIP2; A family of actin-ADP-ribosylating toxin	NA|209aa|up_1|NZ_LS483394.1_360483_361110_+	NA	NA|158aa|up_0|NZ_LS483394.1_361360_361834_+	NA	NA|111aa|down_0|NZ_LS483394.1_365594_365927_+	NA	NA|84aa|down_1|NZ_LS483394.1_366166_366418_+	NA	NA|215aa|down_2|NZ_LS483394.1_366511_367156_-	pfam06886, TPX2, Targeting protein for Xklp2 (TPX2)	NA|79aa|down_3|NZ_LS483394.1_367516_367753_+	pfam11195, DUF2829, Protein of unknown function (DUF2829)	NA|233aa|down_4|NZ_LS483394.1_367745_368444_+	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|320aa|down_5|NZ_LS483394.1_368519_369479_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|446aa|down_6|NZ_LS483394.1_369811_371149_+	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters	NA|461aa|down_7|NZ_LS483394.1_371321_372704_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|185aa|down_8|NZ_LS483394.1_372734_373289_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|84aa|down_9|NZ_LS483394.1_373288_373540_+	NA
GCF_900475565.1_42912_A01	NZ_LS483394	Streptococcus pyogenes strain NCTC10880 chromosome 1	4	772730-773095	2,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Type II-A,Type II-C,Type II-B	GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGNTGTTTTGAATGGTCCCAAAAC	36,36,36	1	1	773030-773059	NZ_LS483394.1_1132680-1132651	II-A,II-B:II-A,II-B:II-A	4,5,5	5	TypeII-A,TypeII-C,TypeII-B	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA|214aa|up_8|NZ_LS483394.1_762190_762832_+,NA	NA|452aa|up_9|NZ_LS483394.1_760711_762067_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_LS483394.1_762190_762832_+	NA	NA|377aa|up_7|NZ_LS483394.1_762894_764025_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_LS483394.1_764034_764787_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_LS483394.1_764786_765551_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_LS483394.1_765550_766183_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_LS483394.1_766661_770768_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_LS483394.1_770767_771637_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_LS483394.1_771633_771975_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_LS483394.1_771964_772627_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|NZ_LS483394.1_773739_775572_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|452aa|down_1|NZ_LS483394.1_775732_777088_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_2|NZ_LS483394.1_777273_777711_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_LS483394.1_777840_778860_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_LS483394.1_779066_779492_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_LS483394.1_779518_780010_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_LS483394.1_780026_780836_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_LS483394.1_780832_781660_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_LS483394.1_781795_783445_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_LS483394.1_783448_784237_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
