The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483365	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome 1	2830002	709022	716842	2830002		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|709022_710078_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|710077_710764_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|710738_711212_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|711553_711994_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|712273_712858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|712956_713670_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|713673_714093_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|714094_714763_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|715113_715707_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|715690_716842_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_LS483365	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome 1	2830002	728814	743545	2830002		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|728814_729873_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|730223_730766_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|731389_732307_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|732397_732499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|732576_734082_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|734422_734923_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|734942_735809_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|736609_737008_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|736970_739076_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|739193_740165_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|740678_740834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|740872_741844_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245578.1|741830_742787_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|742783_743545_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_LS483365	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome 1	2830002	987950	996423	2830002		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|987950_988433_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|988419_989544_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|989547_990252_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|990251_990515_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|990516_991188_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|991180_993370_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|993348_994833_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|994825_995854_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|995856_996423_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 4
NZ_LS483365	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome 1	2830002	1434934	1522814	2830002	tRNA,plate,capsid,protease,terminase,head,holin,integrase,portal,tail	Staphylococcus_phage(56.41%)	108	1471175:1471199	1517207:1517231
WP_000858789.1|1434934_1436227_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1436548_1439242_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049911.1|1439265_1440237_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1440223_1441426_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1441430_1442573_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1442813_1443131_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1443467_1444148_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1444219_1444807_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005213.1|1444796_1445372_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1445385_1446630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1446636_1447935_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776325.1|1447944_1449009_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1449034_1450201_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1450586_1450787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1450995_1451445_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1451536_1452496_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1452497_1453223_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1453225_1453798_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1454228_1454501_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1454671_1455670_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1455686_1456997_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1457218_1458394_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1458650_1458842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1458958_1459075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1459105_1459765_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1459841_1460810_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1460924_1461911_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_011447014.1|1462071_1462188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1462312_1463773_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1463925_1465305_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1465294_1466248_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1466355_1466604_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1466709_1467255_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1467533_1467653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1467851_1468766_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1468780_1468987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472939.1|1468979_1469930_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1469987_1470905_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_170267452.1|1470995_1471211_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.5e-25
1471175:1471199	attL	TAAACATATCGTCATAATGTGATGG	NA	NA	NA	NA
WP_000675478.1|1471587_1472424_-	hypothetical protein	NA	D2JLG6	Staphylococcus_phage	100.0	8.4e-152
WP_000909202.1|1473039_1474494_-	N-acetylmuramoyl-L-alanine amidase	NA	Q8SDN4	Staphylococcus_virus	100.0	8.8e-290
WP_000339144.1|1474504_1474807_-|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_000466784.1|1474942_1475242_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1475287_1475452_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1475444_1475834_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067148.1|1475833_1477300_-|plate	phage baseplate upper protein	plate	Q8SDN8	Staphylococcus_virus	100.0	3.4e-257
