assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474775.1_41800_G02	NZ_LS483322	Streptococcus pyogenes strain NCTC12066 chromosome 1	1	780820-780920	1	CRISPRCasFinder	no		cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	NA|262aa|up_6|NZ_LS483322.1_772203_772989_-,NA	NA|261aa|up_9|NZ_LS483322.1_769784_770567_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|63aa|up_8|NZ_LS483322.1_770679_770868_+	cd06603, GH31_GANC_GANAB_alpha, neutral alpha-glucosidase C, neutral alpha-glucosidase AB	NA|205aa|up_7|NZ_LS483322.1_771458_772073_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|NZ_LS483322.1_772203_772989_-	NA	NA|233aa|up_5|NZ_LS483322.1_772998_773697_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|NZ_LS483322.1_773696_774068_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|NZ_LS483322.1_774252_777363_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|NZ_LS483322.1_777442_778456_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|NZ_LS483322.1_778518_780021_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|NZ_LS483322.1_780238_780796_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|NZ_LS483322.1_780971_782786_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|NZ_LS483322.1_782981_783317_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|NZ_LS483322.1_783423_784065_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|NZ_LS483322.1_784074_784704_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|NZ_LS483322.1_784719_785556_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|NZ_LS483322.1_785925_786699_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|NZ_LS483322.1_787068_788304_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|NZ_LS483322.1_788423_789746_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|NZ_LS483322.1_790274_792593_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|NZ_LS483322.1_792955_793204_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_900474775.1_41800_G02	NZ_LS483322	Streptococcus pyogenes strain NCTC12066 chromosome 1	2	959228-959527	2,1	CRISPRCasFinder,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	Type II-B,Type II-A,Type II-C	GTTTTGGGACCACTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAACATAACCTAAGCGTTGGA	36,53	0	0	NA	NA	II-A:II-A	4,2	4	TypeII-B,TypeII-A,TypeII-C	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	NA,NA|205aa|down_8|NZ_LS483322.1_969451_970066_-	NA|349aa|up_9|NZ_LS483322.1_946954_948001_-	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily	NA|263aa|up_8|NZ_LS483322.1_947994_948783_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|550aa|up_7|NZ_LS483322.1_948786_950436_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_6|NZ_LS483322.1_950571_951399_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_5|NZ_LS483322.1_951395_952205_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_4|NZ_LS483322.1_952221_952713_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_3|NZ_LS483322.1_952739_953165_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|146aa|up_2|NZ_LS483322.1_954330_954768_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|546aa|up_1|NZ_LS483322.1_954954_956592_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|611aa|up_0|NZ_LS483322.1_956751_958584_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	csn2|221aa|down_0|NZ_LS483322.1_959629_960292_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_LS483322.1_960281_960623_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_LS483322.1_960619_961489_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|NZ_LS483322.1_961488_965595_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|NZ_LS483322.1_966073_966706_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NZ_LS483322.1_966705_967470_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NZ_LS483322.1_967469_968222_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NZ_LS483322.1_968231_969362_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|205aa|down_8|NZ_LS483322.1_969451_970066_-	NA	NA|452aa|down_9|NZ_LS483322.1_970189_971545_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
