assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474715.1_41004_D01	NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	1	133736-133820	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	4	133762-133794|133762-133794|133762-133794|133762-133794	NZ_LS483311.1_1090948-1090916|NZ_LS483311.1_1428518-1428550|NZ_LS483311.1_1516837-1516805|NZ_LS483311.1_2562567-2562599	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|402aa|up_9|NZ_LS483311.1_122882_124088_+,NA|68aa|down_0|NZ_LS483311.1_133881_134085_-	NA|402aa|up_9|NZ_LS483311.1_122882_124088_+	NA	NA|402aa|up_8|NZ_LS483311.1_124088_125294_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_LS483311.1_125304_125862_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_LS483311.1_125861_126749_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_LS483311.1_126802_128065_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_LS483311.1_128141_129287_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_LS483311.1_129351_129678_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_LS483311.1_129684_130068_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_LS483311.1_130494_131982_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_LS483311.1_132627_133587_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_LS483311.1_133881_134085_-	NA	NA|171aa|down_1|NZ_LS483311.1_134263_134776_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_LS483311.1_135117_135858_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|NZ_LS483311.1_135871_136846_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_LS483311.1_136842_137604_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_LS483311.1_137616_138648_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_LS483311.1_138864_139224_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_LS483311.1_139397_140423_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_LS483311.1_140808_142059_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_LS483311.1_142505_149681_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_900474715.1_41004_D01	NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2	242224-242314	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGGCCCACACCCCAACTTGCATTGCCTGTAGAA	33	1	21	242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281|242257-242281	NZ_LS483311.1_133735-133711|NZ_LS483311.1_379924-379900|NZ_LS483311.1_835486-835510|NZ_LS483311.1_840920-840944|NZ_LS483311.1_1428433-1428409|NZ_LS483311.1_1516922-1516946|NZ_LS483311.1_2017278-2017302|NZ_LS483311.1_2359285-2359309|NZ_LS483311.1_2562482-2562458|NZ_LS483311.1_2562540-2562516|NZ_LS483311.1_257500-257476|NZ_LS483311.1_994968-994992|NZ_LS483311.1_1192034-1192010|NZ_LS483311.1_1192089-1192065|NZ_LS483311.1_1432843-1432867|NZ_LS483311.1_1730868-1730892|NZ_LS483311.1_1731041-1731065|NZ_LS483311.1_1820843-1820819|NZ_LS483311.1_2149492-2149468|NZ_LS483311.1_2370133-2370157|NZ_LS483311.1_2643999-2644023	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|49aa|up_4|NZ_LS483311.1_236493_236640_+,NA	NA|699aa|up_9|NZ_LS483311.1_231083_233180_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|156aa|up_8|NZ_LS483311.1_233164_233632_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|93aa|up_7|NZ_LS483311.1_233654_233933_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|420aa|up_6|NZ_LS483311.1_234159_235419_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|352aa|up_5|NZ_LS483311.1_235436_236492_+	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|49aa|up_4|NZ_LS483311.1_236493_236640_+	NA	NA|348aa|up_3|NZ_LS483311.1_236663_237707_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|239aa|up_2|NZ_LS483311.1_238234_238951_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|up_1|NZ_LS483311.1_238943_239969_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|565aa|up_0|NZ_LS483311.1_239990_241685_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|390aa|down_0|NZ_LS483311.1_242735_243905_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|239aa|down_1|NZ_LS483311.1_244180_244897_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|down_2|NZ_LS483311.1_244889_245915_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|563aa|down_3|NZ_LS483311.1_245936_247625_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|down_4|NZ_LS483311.1_247657_249379_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|down_5|NZ_LS483311.1_249522_250197_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|585aa|down_6|NZ_LS483311.1_250441_252196_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|down_7|NZ_LS483311.1_252198_252939_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|down_8|NZ_LS483311.1_253051_253495_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|down_9|NZ_LS483311.1_253487_254189_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional
GCF_900474715.1_41004_D01	NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	3	794387-794469	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	1	1	794414-794442	NZ_LS483311.1_444377-444349	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|NZ_LS483311.1_781043_781250_+,NA|34aa|down_1|NZ_LS483311.1_795925_796027_+,NA|52aa|down_8|NZ_LS483311.1_804092_804248_+	NA|69aa|up_9|NZ_LS483311.1_781043_781250_+	NA	NA|237aa|up_8|NZ_LS483311.1_781337_782048_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_LS483311.1_782031_783036_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_LS483311.1_783509_785450_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_LS483311.1_785720_787604_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_LS483311.1_787615_789397_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_LS483311.1_789618_790596_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_LS483311.1_790588_792103_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_LS483311.1_792342_793401_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_LS483311.1_793695_794238_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_LS483311.1_794917_795835_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_LS483311.1_795925_796027_+	NA	NA|502aa|down_2|NZ_LS483311.1_796104_797610_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_LS483311.1_797950_798451_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_LS483311.1_798470_799337_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_LS483311.1_800137_800536_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_LS483311.1_800498_802604_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_LS483311.1_802721_803693_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_LS483311.1_804092_804248_+	