The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483324	Staphylococcus aureus strain NCTC10344 chromosome 1	2835275	12234	72038	2835275	transposase,bacteriocin,tRNA	Streptococcus_phage(25.0%)	49	NA	NA
WP_000884334.1|12234_13521_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000190726.1|14171_14867_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_000628051.1|14863_15193_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_000186490.1|15555_16524_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_001791710.1|16817_17756_+	YybS family protein	NA	NA	NA	NA	NA
WP_001081634.1|17770_19738_+	cyclic-di-AMP phosphodiesterase GdpP	NA	NA	NA	NA	NA
WP_000864305.1|19734_20181_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_000375647.1|20212_21613_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
WP_000095328.1|21890_23174_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000101976.1|24376_25078_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_111763584.1|25090_26917_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_001060140.1|26909_28244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001104177.1|28244_29033_+	two-component system regulatory protein YycI	NA	NA	NA	NA	NA
WP_000088649.1|29428_30229_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_000645751.1|30456_32775_+	LPXTG-anchored adenosine synthase AdsA	NA	NA	NA	NA	NA
WP_000704775.1|33142_33622_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_001802813.1|34137_34419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000377077.1|34888_35404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000790334.1|35598_36249_-	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_000193219.1|36330_37974_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
WP_000968575.1|38031_38370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001836597.1|38504_39185_-	cytochrome C biogenesis protein region	NA	NA	NA	NA	NA
WP_000746201.1|39181_39535_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_025175377.1|39551_39959_-	Hg(II)-responsive transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_000163428.1|40258_41605_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001105999.1|41887_42562_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
WP_001836609.1|42719_43244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001039249.1|44137_44326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000428914.1|44986_45418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001813124.1|46143_46311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001836610.1|46873_47692_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_047210382.1|48087_52281_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001791613.1|53978_54071_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001670418.1|54242_55214_-	oxidoreductase	NA	NA	NA	NA	NA
WP_000418034.1|55337_55757_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000690626.1|56042_56618_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	2.9e-42
WP_000069452.1|56884_58930_+	copper-translocating P-type ATPase CopB	NA	E4ZFI9	Streptococcus_phage	29.2	2.3e-65
WP_000277154.1|58944_60378_+	multi-copper oxidase Mco	NA	NA	NA	NA	NA
WP_047210381.1|60444_62091_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.2	1.3e-289
WP_000378396.1|62453_64634_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_000159128.1|64626_64992_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000361064.1|65229_65607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|65701_66376_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|66410_66623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000633163.1|66942_67278_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000120605.1|67338_67653_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_000358995.1|68960_69356_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000726502.1|69735_70029_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000713732.1|70103_72038_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
>prophage 2
NZ_LS483324	Staphylococcus aureus strain NCTC10344 chromosome 1	2835275	796180	804001	2835275		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|796180_797236_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|797235_797922_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|797896_798370_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093556.1|798712_799153_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|799432_800017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|800115_800829_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|800832_801252_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|801253_801922_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|802272_802866_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217794.1|802849_804001_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 3
NZ_LS483324	Staphylococcus aureus strain NCTC10344 chromosome 1	2835275	815972	830702	2835275		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663025.1|815972_817031_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
WP_000197275.1|817325_817868_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|818547_819465_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031797439.1|819554_819656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|819733_821239_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|821579_822080_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|822099_822966_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|823766_824165_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|824127_826233_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|826350_827322_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|827835_827991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|828029_829001_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|828987_829944_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|829940_830702_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 4
NZ_LS483324	Staphylococcus aureus strain NCTC10344 chromosome 1	2835275	1074385	1082858	2835275		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1074385_1074868_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010407.1|1074854_1075979_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1075982_1076687_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1076686_1076950_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1076951_1077623_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1077615_1079805_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1079783_1081268_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1081260_1082289_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1082291_1082858_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_LS483324	Staphylococcus aureus strain NCTC10344 chromosome 1	2835275	1339330	1355537	2835275	head,terminase,portal,integrase	Staphylococcus_phage(54.17%)	27	1333054:1333071	1359270:1359287
