The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	313857	358468	2849927	capsid,terminase,head,tail,plate,integrase,protease,holin,portal	Staphylococcus_phage(92.19%)	65	313747:313764	359207:359224
313747:313764	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_000264743.1|313857_315063_-|integrase	site-specific integrase	integrase	A7YGM7	Staphylococcus_virus	99.5	6.5e-222
WP_000191466.1|315188_315803_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_074370993.1|315799_315946_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	1.7e-15
WP_000825948.1|316175_316760_-	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
WP_000525004.1|316777_317239_-	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000333630.1|317251_317566_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_001121027.1|317717_317954_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_111724364.1|317967_318744_+	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	99.6	9.0e-140
WP_000939498.1|318772_318916_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|318905_319115_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_001025401.1|319170_319416_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|319384_319750_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001097552.1|319804_320020_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001124159.1|320044_320308_+	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	98.9	1.4e-44
WP_001285963.1|320320_320482_+	DUF1270 family protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
WP_000174994.1|320560_320884_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_111724365.1|320898_321261_+	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	99.2	1.9e-55
WP_047216521.1|321257_322424_+	DUF2800 domain-containing protein	NA	A0A2D1G5B8	Staphylococcus_phage	99.7	1.2e-220
WP_000645042.1|322449_323007_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_111724450.1|323075_325028_+	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	99.2	0.0e+00
WP_000152769.1|325039_325195_+	hypothetical protein	NA	A0A2I6PDP0	Staphylococcus_phage	94.1	3.5e-19
WP_001187249.1|325194_325380_+	DUF3113 family protein	NA	A0A0N9BBI1	Staphylococcus_phage	95.1	6.0e-26
WP_000029381.1|325380_325740_+	hypothetical protein	NA	A0A0E3T8L4	Staphylococcus_phage	95.8	2.7e-59
WP_016528724.1|325740_325989_+	hypothetical protein	NA	Q4ZBT7	Staphylococcus_virus	93.6	3.8e-36
WP_001062709.1|326003_326396_+	hypothetical protein	NA	A0A2I6PE39	Staphylococcus_phage	100.0	1.6e-68
WP_000983947.1|326392_326584_+	hypothetical protein	NA	Q4ZBT5	Staphylococcus_virus	100.0	1.5e-27
WP_000615884.1|326583_327015_+	hypothetical protein	NA	Q4ZBT4	Staphylococcus_virus	99.3	1.6e-74
WP_111724366.1|327007_327256_+	DUF1024 family protein	NA	A0A0E3T8I2	Staphylococcus_phage	93.9	1.0e-36
WP_000185680.1|327248_327785_+	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_000028780.1|327821_328064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000195833.1|328060_328297_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	92.3	1.9e-32
WP_000481976.1|328321_328558_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	93.6	7.6e-34
WP_001568228.1|328547_328937_+	hypothetical protein	NA	M9QX07	Staphylococcus_phage	100.0	2.8e-65
WP_000595260.1|328933_329086_+	transcriptional activator RinB	NA	A7TWI2	Staphylococcus_phage	100.0	2.6e-19
WP_000265258.1|329153_329354_+	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_172451577.1|329405_331853_+	hypothetical protein	NA	R4WAL1	Staphylococcus_phage	99.0	0.0e+00
WP_015978074.1|331955_332060_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_000665204.1|332193_332484_+	VRR-NUC domain-containing protein	NA	A0A2I6PDQ7	Staphylococcus_phage	100.0	4.9e-51
WP_001799526.1|332464_333832_+	DEAD/DEAH box helicase	NA	A0A2I6PDQ0	Staphylococcus_phage	100.0	6.0e-264
WP_000513701.1|333844_334282_+	transcriptional regulator	NA	A0A2I6PDN2	Staphylococcus_phage	100.0	6.1e-77
WP_000196700.1|334443_334758_+	HNH endonuclease	NA	A0A2I6PDR3	Staphylococcus_phage	100.0	8.5e-57
WP_000778930.1|334884_335190_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PDN6	Staphylococcus_phage	100.0	3.7e-49
WP_000153549.1|335179_336871_+|terminase	terminase large subunit	terminase	A0A2I6PDP8	Staphylococcus_phage	99.8	0.0e+00
WP_001100667.1|336875_338114_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	1.5e-234
WP_111724367.1|338097_338871_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	99.6	3.2e-137
