The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483333	Streptococcus pyogenes strain NCTC12048 chromosome 1	1793034	36643	48956	1793034		Synechococcus_phage(28.57%)	8	NA	NA
WP_111713545.1|36643_40369_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	6.0e-40
WP_111713546.1|40529_41984_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.9	9.8e-55
WP_111713547.1|42011_43034_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	41.1	4.0e-63
WP_002986700.1|43201_43756_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
WP_111713548.1|43939_45487_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	51.8	9.8e-45
WP_014407193.1|45544_46669_-	SH3 domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
WP_111713549.1|46921_48187_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_041174354.1|48464_48956_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
NZ_LS483333	Streptococcus pyogenes strain NCTC12048 chromosome 1	1793034	89947	104561	1793034	holin,tRNA,integrase	Streptococcus_phage(84.62%)	22	83207:83221	99429:99443
83207:83221	attL	TTTATCAAAAACACA	NA	NA	NA	NA
WP_111713553.1|89947_91093_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	48.7	1.1e-96
WP_011185066.1|91420_91564_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_111681403.1|92238_92805_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	74.6	5.5e-22
WP_111681404.1|93040_93238_+	helix-turn-helix transcriptional regulator	NA	A0A1X9I5U5	Streptococcus_phage	78.5	5.2e-20
WP_111713554.1|93874_94282_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	68.7	1.1e-48
WP_022555253.1|94294_94924_+	Rha family transcriptional regulator	NA	R9QNB1	Lactococcus_phage	43.0	9.5e-31
WP_111713555.1|95154_95337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111713556.1|95348_95681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014612652.1|95677_95818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111713557.1|95798_95996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003058810.1|96006_96336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001100459.1|96338_96611_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
WP_111713558.1|96611_97469_+	primase C-terminal domain-containing protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	9.0e-125
WP_063661998.1|97437_99126_+	DNA primase	NA	A0A1X9I717	Streptococcus_phage	81.8	6.1e-258
WP_000694577.1|99412_99586_+	hypothetical protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
99429:99443	attR	TTTATCAAAAACACA	NA	NA	NA	NA
WP_014635784.1|99591_99765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014407945.1|99766_100276_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
WP_014407946.1|100349_100838_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.3	2.0e-44
WP_020905578.1|101241_101604_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
WP_111713559.1|101578_101962_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	41.7	9.9e-15
WP_111713560.1|102170_103037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111713561.1|103301_104561_-|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	40.7	9.0e-73
>prophage 3
NZ_LS483333	Streptococcus pyogenes strain NCTC12048 chromosome 1	1793034	516498	580238	1793034	holin,tRNA,integrase,terminase,capsid,portal,tail	Streptococcus_pyogenes_phage(44.44%)	75	513438:513453	585099:585114
513438:513453	attL	CAGATAGTCAAGAAGT	NA	NA	NA	NA
WP_111713661.1|516498_517434_+|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	38.5	6.0e-05
WP_111713662.1|517423_518746_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_002983660.1|518783_519524_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_111713663.1|519520_521419_+	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	B5LWE2	Feldmannia_species_virus	30.7	1.4e-21
WP_011054833.1|521540_522233_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_002991890.1|522229_523234_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_002991888.1|523226_523868_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023079249.1|523904_525305_+	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	43.5	5.4e-26
WP_023610575.1|525304_525682_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011888673.1|525699_526641_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	77.2	1.7e-129
WP_009880468.1|526768_527401_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	54.3	3.2e-63
WP_111713664.1|527456_528782_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	51.1	2.4e-116
WP_111713665.1|528753_529419_+	ComF family protein	NA	NA	NA	NA	NA