1333054:1333071	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_001836882.1|1339330_1340458_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
WP_001183750.1|1340510_1341206_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
WP_000554410.1|1341217_1341601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664917.1|1341747_1342140_-	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
WP_001209962.1|1342307_1342526_+	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
WP_000932238.1|1342552_1342828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000392387.1|1343092_1343263_+	hypothetical protein	NA	Q4ZDZ8	Staphylococcus_virus	89.3	2.4e-21
WP_000800341.1|1343251_1343458_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
WP_001157025.1|1343518_1344202_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
WP_000072840.1|1344300_1344462_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786993.1|1344548_1344866_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786634.1|1344855_1345122_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
WP_001004327.1|1345126_1345663_+	host-nuclease inhibitor Gam family protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
WP_000907597.1|1345663_1346443_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
WP_000702007.1|1346469_1347018_+	hypothetical protein	NA	A7TWM8	Staphylococcus_phage	92.9	1.1e-91
WP_000929466.1|1347030_1347933_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
WP_000946005.1|1347933_1348224_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
WP_000714410.1|1348238_1348403_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	88.9	1.1e-18
WP_000860979.1|1348402_1348714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185176.1|1348706_1349237_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	38.2	5.2e-22
WP_025174970.1|1349378_1349486_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	87.5	3.2e-08
WP_000835355.1|1349482_1349947_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
WP_000653930.1|1350223_1350712_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	4.3e-07
WP_000090969.1|1350864_1351293_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207537.1|1351279_1352554_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.9e-195
WP_000158568.1|1352566_1354015_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	7.4e-196
WP_001836893.1|1354004_1355537_+|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	61.6	1.9e-109
1359270:1359287	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 6
NZ_LS483324	Staphylococcus aureus strain NCTC10344 chromosome 1	2835275	1634014	1642344	2835275	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1634014_1634800_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1634925_1635816_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062187.1|1635825_1637172_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683929.1|1637285_1638386_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624583.1|1638388_1639066_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1639196_1640303_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217257.1|1640526_1642344_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
>prophage 7
NZ_LS483324	Staphylococcus aureus strain NCTC10344 chromosome 1	2835275	1710007	1719038	2835275	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_111763590.1|1710007_1710514_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	50.0	7.9e-28
WP_000594991.1|1710535_1712809_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	5.2e-63
WP_000749795.1|1713011_1715291_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1715565_1715826_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1715844_1716984_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1717006_1718032_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1718033_1719038_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_LS483324	Staphylococcus aureus strain NCTC10344 chromosome 1	2835275	1844395	1908552	2835275	protease,tRNA	Staphylococcus_phage(95.45%)	62	NA	NA
WP_001050538.1|1844395_1850956_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	99.0	1.6e-309
WP_000836465.1|1851281_1851593_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001808015.1|1851614_1854032_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_001025061.1|1854319_1855501_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1855610_1856564_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1856560_1857124_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1857243_1857645_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1858216_1859044_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1859046_1859166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1859277_1860279_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1860400_1860865_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1860877_1862059_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1862069_1862702_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001836682.1|1862708_1863752_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	1.6e-195
WP_001261668.1|1864232_1865735_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1866257_1866572_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989122.1|1866571_1867864_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	9.4e-227
WP_001032833.1|1867950_1868805_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1869080_1869305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001153742.1|1870085_1870529_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1870515_1870959_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168901.1|1871254_1871890_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1872329_1873043_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1873302_1873605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1873860_1874226_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623478.1|1874222_1874576_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453314.1|1874958_1875792_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000366163.1|1876003_1876912_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1877036_1878230_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1878601_1880194_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001834463.1|1880571_1881318_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672014.1|1881322_1881796_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1881861_1882119_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778525.1|1882115_1883117_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.2e-186
WP_000348374.1|1883121_1884600_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.4	8.1e-283
WP_072433592.1|1884758_1885214_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	5.7e-78