WP_001142734.1|338882_340046_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|340114_340393_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395499.1|340404_340737_+	hypothetical protein	NA	A0A2I6PEH8	Staphylococcus_phage	100.0	3.1e-57
WP_000110019.1|340733_341135_+	hypothetical protein	NA	R4WAN5	Staphylococcus_phage	100.0	8.1e-68
WP_001636966.1|341135_341531_+	DUF3168 domain-containing protein	NA	R4WAV1	Staphylococcus_phage	99.2	4.4e-66
WP_031768043.1|341565_342207_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	98.1	5.5e-119
WP_111724368.1|342298_342754_+	Ig domain-containing protein	NA	Q9B0D4	Staphylococcus_phage	96.7	4.5e-75
WP_000589165.1|342811_343162_+	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|343203_343362_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_111724369.1|343375_349576_+|tail	phage tail tape measure protein	tail	U5U762	Staphylococcus_phage	98.6	0.0e+00
WP_001190533.1|349575_350400_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|350408_351992_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|351991_352282_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|352297_354208_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067131.1|354207_355674_+|plate	phage baseplate upper protein	plate	A0A2I6PE72	Staphylococcus_phage	100.0	1.5e-273
WP_001166599.1|355673_356063_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|356055_356220_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|356265_356565_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339144.1|356700_357003_+|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_111724370.1|357013_358468_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PF47	Staphylococcus_phage	99.2	1.1e-287
359207:359224	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	403188	418719	2849927	coat,terminase,integrase	Staphylococcus_phage(100.0%)	25	404724:404773	419435:419484
WP_001052483.1|403188_403380_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|403623_403920_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|403940_404444_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|404495_404738_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
404724:404773	attL	AAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGC	NA	NA	NA	NA
WP_001797289.1|404976_405876_-	Abi family protein	NA	NA	NA	NA	NA
WP_111724373.1|405877_407092_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	96.5	3.6e-220
WP_031903008.1|407370_408066_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000608987.1|408210_408423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031903009.1|408455_408728_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.4	3.8e-37
WP_000784875.1|408739_408886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|408878_409088_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_111724374.1|409090_409390_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	5.1e-19
WP_111724375.1|409464_411081_+	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.2	8.1e-244
WP_111724376.1|411256_412060_+	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	94.8	1.4e-148
WP_111724377.1|412046_412319_+	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	92.2	1.7e-40
WP_111724378.1|412320_412962_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	95.3	9.1e-114
WP_001288441.1|413405_413750_+	hypothetical protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
WP_031769358.1|413784_414363_+	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	100.0	9.2e-81
WP_001160678.1|414362_414539_+	hypothetical protein	NA	A0A1W6JQJ5	Staphylococcus_phage	100.0	7.7e-23
WP_031765331.1|414591_415119_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	95.4	4.3e-85
WP_111724451.1|415250_415463_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	94.3	2.7e-30
WP_111724379.1|415459_415975_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	88.4	1.1e-74
WP_111724380.1|416192_416525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145959531.1|416599_417280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063636416.1|418164_418719_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	3.7e-71
419435:419484	attR	AAAGAAGAACAATAATATATAATTTATTGTCAAACCCCGTAGGCATAGGC	NA	NA	NA	NA
>prophage 3
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	772551	780370	2849927		Hokovirus(16.67%)	10	NA	NA
WP_000244417.1|772551_773607_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.5	1.6e-14