WP_000429551.1|1477299_1479210_-	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000179862.1|1479225_1479516_-	hypothetical protein	NA	Q8SDP0	Staphylococcus_virus	100.0	2.1e-49
WP_000384462.1|1479515_1481099_-|tail	phage tail protein	tail	Q8SDP1	Staphylococcus_virus	100.0	7.1e-309
WP_001190533.1|1481107_1481932_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003443.1|1481931_1488132_-|tail	phage tail tape measure protein	tail	Q8SDP3	Staphylococcus_virus	100.0	0.0e+00
WP_000438833.1|1488145_1488304_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1488345_1488696_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169128.1|1488753_1489209_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1489300_1489942_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1489976_1490372_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1490372_1490774_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1490770_1491103_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1491114_1491393_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1491461_1492625_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1492636_1493410_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100665.1|1493393_1494632_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	100.0	1.2e-234
WP_000153543.1|1494636_1496328_-|terminase	terminase large subunit	terminase	Q4ZD20	Staphylococcus_virus	99.8	0.0e+00
WP_000778933.1|1496317_1496623_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160683.1|1496744_1497059_-	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	100.0	1.9e-56
WP_000513703.1|1497215_1497653_-	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	99.3	7.9e-77
WP_001795330.1|1497665_1499033_-	DEAD/DEAH box helicase	NA	Q4ZCF6	Staphylococcus_virus	100.0	4.6e-264
WP_000665203.1|1499013_1499304_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_011447017.1|1499437_1499542_+	hypothetical protein	NA	Q4ZCF8	Staphylococcus_virus	100.0	9.4e-13
WP_000884854.1|1499644_1502092_-	virulence-associated E family protein	NA	Q4ZCG0	Staphylococcus_virus	100.0	0.0e+00
WP_000265258.1|1502143_1502344_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000237866.1|1502411_1502564_-	transcriptional activator RinB	NA	A0A2I6PF16	Staphylococcus_phage	98.0	5.8e-19
WP_001125015.1|1502566_1502767_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195837.1|1502741_1502930_-	DUF1381 domain-containing protein	NA	Q4ZCG4	Staphylococcus_virus	100.0	1.6e-26
WP_000185654.1|1502966_1503509_-	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
WP_001065023.1|1503513_1503750_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000144708.1|1503742_1504051_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
WP_000979209.1|1504047_1504395_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695759.1|1504391_1504793_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	100.0	7.0e-72
WP_000693987.1|1504795_1505002_-	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
WP_015968801.1|1505015_1505264_-	PVL orf 51-like protein	NA	Q8SDR2	Staphylococcus_virus	100.0	1.8e-41
WP_000235381.1|1505272_1505473_-	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	100.0	1.3e-29
WP_000111489.1|1505475_1505733_-	DUF3310 domain-containing protein	NA	Q8SDR4	Staphylococcus_virus	100.0	4.4e-43
WP_000113981.1|1505732_1506134_-	PVL family protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1506133_1506319_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001796208.1|1506331_1508284_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_000645042.1|1508352_1508910_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_000762540.1|1508935_1510102_-	DUF2800 domain-containing protein	NA	Q8SDR9	Staphylococcus_virus	100.0	7.0e-221
WP_000279452.1|1510098_1510461_-	hypothetical protein	NA	Q4ZCH9	Staphylococcus_virus	100.0	2.9e-56
WP_000174996.1|1510475_1510799_-	hypothetical protein	NA	B7T0G4	Staphylococcus_virus	100.0	8.5e-52
WP_001285961.1|1510877_1511039_-	DUF1270 domain-containing protein	NA	Q4ZCI2	Staphylococcus_virus	100.0	1.9e-20
WP_001124160.1|1511051_1511315_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|1511339_1511555_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001131647.1|1511609_1511975_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	97.5	1.7e-61
WP_001025402.1|1511943_1512189_-	DUF2829 domain-containing protein	NA	Q8SDS1	Staphylococcus_virus	100.0	1.1e-40
WP_000854072.1|1512204_1512468_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|1512464_1512638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|1512600_1513314_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|1513329_1514262_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|1514267_1514609_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705240.1|1514812_1514995_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|1515031_1515178_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|1515174_1515789_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000264748.1|1515914_1517120_+|integrase	site-specific integrase	integrase	Q8SDS6	Staphylococcus_virus	100.0	5.9e-223
WP_001804554.1|1517162_1519190_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.2	3.4e-114
1517207:1517231	attR	TAAACATATCGTCATAATGTGATGG	NA	NA	NA	NA
WP_001548912.1|1519182_1520112_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1520356_1522108_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_000064078.1|1522088_1522814_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 5
NZ_LS483365	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome 1	2830002	1577938	1586250	2830002	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1577938_1578724_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1578849_1579740_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1579749_1581096_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1581209_1582310_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1582312_1582990_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1583120_1584227_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1584450_1586250_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 6