WP_076079519.1|1885516_1886167_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	86.1	2.0e-44
WP_000070655.1|1886247_1887243_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_000669027.1|1887318_1887945_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000627537.1|1887985_1888327_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414214.1|1888427_1889000_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000864143.1|1889196_1889754_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	2.7e-77
WP_000375476.1|1890126_1890303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100228309.1|1890313_1890502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000731418.1|1891853_1892297_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000745473.1|1892296_1892740_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_047210363.1|1893278_1895702_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001036003.1|1895825_1896203_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000759947.1|1896408_1896849_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001836790.1|1896893_1898507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095395.1|1898521_1898821_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_047210362.1|1898947_1900192_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	62.1	1.2e-125
WP_000028648.1|1900184_1901741_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	2.6e-287
WP_001791797.1|1901904_1902039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038690.1|1902103_1902823_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_001038757.1|1902973_1903690_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	2.4e-131
WP_011447030.1|1903791_1903899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038706.1|1903847_1904567_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
WP_001038872.1|1904687_1905407_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039444.1|1905464_1906187_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001039433.1|1906311_1907019_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	7.7e-130
WP_001092776.1|1907982_1908552_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
>prophage 9
NZ_LS483324	Staphylococcus aureus strain NCTC10344 chromosome 1	2835275	2002096	2112802	2835275	head,coat,portal,integrase,tRNA,tail,holin,capsid,terminase,protease	Staphylococcus_phage(89.36%)	135	1998589:1998613	2116006:2116030
1998589:1998613	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000170162.1|2002096_2002399_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|2002765_2004304_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|2004392_2005592_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2005604_2007608_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2007611_2009804_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272070.1|2009800_2010493_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2010665_2010968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2011076_2012372_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827750.1|2013231_2014398_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434934.1|2014428_2014755_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|2015046_2015220_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2015200_2015803_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_001836816.1|2016073_2016895_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.3	8.8e-69
WP_000284433.1|2016887_2018357_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_001836814.1|2018540_2019617_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2019636_2020431_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2020502_2020610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323164.1|2020620_2022183_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275706.1|2022387_2023485_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
WP_000149686.1|2023856_2024417_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001836818.1|2024469_2025399_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2025593_2025767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021216.1|2025818_2027198_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2027317_2028346_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2028615_2029017_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2029589_2029763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001836821.1|2030213_2031254_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713070.1|2031310_2032153_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2032149_2032707_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2032766_2033291_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2033411_2033975_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2034040_2034781_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2034780_2035653_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645725.1|2035649_2036330_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991303.1|2036330_2037227_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2037223_2037604_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2037862_2038039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2038281_2038380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068523.1|2038579_2039866_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_031864371.1|2040445_2042509_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2043466_2043646_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2043956_2044217_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|2044269_2044620_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000920041.1|2046116_2046608_-	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000861038.1|2046798_2047554_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2047565_2047820_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2047871_2047979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072353918.1|2048031_2048208_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	94.8	5.5e-21
WP_000340977.1|2048350_2048725_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262620.1|2048780_2049068_-	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_001000058.1|2049113_2049266_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_001836550.1|2049258_2053041_-	phage protein	NA	A0A1V0E5H3	Staphylococcus_phage	100.0	0.0e+00
WP_001154317.1|2053056_2054547_-|tail	phage tail family protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
WP_001836551.1|2054546_2059196_-|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	100.0	0.0e+00