WP_000149344.1|773606_774293_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|774267_774741_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|775081_775522_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|775801_776386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|776484_777198_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|777201_777621_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|777622_778291_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|778641_779235_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217802.1|779218_780370_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
>prophage 4
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	792342	806959	2849927		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|792342_793401_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|793695_794238_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|794917_795835_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|795925_796027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|796104_797610_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|797950_798451_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068503.1|798470_799337_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|800137_800536_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|800498_802604_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|802721_803693_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|804092_804248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|804286_805258_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|805244_806201_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|806197_806959_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 5
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	890992	937013	2849927	capsid,terminase,head,tail,plate,integrase,holin,portal	Staphylococcus_phage(85.29%)	71	886308:886323	943746:943761
886308:886323	attL	AAAGAATTACCAAAAG	NA	NA	NA	NA
WP_001006459.1|890992_892243_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.3e-111
WP_001010508.1|892232_892697_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|892850_894248_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_031836904.1|894315_895365_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	7.7e-203
WP_000143212.1|895477_895678_+	excisionase	NA	Q38044	Staphylococcus_phage	100.0	5.6e-30
WP_000391592.1|895614_896520_-	hypothetical protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.4e-168
WP_031836905.1|896551_897277_-	PH domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	99.6	2.9e-124
WP_000775187.1|897304_897979_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_001055143.1|897995_898328_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000108122.1|898590_898785_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001002757.1|898784_899552_+	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
WP_000187184.1|899552_899777_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001094943.1|899816_900266_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	100.0	3.0e-79
WP_000977378.1|900279_900501_+	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
WP_000066017.1|900493_900655_+	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_000291090.1|900746_901007_+	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000815401.1|901016_901238_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000139720.1|901230_901854_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000934385.1|901853_902282_+	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	100.0	3.9e-60
WP_031836907.1|902295_902970_+	phi PV83 orf 19-like protein	NA	C8CGZ0	Staphylococcus_phage	98.7	2.0e-127
WP_001081076.1|902966_903116_+	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_000414755.1|903108_903390_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000190253.1|903455_904226_+	conserved phage C-terminal domain-containing protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
WP_031836908.1|904235_905015_+	ATP-binding protein	NA	A0A1X9H042	Staphylococcus_phage	98.8	1.6e-144
WP_031836909.1|905008_905167_+	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	94.2	2.2e-21
WP_001123674.1|905179_905401_+	DUF3269 family protein	NA	A0A1W6JQ35	Staphylococcus_phage	100.0	1.7e-35
WP_031836910.1|905410_905818_+	RusA family crossover junction endodeoxyribonuclease	NA	A9CR74	Staphylococcus_phage	97.8	4.2e-72
WP_031836911.1|905817_906003_+	DUF3113 family protein	NA	M9NSS9	Staphylococcus_phage	96.7	1.6e-26
WP_000536051.1|906003_906366_+	hypothetical protein	NA	B7T0B4	Staphylococcus_virus	75.8	2.1e-46
WP_000022736.1|906365_906620_+	DUF3310 domain-containing protein	NA	Q6R831	Staphylococcus_virus	100.0	1.3e-42
WP_060474161.1|906619_906868_+	hypothetical protein	NA	A0A2K9VBX5	Staphylococcus_phage	100.0	1.2e-40
