assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475545.1_44310_G02	NZ_LS483393	Clostridium perfringens strain NCTC13170 chromosome 1	1	334376-334464	1	CRISPRCasFinder	no		csx1,DEDDh,cas14j,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	Orphan	AGTTTTATATAAATCAATATAAA	23	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,cas14j,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	NA|71aa|up_2|NZ_LS483393.1_332133_332346_+,NA|99aa|up_0|NZ_LS483393.1_333997_334294_-,NA	NA|83aa|up_9|NZ_LS483393.1_325357_325606_+	pfam07875, Coat_F, Coat F domain	NA|244aa|up_8|NZ_LS483393.1_326141_326873_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|381aa|up_7|NZ_LS483393.1_327088_328231_+	COG4748, COG4748, Uncharacterized conserved protein [Function unknown]	NA|205aa|up_6|NZ_LS483393.1_328489_329104_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|169aa|up_5|NZ_LS483393.1_329323_329830_+	COG1329, COG1329, Transcriptional regulators, similar to M	NA|379aa|up_4|NZ_LS483393.1_330013_331150_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|208aa|up_3|NZ_LS483393.1_331146_331770_+	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|71aa|up_2|NZ_LS483393.1_332133_332346_+	NA	NA|437aa|up_1|NZ_LS483393.1_332466_333777_-	pfam07613, DUF1576, Protein of unknown function (DUF1576)	NA|99aa|up_0|NZ_LS483393.1_333997_334294_-	NA	NA|226aa|down_0|NZ_LS483393.1_334501_335179_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|156aa|down_1|NZ_LS483393.1_342020_342488_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|249aa|down_2|NZ_LS483393.1_343169_343916_+	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|271aa|down_3|NZ_LS483393.1_344379_345192_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|391aa|down_4|NZ_LS483393.1_345209_346382_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|428aa|down_5|NZ_LS483393.1_346395_347679_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins	NA|412aa|down_6|NZ_LS483393.1_347697_348933_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins	NA|394aa|down_7|NZ_LS483393.1_348946_350128_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|478aa|down_8|NZ_LS483393.1_350242_351676_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins	NA|218aa|down_9|NZ_LS483393.1_351812_352466_-	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]
GCF_900475545.1_44310_G02	NZ_LS483393	Clostridium perfringens strain NCTC13170 chromosome 1	2	1100041-1100243	2	CRISPRCasFinder	no		csx1,DEDDh,cas14j,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	Orphan	TTTTAAACAATATTTGCTTTTAGGT	25	0	0	NA	NA	NA	3	3	Orphan	csx1,DEDDh,cas14j,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	NA,NA|104aa|down_1|NZ_LS483393.1_1101285_1101597_+,NA|163aa|down_5|NZ_LS483393.1_1105300_1105789_+,NA|241aa|down_8|NZ_LS483393.1_1108489_1109212_+	NA|493aa|up_9|NZ_LS483393.1_1091984_1093463_+	TIGR02518, Acetaldehyde_dehydrogenase_acetylating, acetaldehyde dehydrogenase (acetylating)	NA|97aa|up_8|NZ_LS483393.1_1093817_1094108_+	cd07059, BMC_PduA, 1,2-propanediol utilization protein A (PduA), Bacterial Micro-Compartment (BMC) domain	NA|259aa|up_7|NZ_LS483393.1_1094185_1094962_+	COG4812, EutT, Ethanolamine utilization cobalamin adenosyltransferase [Amino acid transport and metabolism]	NA|212aa|up_6|NZ_LS483393.1_1094971_1095607_+	PRK15070, PRK15070, phosphate propanoyltransferase	NA|253aa|up_5|NZ_LS483393.1_1095814_1096573_+	