assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474965.1_41825_D01	NZ_LS483345	Streptococcus pyogenes strain NCTC8231 chromosome 1	1	572764-573131	1,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type I-U, Type I-U?,Type I-C	AGTCTCACCCTTCATGGGTGAGTGGATTGAAAT,GTCTCACCCTTCATGGGTGAGTGGATTGAAAT,GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	33,32,32	0	0	NA	NA	I-C:I-C:I-C	5,5,5	5	TypeI-U,TypeI-U?,TypeI-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA,NA	NA|132aa|up_9|NZ_LS483345.1_560233_560629_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|188aa|up_8|NZ_LS483345.1_561229_561793_+	pfam13238, AAA_18, AAA domain	NA|883aa|up_7|NZ_LS483345.1_561794_564443_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|NZ_LS483345.1_564596_567005_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|NZ_LS483345.1_567137_567866_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|NZ_LS483345.1_567865_569761_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|NZ_LS483345.1_569765_570614_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|NZ_LS483345.1_570615_571290_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_LS483345.1_571286_572312_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_LS483345.1_572322_572616_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|NZ_LS483345.1_573290_574001_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|NZ_LS483345.1_574013_574637_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|NZ_LS483345.1_574679_575786_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|NZ_LS483345.1_575873_576614_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|NZ_LS483345.1_576610_578344_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|NZ_LS483345.1_578416_579496_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|NZ_LS483345.1_579509_580226_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|NZ_LS483345.1_580392_580866_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|NZ_LS483345.1_581007_581688_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|NZ_LS483345.1_581961_583197_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCF_900474965.1_41825_D01	NZ_LS483345	Streptococcus pyogenes strain NCTC8231 chromosome 1	2	758857-758957	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|262aa|up_6|NZ_LS483345.1_750240_751026_-,NA	NA|755aa|up_9|NZ_LS483345.1_745617_747882_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|207aa|up_8|NZ_LS483345.1_748138_748759_-	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|205aa|up_7|NZ_LS483345.1_749499_750114_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|NZ_LS483345.1_750240_751026_-	NA	NA|233aa|up_5|NZ_LS483345.1_751035_751734_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|NZ_LS483345.1_751733_752105_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|NZ_LS483345.1_752289_755400_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|NZ_LS483345.1_755479_756493_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|NZ_LS483345.1_756555_758058_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|NZ_LS483345.1_758275_758833_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|NZ_LS483345.1_759008_760823_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|NZ_LS483345.1_761018_761354_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|NZ_LS483345.1_761460_762102_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|NZ_LS483345.1_762111_762741_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|NZ_LS483345.1_762756_763593_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|NZ_LS483345.1_763963_764737_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|NZ_LS483345.1_765106_766342_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|NZ_LS483345.1_766461_767784_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|NZ_LS483345.1_768312_770631_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|NZ_LS483345.1_770992_771241_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_900474965.1_41825_D01	NZ_LS483345	Streptococcus pyogenes strain NCTC8231 chromosome 1	3	958325-958492	2	PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-B,Type II-C,Type II-A	GTTTTGGGACCATTCAAAACAACATAGCTCTAAAACC	37	0	0	NA	NA	II-A,II-B	2	2	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA,NA|214aa|down_8|NZ_LS483345.1_968385_969027_-	NA|550aa|up_9|NZ_LS483345.1_946659_948309_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_8|NZ_LS483345.1_948444_949272_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_7|NZ_LS483345.1_949268_950078_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_6|NZ_LS483345.1_950094_950586_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_5|NZ_LS483345.1_950604_951030_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_4|NZ_LS483345.1_951236_952256_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_3|NZ_LS483345.1_952385_952823_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|419aa|up_2|NZ_LS483345.1_953008_954265_-	PHA03169, PHA03169, hypothetical protein; Provisional	NA|611aa|up_1|NZ_LS483345.1_954452_956285_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|378aa|up_0|NZ_LS483345.1_956453_957587_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	csn2|221aa|down_0|NZ_LS483345.1_958593_959256_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_LS483345.1_959245_959587_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_LS483345.1_959583_960453_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1368aa|down_3|NZ_LS483345.1_960452_964556_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|NZ_LS483345.1_965034_965667_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NZ_LS483345.1_965666_966431_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NZ_LS483345.1_966430_967183_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NZ_LS483345.1_967192_968323_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|NZ_LS483345.1_968385_969027_-	NA	NA|452aa|down_9|NZ_LS483345.1_969150_970506_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