NZ_LS483365	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome 1	2830002	1655388	1664431	2830002	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1655388_1655907_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1655928_1658202_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1658404_1660684_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1660958_1661219_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1661237_1662377_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1662399_1663425_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1663426_1664431_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_LS483365	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome 1	2830002	1790204	1871692	2830002	tRNA,transposase,protease	Staphylococcus_phage(93.44%)	77	NA	NA
WP_001050546.1|1790204_1796765_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	3.4e-304
WP_000836465.1|1797107_1797419_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1797440_1799858_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1800145_1801327_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1801436_1802390_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1802386_1802950_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1803069_1803471_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1805049_1805877_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1805879_1805999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1806110_1807112_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1807233_1807698_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1807710_1808892_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1808902_1809535_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1809541_1810585_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261681.1|1811065_1812568_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1813090_1813405_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989123.1|1813404_1814697_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.9e-227
WP_000163235.1|1814714_1815110_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1815404_1816259_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1816534_1816759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671063.1|1816957_1817428_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	3.3e-81
WP_001153742.1|1817540_1817984_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1817970_1818414_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1818709_1819345_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1819784_1820498_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1820757_1821060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1821315_1821681_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1821677_1822031_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1824114_1824948_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1825159_1826068_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1826192_1827386_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1827756_1829349_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093392.1|1829484_1829970_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1830344_1831091_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1831095_1831569_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1831634_1831892_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1831888_1832890_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1832894_1834373_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1834531_1834987_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1835289_1835940_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1836020_1837016_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1837091_1837718_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1837758_1838103_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1838200_1838752_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1838969_1839611_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1839724_1839910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1839911_1840088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070812.1|1840098_1840482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1841085_1841229_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1841431_1841527_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1841649_1841751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1842098_1842476_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1842995_1847108_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072624.1|1847957_1849157_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	100.0	8.5e-230
WP_000028669.1|1849149_1850706_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1850869_1851004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1851068_1851788_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1851938_1852655_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1852756_1852864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1852812_1853532_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1853652_1854372_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1854429_1855152_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1855276_1855984_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1856947_1857514_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1857987_1858686_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1858682_1859444_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1859440_1860133_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1860155_1861529_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1861538_1862057_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1862072_1863317_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1863309_1866303_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1866367_1866511_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1867247_1867391_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1867632_1868616_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000878802.1|1868617_1869538_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	2.3e-174