NA	NA|324aa|down_9|NZ_LS483311.1_804286_805258_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_900474715.1_41004_D01	NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	4	1090937-1091019	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCATCCCCCAACTTGCA	26	1	17	1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993|1090963-1090993	NZ_LS483311.1_133747-133717|NZ_LS483311.1_835474-835504|NZ_LS483311.1_840908-840938|NZ_LS483311.1_1428445-1428415|NZ_LS483311.1_1516910-1516940|NZ_LS483311.1_2017266-2017296|NZ_LS483311.1_2359273-2359303|NZ_LS483311.1_2562494-2562464|NZ_LS483311.1_379936-379906|NZ_LS483311.1_994956-994986|NZ_LS483311.1_1730856-1730886|NZ_LS483311.1_1731029-1731059|NZ_LS483311.1_2562552-2562522|NZ_LS483311.1_2643987-2644017|NZ_LS483311.1_1192046-1192016|NZ_LS483311.1_1192101-1192071|NZ_LS483311.1_2370121-2370151	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|42aa|up_1|NZ_LS483311.1_1089958_1090084_+,NA	NA|145aa|up_9|NZ_LS483311.1_1081178_1081613_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|157aa|up_8|NZ_LS483311.1_1081767_1082238_-	pfam10804, DUF2538, Protein of unknown function (DUF2538)	NA|406aa|up_7|NZ_LS483311.1_1082285_1083503_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|398aa|up_6|NZ_LS483311.1_1083953_1085147_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|93aa|up_5|NZ_LS483311.1_1085683_1085962_-	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|202aa|up_4|NZ_LS483311.1_1085970_1086576_-	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III	NA|663aa|up_3|NZ_LS483311.1_1086565_1088554_-	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|367aa|up_2|NZ_LS483311.1_1088553_1089654_-	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|42aa|up_1|NZ_LS483311.1_1089958_1090084_+	NA	NA|106aa|up_0|NZ_LS483311.1_1090224_1090542_-	pfam16403, DUF5011, Domain of unknown function (DUF5011)	NA|287aa|down_0|NZ_LS483311.1_1091467_1092328_-	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|161aa|down_1|NZ_LS483311.1_1092528_1093011_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|375aa|down_2|NZ_LS483311.1_1092997_1094122_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|235aa|down_3|NZ_LS483311.1_1094125_1094830_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|88aa|down_4|NZ_LS483311.1_1094829_1095093_+	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]	NA|224aa|down_5|NZ_LS483311.1_1095094_1095766_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|down_6|NZ_LS483311.1_1095758_1097948_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|down_7|NZ_LS483311.1_1097926_1099411_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|down_8|NZ_LS483311.1_1099403_1100432_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|down_9|NZ_LS483311.1_1100434_1101001_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
GCF_900474715.1_41004_D01	NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	5	1698383-1698470	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTTTTCGTCAGCTTCTATGTTGGGGCCCCA	30	1	11	1698413-1698440|1698413-1698440|1698413-1698440|1698413-1698440|1698413-1698440|1698413-1698440|1698413-1698440|1698413-1698440|1698413-1698440|1698413-1698440|1698413-1698440	NZ_LS483311.1_379835-379808|NZ_LS483311.1_840840-840867|NZ_LS483311.1_848163-848190|NZ_LS483311.1_1091008-1091035|NZ_LS483311.1_1192001-1191974|NZ_LS483311.1_1275748-1275721|NZ_LS483311.1_1428516-1428489|NZ_LS483311.1_1516839-1516866|NZ_LS483311.1_2015911-2015938|NZ_LS483311.1_2026604-2026631|NZ_LS483311.1_974787-974760	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|228aa|up_9|NZ_LS483311.1_1687563_1688247_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_LS483311.1_1688490_1688667_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_LS483311.1_1688959_1690306_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_LS483311.1_1690312_1691065_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_LS483311.1_1691066_1692005_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_LS483311.1_1692008_1693148_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_LS483311.1_1693283_1695116_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_LS483311.1_1695184_1695811_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_LS483311.1_1695842_1696820_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_LS483311.1_1696920_1698045_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_LS483311.1_1698607_1700431_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_LS483311.1_1700776_1701028_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_LS483311.1_1701072_1702047_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NZ_LS483311.1_1702103_1704305_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_LS483311.1_1704309_1704771_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_LS483311.1_1704862_1705549_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_LS483311.1_1705588_1706305_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_LS483311.1_1706307_1706661_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_LS483311.1_1706661_1707246_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_LS483311.1_1707235_1707805_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_900474715.1_41004_D01	NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	6	1818524-1818610	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACATAGA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|38aa|down_4|NZ_LS483311.1_1823060_1823174_-	NA|423aa|up_9|NZ_LS483311.1_1800924_1802193_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_LS483311.1_1802241_1803363_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_LS483311.1_1803710_1805072_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_LS483311.1_1807396_1809154_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_LS483311.1_1809175_1810144_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_LS483311.1_1810412_1811357_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_LS483311.1_1811356_1812214_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_LS483311.1_1812408_1813638_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_LS483311.1_1814087_1817285_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_LS483311.1_1817305_1818247_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_LS483311.1_1818700_1819999_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_LS483311.1_1820203_1820617_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_LS483311.1_1821062_1821752_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_LS483311.1_1821926_1822982_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|38aa|down_4|NZ_LS483311.1_1823060_1823174_-	NA	NA|373aa|down_5|NZ_LS483311.1_1823297_1824416_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_LS483311.1_1824556_1825057_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_LS483311.1_1825302_1826505_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_LS483311.1_1826592_1827540_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_LS483311.1_1827662_1828157_-	PRK00522, tpx, thiol peroxidase