TIGR02536, putative_ethanolamine_utilization_protein, ethanolamine utilization protein	NA|91aa|up_4|NZ_LS483393.1_1096719_1096992_+	pfam03319, EutN_CcmL, Ethanolamine utilisation protein EutN/carboxysome	NA|185aa|up_3|NZ_LS483393.1_1096993_1097548_+	TIGR02526, putative_ethanolamine_utilization_protein, PduT-like ethanolamine utilization protein	NA|366aa|up_2|NZ_LS483393.1_1097598_1098696_+	PRK15086, PRK15086, ethanolamine utilization protein EutH; Provisional	NA|158aa|up_1|NZ_LS483393.1_1098698_1099172_+	pfam06249, EutQ, Ethanolamine utilisation protein EutQ	NA|159aa|up_0|NZ_LS483393.1_1099539_1100016_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|182aa|down_0|NZ_LS483393.1_1100448_1100994_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|104aa|down_1|NZ_LS483393.1_1101285_1101597_+	NA	NA|547aa|down_2|NZ_LS483393.1_1101910_1103551_+	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]	NA|207aa|down_3|NZ_LS483393.1_1103632_1104253_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|142aa|down_4|NZ_LS483393.1_1104695_1105121_+	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase	NA|163aa|down_5|NZ_LS483393.1_1105300_1105789_+	NA	NA|604aa|down_6|NZ_LS483393.1_1106028_1107840_+	PRK08270, PRK08270, ribonucleoside triphosphate reductase	NA|153aa|down_7|NZ_LS483393.1_1107836_1108295_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|241aa|down_8|NZ_LS483393.1_1108489_1109212_+	NA	NA|355aa|down_9|NZ_LS483393.1_1109881_1110946_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons
GCF_900475545.1_44310_G02	NZ_LS483393	Clostridium perfringens strain NCTC13170 chromosome 1	3	1705196-1706285	3,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no	cas3,cas2,cas1,cas9	csx1,DEDDh,cas14j,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	Type II-A,Type II-C,,Type II-B	GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT,GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT,AACACTGTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT,GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT,CAAGGTTATAGTTCCTAGTAAATTCTCGATATGCTATAATAA	36,36,42,36,42	1	1	1706154-1706177	NZ_LS483393.1_2496836-2496813	NA:NA:NA:NA:NA	16,16,11,11,11	16	,TypeII-A,TypeII-C,TypeII-B	csx1,DEDDh,cas14j,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	NA|432aa|up_6|NZ_LS483393.1_1692364_1693660_-,NA|177aa|up_5|NZ_LS483393.1_1693674_1694205_-,NA|292aa|up_3|NZ_LS483393.1_1698365_1699241_-,NA|103aa|down_4|NZ_LS483393.1_1714639_1714948_-,NA|226aa|down_8|NZ_LS483393.1_1720234_1720912_-	NA|389aa|up_9|NZ_LS483393.1_1685748_1686915_-	cd08179, NADPH_BDH, NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria	NA|484aa|up_8|NZ_LS483393.1_1687027_1688479_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|956aa|up_7|NZ_LS483393.1_1689086_1691954_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|432aa|up_6|NZ_LS483393.1_1692364_1693660_-	NA	NA|177aa|up_5|NZ_LS483393.1_1693674_1694205_-	NA	cas3|1366aa|up_4|NZ_LS483393.1_1694223_1698321_-	cd17923, DEXHc_Hrq1-like, DEAH-box helicase domain of Hrq1 and similar proteins	NA|292aa|up_3|NZ_LS483393.1_1698365_1699241_-	NA	NA|319aa|up_2|NZ_LS483393.1_1699245_1700202_-	pfam08902, DUF1848, Domain of unknown function (DUF1848)	NA|677aa|up_1|NZ_LS483393.1_1700426_1702457_-	TIGR02653, putative_ATP-dependent_Lon_protease, conserved hypothetical protein	NA|851aa|up_0|NZ_LS483393.1_1702564_1705117_-	TIGR02687, conserved_hypothetical_protein, TIGR02687 