WP_001790220.1|1870351_1870891_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1870903_1871692_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 8
NZ_LS483365	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome 1	2830002	1900214	1975553	2830002	tRNA,plate,capsid,terminase,head,transposase,holin,integrase,portal,tail	Staphylococcus_phage(85.92%)	93	1927158:1927172	1975895:1975909
WP_000181398.1|1900214_1900685_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_000379978.1|1900689_1901817_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000590809.1|1901967_1902690_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000649907.1|1902682_1904140_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063582.1|1904397_1905459_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_001550301.1|1905951_1907154_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_000110011.1|1915847_1916294_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869455.1|1916390_1917341_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000939521.1|1917346_1917802_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_001011598.1|1917882_1919172_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1919464_1920559_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001791878.1|1920648_1920741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000597238.1|1920749_1922486_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251253.1|1922776_1923319_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284752.1|1923620_1924658_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379098.1|1924809_1925787_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886468.1|1926047_1926884_-	membrane protein	NA	NA	NA	NA	NA
WP_000535834.1|1926892_1928410_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
1927158:1927172	attL	CTATTAAAGTATGCA	NA	NA	NA	NA
WP_000435806.1|1928424_1928739_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124419.1|1928716_1929535_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1929795_1930605_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163283.1|1930945_1931461_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1931591_1931753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011447034.1|1932079_1932181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001286805.1|1932506_1932692_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000139423.1|1932693_1932804_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1932874_1933027_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001148145.1|1933270_1934716_-	SH3 domain-containing protein	NA	Q8SDS7	Staphylococcus_phage	100.0	2.8e-296
WP_000354131.1|1934696_1935134_-|holin	phage holin	holin	Q8SDS8	Staphylococcus_phage	100.0	5.3e-73
WP_000398860.1|1935189_1935585_-	hypothetical protein	NA	Q8SDS9	Staphylococcus_phage	100.0	1.6e-68
WP_000276645.1|1935590_1936763_-|plate	BppU family phage baseplate upper protein	plate	Q8SDT0	Staphylococcus_phage	100.0	2.9e-198
WP_000524007.1|1936775_1938674_-	glucosaminidase domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	100.0	0.0e+00
WP_000466778.1|1938810_1939110_-	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_000782200.1|1939149_1939323_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000705896.1|1939326_1939704_-	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000259634.1|1939703_1941527_-|plate	phage baseplate upper protein	plate	B1H3M3	Staphylococcus_phage	100.0	0.0e+00
WP_000066419.1|1941526_1943437_-	minor structural protein	NA	Q8SDT4	Staphylococcus_phage	100.0	0.0e+00
WP_000156406.1|1943451_1945353_-|tail	phage tail protein	tail	Q8SDT5	Staphylococcus_phage	100.0	0.0e+00
WP_000350680.1|1945361_1946309_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
WP_000141488.1|1946321_1949789_-	hypothetical protein	NA	Q4ZDU6	Staphylococcus_virus	99.5	2.8e-281
WP_000105584.1|1949805_1950150_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100163.1|1950179_1950545_-	hypothetical protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000002583.1|1950606_1951188_-|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	100.0	4.9e-106
WP_000188653.1|1951206_1951590_-	hypothetical protein	NA	Q8SDU1	Staphylococcus_phage	100.0	2.6e-68
WP_001017815.1|1951601_1951949_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_001268312.1|1951948_1952251_-	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_000208960.1|1952247_1952580_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001114091.1|1952588_1952876_-	hypothetical protein	NA	Q8SDU4	Staphylococcus_phage	100.0	6.2e-46
WP_000438502.1|1952897_1953872_-|capsid	phage major capsid protein	capsid	Q8SDU5	Staphylococcus_phage	100.0	1.3e-183
WP_000392140.1|1953885_1954506_-	DUF4355 domain-containing protein	NA	Q8SDU6	Staphylococcus_phage	100.0	6.4e-64
WP_000072206.1|1954614_1954785_-	hypothetical protein	NA	Q4ZDV7	Staphylococcus_virus	100.0	3.3e-23
WP_001555735.1|1954857_1955853_-|capsid	minor capsid protein	capsid	Q4ZDV8	Staphylococcus_virus	100.0	5.8e-184
WP_000921894.1|1955859_1957395_-|portal	phage portal protein	portal	Q8SDU8	Staphylococcus_phage	100.0	3.1e-293
WP_000169944.1|1957405_1958683_-|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	100.0	3.0e-249
WP_001003272.1|1958669_1959110_-|terminase	terminase small subunit	terminase	Q8SDV0	Staphylococcus_phage	100.0	2.8e-74
WP_000162699.1|1959296_1959719_-	RinA family phage transcriptional activator	NA	Q8SDV1	Staphylococcus_phage	100.0	1.6e-74
WP_000989998.1|1959742_1959889_-	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
WP_000237865.1|1959889_1960063_-	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	96.5	1.4e-21
WP_001125018.1|1960065_1960266_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	98.5	4.0e-28
WP_000195782.1|1960240_1960429_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_000120375.1|1960425_1960671_-	hypothetical protein	NA	Q9B0F1	Staphylococcus_virus	86.4	2.1e-26
WP_000185657.1|1960707_1961217_-	dUTP pyrophosphatase	NA	Q8SDV3	Staphylococcus_phage	100.0	3.3e-90
WP_000066808.1|1961209_1961452_-	hypothetical protein	NA	Q8SDV4	Staphylococcus_phage	100.0	1.6e-34
WP_001065116.1|1961448_1961694_-	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	100.0	1.5e-37