WP_002988974.1|529498_530047_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_002983693.1|537765_538299_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_053308258.1|538378_539155_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_011018152.1|539302_540469_-|integrase	tyrosine-type recombinase/integrase	integrase	C5J953	Streptococcus_phage	42.4	2.4e-80
WP_111713667.1|540641_541328_-	hypothetical protein	NA	A0A1P8VVT3	Streptococcus_phage	99.6	1.7e-121
WP_111713668.1|541357_541651_-	hypothetical protein	NA	A0A1P8VVQ0	Streptococcus_phage	96.0	5.0e-19
WP_011054824.1|541661_542039_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1P8VVK5	Streptococcus_phage	100.0	4.0e-69
WP_111713669.1|542022_542382_-	helix-turn-helix transcriptional regulator	NA	A0A1P8VVN3	Streptococcus_phage	97.5	5.2e-58
WP_009881062.1|542570_542789_+	helix-turn-helix transcriptional regulator	NA	A0A1P8VVR5	Streptococcus_phage	100.0	4.1e-34
WP_111713670.1|542883_543135_+	hypothetical protein	NA	A0A1P8VVV6	Streptococcus_phage	98.8	1.1e-41
WP_043885080.1|543315_543630_+	helix-turn-helix transcriptional regulator	NA	A0A1P8VVN6	Streptococcus_phage	94.2	5.9e-50
WP_111713671.1|543643_544600_+	phage replisome organizer N-terminal domain-containing protein	NA	J7KBV5	Streptococcus_phage	83.1	7.2e-115
WP_011018146.1|544609_545452_+	ATP-binding protein	NA	A0A1S5S7L9	Streptococcus_phage	40.7	1.3e-48
WP_011285580.1|545451_545589_+	hypothetical protein	NA	J7KBQ4	Streptococcus_phage	78.4	2.7e-07
WP_011285579.1|545601_545955_+	hypothetical protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	54.0	2.8e-16
WP_011018143.1|545935_546190_+	hypothetical protein	NA	Q938N0	Temperate_phage	98.8	3.7e-42
WP_111713672.1|546211_546694_+	siphovirus Gp157 family protein	NA	Q938M9	Temperate_phage	91.9	5.3e-50
WP_111713673.1|546694_547369_+	ERF family protein	NA	A0A097PBE8	Streptococcus_pyogenes_phage	99.6	9.0e-120
WP_111713674.1|547361_547787_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	85.1	2.8e-58
WP_063812419.1|547799_548006_+	hypothetical protein	NA	Q938M6	Temperate_phage	82.3	1.1e-23
WP_111713675.1|548005_548446_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	95.9	1.1e-78
WP_011284873.1|548442_548799_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
WP_111713676.1|549053_549323_+	DUF3310 domain-containing protein	NA	A0A1P8VVP5	Streptococcus_phage	98.8	6.4e-45
WP_111713677.1|549653_550055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054572.1|550054_550690_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.9	2.2e-88
WP_011054571.1|550962_551403_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	98.6	2.1e-77
WP_172449893.1|551848_552106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111713678.1|552185_552704_+	ParB N-terminal domain-containing protein	NA	Q938L7	Temperate_phage	97.7	9.1e-88
WP_145959515.1|553481_553751_+	hypothetical protein	NA	B5SP24	Lactococcus_phage	51.1	2.1e-16
WP_111713680.1|554685_555909_+|terminase	PBSX family phage terminase large subunit	terminase	M1PG09	Streptococcus_phage	64.4	1.5e-152
WP_111713681.1|555908_557234_+|portal	phage portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	95.8	1.6e-234
WP_111713682.1|557202_558111_+|capsid	minor capsid protein	capsid	A0A097PBF2	Streptococcus_pyogenes_phage	94.5	2.4e-83
WP_111713683.1|558117_558351_+	hypothetical protein	NA	Q938K9	Temperate_phage	62.5	4.0e-19
WP_111713684.1|558458_559028_+	DUF4355 domain-containing protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	84.7	2.9e-55
WP_111713685.1|559046_559937_+|capsid	phage capsid protein	capsid	A0A097PAW2	Streptococcus_pyogenes_phage	98.2	2.1e-84
WP_111713686.1|559949_560243_+	Rho termination factor N-terminal domain-containing protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	93.8	1.7e-43
WP_111713687.1|560256_560601_+	hypothetical protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	98.2	3.7e-53
WP_009880258.1|560597_560909_+	hypothetical protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	99.0	2.6e-50
WP_048327815.1|560905_561301_+	antigen C	NA	A0A097PAT9	Streptococcus_pyogenes_phage	94.7	4.8e-57
WP_111713688.1|561302_561713_+	DUF5072 family protein	NA	A0A097PAW5	Streptococcus_pyogenes_phage	99.3	5.2e-70
WP_111713689.1|561724_562231_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	98.7	6.4e-78
WP_011528563.1|562243_562561_+	hypothetical protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	98.1	1.9e-51
WP_111713690.1|562533_562992_+	hypothetical protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	92.8	3.5e-75
WP_111713691.1|562984_564790_+|tail	phage tail protein	tail	A0A097PAU2	Streptococcus_pyogenes_phage	97.3	2.1e-256
WP_009880250.1|564790_566275_+|tail	phage tail family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	99.8	4.3e-292
WP_111713692.1|566275_569716_+|tail	phage tail protein	tail	A0A097PBF5	Streptococcus_pyogenes_phage	98.8	0.0e+00