family protein	cas2|103aa|down_0|NZ_LS483393.1_1706333_1706642_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|300aa|down_1|NZ_LS483393.1_1706649_1707549_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1066aa|down_2|NZ_LS483393.1_1707549_1710747_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|1201aa|down_3|NZ_LS483393.1_1711026_1714629_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|103aa|down_4|NZ_LS483393.1_1714639_1714948_-	NA	NA|1222aa|down_5|NZ_LS483393.1_1714973_1718639_-	NF033441, BREX_BrxC, BREX system P-loop protein BrxC	NA|194aa|down_6|NZ_LS483393.1_1718703_1719285_-	pfam08747, DUF1788, Domain of unknown function (DUF1788)	NA|198aa|down_7|NZ_LS483393.1_1719462_1720056_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|226aa|down_8|NZ_LS483393.1_1720234_1720912_-	NA	NA|257aa|down_9|NZ_LS483393.1_1721209_1721980_-	pfam07553, Lipoprotein_Ltp, Host cell surface-exposed lipoprotein
GCF_900475545.1_44310_G02	NZ_LS483393	Clostridium perfringens strain NCTC13170 chromosome 1	4	2361759-2361871	4	CRISPRCasFinder	no		csx1,DEDDh,cas14j,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	Orphan	TTCTATTTAAATCTATTACTTTACATAA	28	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,cas14j,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	NA,NA|121aa|down_0|NZ_LS483393.1_2361940_2362303_-,NA|116aa|down_2|NZ_LS483393.1_2363144_2363492_-,NA|147aa|down_3|NZ_LS483393.1_2363488_2363929_-,NA|204aa|down_4|NZ_LS483393.1_2363888_2364500_-,NA|137aa|down_5|NZ_LS483393.1_2364474_2364885_-,NA|99aa|down_6|NZ_LS483393.1_2364871_2365168_-	NA|136aa|up_9|NZ_LS483393.1_2355558_2355966_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|up_8|NZ_LS483393.1_2356084_2356474_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|166aa|up_7|NZ_LS483393.1_2356558_2357056_-	pfam12685, SpoIIIAH, SpoIIIAH-like protein	NA|202aa|up_6|NZ_LS483393.1_2357081_2357687_-	TIGR02830, Stage_III_sporulation_protein_AG, stage III sporulation protein AG	NA|186aa|up_5|NZ_LS483393.1_2357701_2358259_-	TIGR02896, Stage_III_sporulation_protein_AF, stage III sporulation protein AF	NA|391aa|up_4|NZ_LS483393.1_2358266_2359439_-	TIGR02829, Stage_III_sporulation_protein_AE, stage III sporulation protein AE	NA|129aa|up_3|NZ_LS483393.1_2359449_2359836_-	TIGR02849, Stage_III_sporulation_protein_AD, stage III sporulation protein AD	NA|66aa|up_2|NZ_LS483393.1_2359923_2360121_-	TIGR02848, Stage_III_sporulation_protein_AC, stage III sporulation protein AC	NA|172aa|up_1|NZ_LS483393.1_2360196_2360712_-	TIGR02833, Stage_III_sporulation_protein_AB, stage III sporulation protein AB	NA|295aa|up_0|NZ_LS483393.1_2360858_2361743_-	TIGR02858, Stage_III_sporulation_protein_AA, stage III sporulation protein AA	NA|121aa|down_0|NZ_LS483393.1_2361940_2362303_-	NA	NA|186aa|down_1|NZ_LS483393.1_2362416_2362974_-	PRK00529, PRK00529, elongation factor P; Validated	NA|116aa|down_2|NZ_LS483393.1_2363144_2363492_-	NA	NA|147aa|down_3|NZ_LS483393.1_2363488_2363929_-	NA	NA|204aa|down_4|NZ_LS483393.1_2363888_2364500_-	NA	NA|137aa|down_5|NZ_LS483393.1_2364474_2364885_-	NA	NA|99aa|down_6|NZ_LS483393.1_2364871_2365168_-	NA	NA|171aa|down_7|NZ_LS483393.1_2365302_2365815_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|143aa|down_8|NZ_LS483393.1_2365834_2366263_-	PRK10557, PRK10557, prepilin peptidase-dependent protein	NA|340aa|down_9|NZ_LS483393.1_2366255_2367275_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
