assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474885.1_41851_E01	NZ_LS483336	Streptococcus pyogenes strain NCTC12046 chromosome 1	1	979621-979722	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_LS483336.1_987552_988338_+	NA|83aa|up_9|NZ_LS483336.1_967336_967585_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_LS483336.1_967947_970266_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_LS483336.1_970795_972118_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_LS483336.1_972237_973473_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_LS483336.1_973842_974616_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_LS483336.1_974985_975822_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_LS483336.1_975837_976467_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_LS483336.1_976476_977118_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_LS483336.1_977224_977560_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_LS483336.1_977755_979570_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_LS483336.1_979745_980303_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_LS483336.1_980520_982023_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_LS483336.1_982085_983099_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_LS483336.1_983178_986289_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_LS483336.1_986473_986845_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_LS483336.1_986844_987543_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_LS483336.1_987552_988338_+	NA	NA|205aa|down_7|NZ_LS483336.1_988464_989079_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NZ_LS483336.1_989819_990440_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_LS483336.1_990696_992961_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_900474885.1_41851_E01	NZ_LS483336	Streptococcus pyogenes strain NCTC12046 chromosome 1	2	1251124-1251488	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGG,ATTTCAATCCACTCACCCATGAAGGGTGAGAC	32,26,32	2	2	1251156-1251189|1251157-1251190	NZ_LS483336.1_1587499-1587532|NZ_LS483336.1_1587499-1587532	I-C:I-C:I-C	5,5,5	5	TypeI-U?,TypeI-U,TypeI-C	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|143aa|up_9|NZ_LS483336.1_1240534_1240963_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|412aa|up_8|NZ_LS483336.1_1241062_1242298_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_7|NZ_LS483336.1_1242571_1243252_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_6|NZ_LS483336.1_1243393_1243867_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_5|NZ_LS483336.1_1244032_1244749_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|578aa|up_4|NZ_LS483336.1_1245910_1247644_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_LS483336.1_1247640_1248381_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NZ_LS483336.1_1248468_1249575_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_LS483336.1_1249617_1250241_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_LS483336.1_1250253_1250964_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_LS483336.1_1251636_1251930_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_LS483336.1_1251940_1252966_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_LS483336.1_1252962_1253637_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_LS483336.1_1253638_1254487_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NZ_LS483336.1_1254491_1256387_-	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|243aa|down_5|NZ_LS483336.1_1256386_1257115_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NZ_LS483336.1_1257247_1259656_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NZ_LS483336.1_1259809_1262458_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NZ_LS483336.1_1262459_1263023_-	pfam13238, AAA_18, AAA domain	NA|132aa|down_9|NZ_LS483336.1_1263624_1264020_-	PRK07758, PRK07758, hypothetical protein; Provisional
GCF_900474885.1_41851_E01	NZ_LS483336	Streptococcus pyogenes strain NCTC12046 chromosome 1	3	1699788-1699945	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	CGAGACGCTTCAAGGTCACGGCTTAGGCTCTTACGGCTTGCGTCTGAGATTTG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|84aa|down_2|NZ_LS483336.1_1704376_1704628_-,NA|95aa|down_9|NZ_LS483336.1_1712150_1712435_-	NA|326aa|up_9|NZ_LS483336.1_1685516_1686494_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|up_8|NZ_LS483336.1_1686490_1687312_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|268aa|up_7|NZ_LS483336.1_1687323_1688127_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|209aa|up_6|NZ_LS483336.1_1688110_1688737_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|67aa|up_5|NZ_LS483336.1_1688817_1689018_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|824aa|up_4|NZ_LS483336.1_1689186_1691658_-	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|307aa|up_3|NZ_LS483336.1_1691670_1692591_-	cd01017, AdcA, Metal binding protein AdcA	NA|423aa|up_2|NZ_LS483336.1_1692826_1694095_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|1183aa|up_1|NZ_LS483336.1_1694191_1697740_-	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|373aa|up_0|NZ_LS483336.1_1698074_1699193_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|416aa|down_0|NZ_LS483336.1_1700666_1701914_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|522aa|down_1|NZ_LS483336.1_1702135_1703701_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|84aa|down_2|NZ_LS483336.1_1704376_1704628_-	NA	NA|543aa|down_3|NZ_LS483336.1_1704705_1706334_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|463aa|down_4|NZ_LS483336.1_1706435_1707824_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|down_5|NZ_LS483336.1_1707820_1708474_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_6|NZ_LS483336.1_1708567_1709785_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|225aa|down_7|NZ_LS483336.1_1709797_1710472_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|423aa|down_8|NZ_LS483336.1_1710458_1711727_-	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]	NA|95aa|down_9|NZ_LS483336.1_1712150_1712435_-	NA