WP_011528568.1|569720_571583_+	hypothetical protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.8	0.0e+00
WP_009880247.1|571593_571941_+	DUF1366 domain-containing protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
WP_015055952.1|572090_572414_+	hypothetical protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
WP_111713693.1|572413_572746_+|holin	phage holin	holin	A0A097PBF6	Streptococcus_pyogenes_phage	99.1	2.2e-50
WP_111713694.1|572747_573512_+	CHAP domain-containing protein	NA	A0A097PAT3	Streptococcus_pyogenes_phage	98.8	1.6e-149
WP_111713695.1|573523_574126_+	hypothetical protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	97.7	1.7e-90
WP_111713696.1|574136_574910_+	hypothetical protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	95.7	1.9e-129
WP_009880241.1|574919_575141_+	hypothetical protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
WP_111713697.1|575140_575800_+	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	97.3	3.3e-119
WP_111713698.1|575957_576488_+	DUF4065 domain-containing protein	NA	Q938J3	Temperate_phage	96.6	2.1e-95
WP_111713699.1|576469_577276_+	hypothetical protein	NA	Q938J2	Temperate_phage	56.5	3.1e-74
WP_111713700.1|577331_577517_-	helix-turn-helix domain-containing protein	NA	A3F670	Streptococcus_phage	93.2	4.4e-21
WP_111713701.1|577513_577993_-	hypothetical protein	NA	A3F671	Streptococcus_phage	97.5	1.7e-85
WP_111713702.1|578025_578334_-	hypothetical protein	NA	A3F672	Streptococcus_phage	84.3	1.4e-43
WP_111713703.1|578509_578692_+	Paratox	NA	A3F673	Streptococcus_phage	75.0	5.3e-19
WP_111713704.1|578882_580238_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	33.2	5.1e-74
585099:585114	attR	CAGATAGTCAAGAAGT	NA	NA	NA	NA
>prophage 4
NZ_LS483333	Streptococcus pyogenes strain NCTC12048 chromosome 1	1793034	1154598	1165201	1793034		Streptococcus_phage(57.14%)	9	NA	NA
WP_011184383.1|1154598_1155741_-	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
WP_111713838.1|1155975_1156416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002990257.1|1156445_1157714_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_041788936.1|1157801_1159154_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	4.5e-30
WP_023080164.1|1159374_1159716_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
WP_002990262.1|1159776_1160943_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
WP_002985140.1|1161036_1161723_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
WP_002985142.1|1161719_1162883_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
WP_030126017.1|1162990_1165201_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.9	1.1e-267
>prophage 5
NZ_LS483333	Streptococcus pyogenes strain NCTC12048 chromosome 1	1793034	1336009	1342659	1793034	portal	Streptococcus_phage(66.67%)	11	NA	NA
WP_010922009.1|1336009_1336834_-	asparagine ligase A	NA	M1PB22	Moumouvirus	33.1	6.2e-22
WP_030127194.1|1336857_1337196_-	Fic family protein	NA	NA	NA	NA	NA
WP_011285436.1|1337612_1337927_-	hypothetical protein	NA	Q6DMT0	Streptococcus_phage	64.5	4.9e-20
WP_010922006.1|1337992_1338445_-|portal	phage portal protein	portal	E4ZFM3	Streptococcus_phage	84.9	4.4e-62
WP_053308547.1|1338549_1338822_-	hypothetical protein	NA	E4ZFM1	Streptococcus_phage	46.9	4.5e-06
WP_011285435.1|1338840_1339146_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_172449919.1|1339145_1339448_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_111713885.1|1339502_1339790_-	hypothetical protein	NA	M1PSF2	Streptococcus_phage	89.5	1.7e-43
WP_111713886.1|1339694_1340588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001176803.1|1340587_1340812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009880291.1|1342449_1342659_+	helix-turn-helix transcriptional regulator	NA	A0A2K5B263	Erysipelothrix_phage	63.1	4.4e-17
>prophage 6
NZ_LS483333	Streptococcus pyogenes strain NCTC12048 chromosome 1	1793034	1451611	1457485	1793034		Streptococcus_phage(100.0%)	8	NA	NA
WP_111713921.1|1451611_1452439_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.1	1.9e-127
WP_011284536.1|1452512_1452869_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
WP_111713922.1|1453167_1453797_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_023609786.1|1453843_1454236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111713923.1|1454262_1455126_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	7.7e-116
WP_002985838.1|1455130_1455454_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
WP_010921931.1|1455956_1456832_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	43.8	7.7e-63
WP_109991822.1|1456849_1457485_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	62.9	2.7e-65