WP_001126836.1|1961708_1961957_-	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	100.0	3.2e-43
WP_000029373.1|1961957_1962317_-	hypothetical protein	NA	Q8SDV7	Staphylococcus_phage	100.0	3.5e-62
WP_000772915.1|1962317_1962587_-	helix-turn-helix transcriptional regulator	NA	Q8SDV8	Staphylococcus_phage	100.0	1.2e-43
WP_001187263.1|1962587_1962773_-	DUF3113 family protein	NA	Q8SDV9	Staphylococcus_phage	100.0	2.4e-27
WP_000049798.1|1962777_1963182_-	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_001123688.1|1963192_1963414_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_001024405.1|1963417_1963633_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
WP_001106170.1|1963629_1964871_-	AAA family ATPase	NA	Q8SDW1	Staphylococcus_phage	100.0	5.7e-229
WP_001132247.1|1964867_1965224_-	hypothetical protein	NA	B7T0A8	Staphylococcus_virus	97.5	2.2e-61
WP_000504973.1|1965223_1966030_-	phage replisome organizer N-terminal domain-containing protein	NA	Q8SDW2	Staphylococcus_phage	100.0	2.1e-107
WP_001199446.1|1966001_1966694_-	hypothetical protein	NA	Q8SDW3	Staphylococcus_phage	100.0	6.1e-132
WP_000704713.1|1966706_1967261_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	1.0e-100
WP_000137071.1|1967290_1968070_-	ATP-binding protein	NA	Q8SDW5	Staphylococcus_phage	100.0	2.5e-142
WP_000999048.1|1968070_1968607_-	host-nuclease inhibitor Gam family protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
WP_001804558.1|1968619_1968880_-	DUF1108 family protein	NA	Q8SDW6	Staphylococcus_phage	100.0	7.6e-43
WP_000138304.1|1968860_1969190_-	hypothetical protein	NA	D2JGJ7	Staphylococcus_phage	100.0	1.4e-33
WP_000066020.1|1969279_1969441_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_000977381.1|1969433_1969655_-	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_000993183.1|1969668_1970118_-	hypothetical protein	NA	A0A0H3U2S4	Staphylococcus_phage	100.0	2.3e-79
WP_000187184.1|1970159_1970384_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001148569.1|1970384_1971176_-	phage antirepressor KilAC domain-containing protein	NA	Q8SDX0	Staphylococcus_phage	100.0	1.5e-145
WP_001153965.1|1971332_1971641_-	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
WP_001198673.1|1971655_1971874_-	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_000358220.1|1972015_1972735_+	helix-turn-helix transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	100.0	9.8e-133
WP_000705238.1|1972804_1972972_+	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000446801.1|1973131_1973317_+	hypothetical protein	NA	Q8SDX3	Staphylococcus_phage	100.0	6.6e-25
WP_000391592.1|1973352_1974258_+	hypothetical protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.4e-168
WP_000143212.1|1974194_1974395_-	excisionase	NA	Q38044	Staphylococcus_phage	100.0	5.6e-30
WP_001145718.1|1974506_1975553_+|integrase	site-specific integrase	integrase	Q38045	Staphylococcus_phage	100.0	4.2e-201
1975895:1975909	attR	CTATTAAAGTATGCA	NA	NA	NA	NA
>prophage 9
NZ_LS483365	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome 1	2830002	2010962	2098278	2830002	capsid,protease,terminase,head,holin,integrase,portal,tail	Staphylococcus_phage(91.25%)	113	2074740:2074756	2100934:2100950
WP_000827748.1|2010962_2012129_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2012159_2012486_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2012777_2012951_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2012931_2013534_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2013804_2014626_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2014618_2016088_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2016271_2017348_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2017367_2018162_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2018233_2018341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2018351_2019914_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2020118_2021216_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2021587_2022148_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2022200_2023130_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2023324_2023498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2023549_2024929_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2025048_2026077_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2026346_2026748_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2027320_2027494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2027944_2028985_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2029041_2029884_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2029880_2030438_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2030497_2031022_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2031142_2031706_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2031771_2032512_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2032511_2033384_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2033380_2034061_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2034061_2034958_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2034954_2035335_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2035593_2035770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2036012_2036111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2036310_2037597_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|2038221_2039976_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2040933_2041113_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2041423_2041684_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|2041736_2042087_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727643.1|2042769_2043219_+	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000920037.1|2044298_2044790_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	100.0	3.6e-86
WP_000861038.1|2044980_2045736_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2045747_2046002_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2046053_2046161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2046213_2046390_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2046539_2046836_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2046893_2047181_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2047227_2047380_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582137.1|2047369_2051155_-	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	100.0	0.0e+00