GCF_900474715.1_41004_D01	NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	7	2015794-2015883	7	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	32	1	2	2015826-2015851|2015826-2015851	NZ_LS483311.1_2017286-2017311|NZ_LS483311.1_2562532-2562507	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_LS483311.1_2010041_2010317_+,NA|129aa|up_1|NZ_LS483311.1_2014298_2014685_-,NA|138aa|down_1|NZ_LS483311.1_2017605_2018019_-,NA|37aa|down_2|NZ_LS483311.1_2018047_2018158_-,NA|31aa|down_6|NZ_LS483311.1_2021163_2021256_-	NA|419aa|up_9|NZ_LS483311.1_2007964_2009221_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_LS483311.1_2009223_2009424_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_LS483311.1_2009570_2010035_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_LS483311.1_2010041_2010317_+	NA	NA|406aa|up_5|NZ_LS483311.1_2010594_2011812_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_LS483311.1_2011923_2012553_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_LS483311.1_2012542_2013586_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_LS483311.1_2013582_2014284_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_LS483311.1_2014298_2014685_-	NA	NA|253aa|up_0|NZ_LS483311.1_2014901_2015660_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_LS483311.1_2016188_2017175_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_LS483311.1_2017605_2018019_-	NA	NA|37aa|down_2|NZ_LS483311.1_2018047_2018158_-	NA	NA|244aa|down_3|NZ_LS483311.1_2018243_2018975_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_LS483311.1_2018976_2020290_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_LS483311.1_2020581_2021082_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_LS483311.1_2021163_2021256_-	NA	DEDDh|185aa|down_7|NZ_LS483311.1_2021471_2022026_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_LS483311.1_2022093_2023164_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_LS483311.1_2023410_2023941_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_900474715.1_41004_D01	NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	8	2252402-2252491	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_LS483311.1_2247273_2247504_-,NA|364aa|up_0|NZ_LS483311.1_2251293_2252385_+,NA|35aa|down_0|NZ_LS483311.1_2252826_2252931_-,NA|53aa|down_2|NZ_LS483311.1_2253610_2253769_+	NA|237aa|up_9|NZ_LS483311.1_2242884_2243595_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_LS483311.1_2243715_2244159_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_LS483311.1_2244358_2244772_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_LS483311.1_2245228_2246602_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_LS483311.1_2247273_2247504_-	NA	NA|313aa|up_4|NZ_LS483311.1_2247534_2248473_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_LS483311.1_2248908_2249574_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_LS483311.1_2249725_2250046_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_LS483311.1_2250047_2251028_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_LS483311.1_2251293_2252385_+	NA	NA|35aa|down_0|NZ_LS483311.1_2252826_2252931_-	NA	NA|57aa|down_1|NZ_LS483311.1_2253447_2253618_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_2|NZ_LS483311.1_2253610_2253769_+	NA	NA|286aa|down_3|NZ_LS483311.1_2254426_2255284_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_LS483311.1_2255351_2256134_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_LS483311.1_2256365_2258171_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_LS483311.1_2258851_2260390_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_LS483311.1_2260424_2262557_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_LS483311.1_2262568_2263003_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_LS483311.1_2263002_2264109_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_900474715.1_41004_D01	NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	9	2264732-2264817	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_9|NZ_LS483311.1_2252826_2252931_-,NA|53aa|up_7|NZ_LS483311.1_2253610_2253769_+,NA	NA|35aa|up_9|NZ_LS483311.1_2252826_2252931_-	NA	NA|57aa|up_8|NZ_LS483311.1_2253447_2253618_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|up_7|NZ_LS483311.1_2253610_2253769_+	NA	NA|286aa|up_6|NZ_LS483311.1_2254426_2255284_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_LS483311.1_2255351_2256134_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_LS483311.1_2256365_2258171_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_LS483311.1_2258851_2260390_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_LS483311.1_2260424_2262557_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_LS483311.1_2262568_2263003_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_LS483311.1_2263002_2264109_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_LS483311.1_2272200_2273556_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_LS483311.1_2273582_2274515_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_LS483311.1_2274516_2275326_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_LS483311.1_2275514_2276423_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_LS483311.1_2282617_2283682_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_LS483311.1_2283829_2285272_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_LS483311.1_2285594_2286068_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_LS483311.1_2286166_2287510_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_LS483311.1_2287688_2288372_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_LS483311.1_2288390_2289578_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