WP_000570353.1|2059251_2059374_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_000442601.1|2059433_2059880_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570652.1|2059944_2060898_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611452.1|2060898_2061279_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000501244.1|2061275_2061653_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|2061652_2061988_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177483.1|2061974_2062307_-|head,tail	phage head-tail connector protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_001252099.1|2062315_2062474_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849950.1|2062509_2063757_-|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_000032525.1|2063844_2064429_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000511068.1|2064421_2065672_-|portal	phage portal protein	portal	R9QSV8	Staphylococcus_phage	100.0	1.7e-236
WP_001836552.1|2065677_2065878_-	hypothetical protein	NA	R9QT78	Staphylococcus_phage	100.0	7.6e-27
WP_000133306.1|2065891_2067586_-|terminase	terminase	terminase	A0A1V0E5G5	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|2067588_2068056_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|2068185_2068530_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406187.1|2068545_2068998_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	R9QTP3	Staphylococcus_phage	100.0	1.8e-79
WP_000282753.1|2069112_2069574_-	hypothetical protein	NA	R9QT84	Staphylococcus_phage	100.0	8.7e-74
WP_000265041.1|2069596_2069797_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_001005262.1|2069796_2070447_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000595267.1|2070605_2070755_-	hypothetical protein	NA	R9QSU6	Staphylococcus_phage	100.0	1.8e-17
WP_000195810.1|2070751_2070958_-	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
WP_000185669.1|2070994_2071531_-	dUTP diphosphatase	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_001065083.1|2071523_2071772_-	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
WP_001105621.1|2071764_2072049_-	hypothetical protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
WP_000982708.1|2072045_2072495_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_000693615.1|2072682_2073069_-	hypothetical protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
WP_000131377.1|2073082_2073325_-	hypothetical protein	NA	R9QT89	Staphylococcus_phage	100.0	3.0e-41
WP_000101270.1|2073328_2073697_-	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000401964.1|2073709_2074114_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000338528.1|2074122_2074341_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148329.1|2074347_2075241_-	DnaD domain-containing protein	NA	A0A0E3TAG7	Staphylococcus_phage	100.0	1.1e-141
WP_000934769.1|2075270_2075741_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
WP_072399433.1|2075741_2076311_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	8.4e-87
WP_000138481.1|2076439_2077360_-	recombinase RecT	NA	A0A1V0E5D7	Staphylococcus_phage	100.0	1.0e-166
WP_001813910.1|2077361_2079317_-	AAA family ATPase	NA	R9QT82	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2079313_2079577_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291488.1|2079585_2079846_-	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_000066020.1|2079938_2080100_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001815221.1|2080096_2080417_-	DUF771 domain-containing protein	NA	A0A1V0E5D0	Staphylococcus_phage	100.0	1.1e-56
WP_000801108.1|2080475_2080703_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000389906.1|2080704_2080896_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000768245.1|2080945_2081302_+	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148859.1|2081296_2081491_-	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_001148565.1|2081506_2082295_-	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	100.0	1.2e-144
WP_000639922.1|2082310_2082553_-	DUF739 family protein	NA	R9QSU1	Staphylococcus_phage	100.0	9.5e-40
WP_001083967.1|2082716_2083433_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
WP_000804508.1|2083444_2084302_+	restriction endonuclease	NA	R9QTP0	Staphylococcus_phage	100.0	1.2e-161
WP_000705243.1|2084346_2084529_+	hypothetical protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|2084564_2084711_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|2084707_2085322_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000857176.1|2085429_2086467_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000595401.1|2087585_2088602_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000791404.1|2088623_2089676_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
WP_000206641.1|2090110_2091334_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812008.1|2091705_2092551_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2092612_2093524_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045078.1|2093684_2094992_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000216894.1|2095563_2096190_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	44.5	7.0e-42
WP_000201397.1|2096186_2096366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000767003.1|2097374_2098067_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_000368755.1|2098053_2098659_-	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_000708297.1|2098672_2099422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293079.1|2101015_2101585_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	6.6e-100
WP_072326620.1|2101581_2101794_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	88.6	5.1e-29
WP_001836980.1|2101925_2102453_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	97.1	3.7e-89
WP_000448775.1|2102503_2102722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846292.1|2102739_2103318_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	39.5	1.6e-29
WP_001161659.1|2103329_2103671_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	96.5	2.1e-56
WP_001836978.1|2104017_2104659_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.5	8.0e-110
WP_001149387.1|2104660_2104933_-	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
WP_000148374.1|2104919_2105723_-	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	97.0	6.2e-152
WP_000344761.1|2105898_2107515_-	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.0	1.8e-243
WP_001103943.1|2107589_2107889_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	6.1e-20
WP_001058486.1|2107891_2108101_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_000784875.1|2108093_2108240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000459698.1|2108236_2108554_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	94.3	8.6e-49
WP_000794315.1|2108557_2108770_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE8	Staphylococcus_phage	84.1	3.8e-24
WP_000616253.1|2108943_2109576_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	82.9	2.2e-96
WP_000179352.1|2109584_2110757_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	5.9e-220
WP_000240645.1|2110825_2112442_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2112517_2112802_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
2116006:2116030	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