WP_001154327.1|2051170_2052661_-|tail	phage tail family protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
WP_001133528.1|2052660_2057313_-|tail	phage tail tape measure protein	tail	Q8SDK4	Staphylococcus_phage	100.0	0.0e+00
WP_000570353.1|2057368_2057491_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_000442601.1|2057550_2057997_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570652.1|2058061_2059015_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611452.1|2059015_2059396_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000501244.1|2059392_2059770_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|2059769_2060105_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177487.1|2060091_2060424_-|head,tail	phage head-tail connector protein	head,tail	Q8SDK7	Staphylococcus_phage	100.0	3.7e-58
WP_001252099.1|2060432_2060591_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849951.1|2060626_2061874_-|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	100.0	2.8e-215
WP_000032525.1|2061961_2062546_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000511067.1|2062538_2063789_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	4.4e-237
WP_000365300.1|2063794_2063995_-	hypothetical protein	NA	D2JLE5	Staphylococcus_phage	100.0	1.0e-26
WP_000133304.1|2064008_2065703_-|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|2065705_2066173_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|2066302_2066647_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406195.1|2066662_2067115_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	Q8SDL2	Staphylococcus_phage	100.0	3.6e-80
WP_000282748.1|2067229_2067700_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.7e-72
WP_001794311.1|2067722_2067923_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2067922_2068072_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195759.1|2068068_2068275_-	DUF1381 domain-containing protein	NA	A0A1W6JPY0	Staphylococcus_phage	100.0	1.9e-20
WP_001209216.1|2068291_2068465_-	hypothetical protein	NA	A0A1W6JQ45	Staphylococcus_phage	100.0	4.7e-25
WP_001066448.1|2068501_2069038_-	dUTP diphosphatase	NA	A0A1W6JQ21	Staphylococcus_phage	100.0	9.4e-96
WP_000714407.1|2069030_2069201_-	hypothetical protein	NA	A0A1W6JQ22	Staphylococcus_phage	100.0	5.7e-23
WP_001065078.1|2069187_2069442_-	DUF1024 family protein	NA	A0A1W6JQ06	Staphylococcus_phage	100.0	1.9e-38
WP_000219085.1|2069434_2069824_-	acetyltransferase	NA	A0A1W6JPV7	Staphylococcus_phage	100.0	3.5e-68
WP_000982695.1|2069820_2070168_-	hypothetical protein	NA	A0A1W6JPZ1	Staphylococcus_phage	100.0	5.9e-59
WP_001126839.1|2070231_2070480_-	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
WP_001029545.1|2070480_2070852_-	hypothetical protein	NA	A0A1W6JPY5	Staphylococcus_phage	100.0	7.5e-52
WP_001187234.1|2070852_2071038_-	DUF3113 family protein	NA	A0A1W6JPY2	Staphylococcus_phage	100.0	8.3e-28
WP_000049810.1|2071042_2071447_-	DUF1064 domain-containing protein	NA	A0A0H4ISQ5	Staphylococcus_phage	100.0	9.0e-67
WP_001123685.1|2071457_2071679_-	DUF3269 family protein	NA	A0A0N9BAW8	Staphylococcus_phage	100.0	9.9e-36
WP_000256590.1|2071691_2071850_-	hypothetical protein	NA	A1KX06	Staphylococcus_virus	100.0	4.5e-22
WP_000803062.1|2071843_2072623_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000190253.1|2072632_2073403_-	conserved phage C-terminal domain-containing protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
WP_000414755.1|2073468_2073750_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001081076.1|2073742_2073892_-	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_001199416.1|2073888_2074560_-	hypothetical protein	NA	Q8SDM2	Staphylococcus_phage	100.0	4.4e-127
WP_000704705.1|2074572_2075124_-	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
2074740:2074756	attL	GTTTAATAAATGAAAAA	NA	NA	NA	NA
WP_000137070.1|2075154_2075934_-	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	100.0	3.3e-142
WP_000815404.1|2075926_2076148_-	DUF2483 domain-containing protein	NA	A0A1W6JQ25	Staphylococcus_phage	100.0	9.3e-34
WP_000291488.1|2076157_2076418_-	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_000066020.1|2076510_2076672_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120197.1|2076668_2076989_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2077047_2077680_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2077694_2077835_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148855.1|2077865_2078063_-	hypothetical protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
WP_000351241.1|2078884_2079424_+	hypothetical protein	NA	Q8SDN0	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|2079447_2079708_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000338186.1|2079725_2079950_-	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
WP_001208482.1|2080108_2080879_+	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
WP_001013104.1|2081295_2081442_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|2081438_2082053_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000857176.1|2082160_2083198_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000595324.1|2084316_2085333_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
WP_000791407.1|2085354_2086410_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206638.1|2086844_2088068_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812008.1|2088439_2089285_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2089346_2090258_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2090418_2091726_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2092578_2093022_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011447041.1|2093127_2093565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2093882_2094473_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_000128898.1|2094469_2094682_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_000240645.1|2095383_2097000_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2097075_2097360_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2097534_2098278_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
2100934:2100950	attR	TTTTTCATTTATTAAAC	NA	NA	NA	NA