WP_000693989.1|906881_907088_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_031836912.1|907090_907495_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	98.5	1.6e-71
WP_000983953.1|907491_907686_+	hypothetical protein	NA	A0A0E3XCV8	Staphylococcus_phage	100.0	2.5e-27
WP_000982706.1|907682_908135_+	hypothetical protein	NA	A0A0E3XBJ3	Staphylococcus_phage	100.0	1.4e-81
WP_031928724.1|908131_908635_+	hypothetical protein	NA	A0A2H4JGK2	uncultured_Caudovirales_phage	95.8	1.5e-87
WP_094321643.1|908637_908835_+	hypothetical protein	NA	A0A0E3TAH1	Staphylococcus_phage	98.5	6.1e-29
WP_031836882.1|908827_909076_+	DUF1024 family protein	NA	Q4ZBT3	Staphylococcus_virus	97.6	3.5e-37
WP_031836883.1|909068_909602_+	dUTP pyrophosphatase	NA	A1KX16	Staphylococcus_virus	98.3	6.0e-95
WP_031836884.1|909662_909923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031836885.1|909971_910496_+	hypothetical protein	NA	A0A0K1LKF9	Staphylococcus_phage	96.6	2.9e-86
WP_000595259.1|910542_910716_+	transcriptional activator RinB	NA	A0A0E3TAH3	Staphylococcus_phage	100.0	1.7e-22
WP_000286968.1|910716_911118_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000594088.1|911470_911965_+|terminase	terminase small subunit	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037585.1|911957_913181_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0E3XCW6	Staphylococcus_phage	100.0	1.5e-242
WP_000177426.1|913177_914602_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	100.0	4.8e-272
WP_000184132.1|914570_915521_+|head	phage head morphogenesis protein	head	A0A0E3TAH5	Staphylococcus_phage	99.7	1.2e-175
WP_001019219.1|915616_916201_+	DUF4355 domain-containing protein	NA	A0A0N7E0U8	Staphylococcus_phage	100.0	1.3e-77
WP_000235168.1|916217_917132_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_000002931.1|917143_917287_+	hypothetical protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
WP_000177348.1|917292_917643_+|head,tail	phage head-tail adapter protein	head,tail	A0A0E3T9I9	Staphylococcus_phage	100.0	1.9e-60
WP_000483041.1|917654_917990_+|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_001151323.1|917976_918384_+	HK97 gp10 family phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	100.0	3.4e-74
WP_000270190.1|918396_918822_+	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
WP_000057583.1|918822_919380_+	hypothetical protein	NA	A0A0E3XD60	Staphylococcus_phage	100.0	1.8e-102
WP_000134337.1|919446_919953_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000617400.1|920132_920282_+	hypothetical protein	NA	A0A0E3TAI0	Staphylococcus_phage	100.0	2.8e-18
WP_000379446.1|920285_923171_+	hypothetical protein	NA	A0A0E3T8J3	Staphylococcus_phage	100.0	0.0e+00
WP_000560181.1|923185_924127_+|tail	phage tail family protein	tail	Q4ZBQ4	Staphylococcus_phage	100.0	5.2e-182
WP_029549389.1|924137_926024_+|tail	phage tail protein	tail	A0A0E3XBK1	Staphylococcus_phage	100.0	0.0e+00
WP_000323240.1|926036_927935_+	hypothetical protein	NA	A0A0E3T9J5	Staphylococcus_phage	100.0	0.0e+00
WP_000259635.1|927934_929758_+|plate	BppU family phage baseplate upper protein	plate	A0A0E3TAI3	Staphylococcus_phage	100.0	0.0e+00
WP_000705915.1|929757_930135_+	DUF2977 domain-containing protein	NA	A0A0E3T8J6	Staphylococcus_phage	100.0	9.6e-55
WP_001790193.1|930138_930312_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466769.1|930352_930652_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_000524050.1|930788_932663_+	glucosaminidase domain-containing protein	NA	A0A0E3T9J6	Staphylococcus_phage	100.0	0.0e+00
WP_000276657.1|932675_933914_+|plate	BppU family phage baseplate upper protein	plate	A0A0E3TAI6	Staphylococcus_phage	100.0	1.2e-210
WP_000398858.1|933919_934315_+	hypothetical protein	NA	A0A0E3T8J8	Staphylococcus_phage	100.0	1.2e-68
WP_000351119.1|934370_934646_+|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_111724406.1|934632_936045_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0E3TAN9	Staphylococcus_phage	99.8	9.8e-286
WP_001065781.1|936170_937013_+	exfoliative toxin A	NA	A0A0E3T8P7	Staphylococcus_phage	100.0	2.3e-157
943746:943761	attR	AAAGAATTACCAAAAG	NA	NA	NA	NA
>prophage 6
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	1092528	1101001	2849927		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1092528_1093011_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|1092997_1094122_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1094125_1094830_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1094829_1095093_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1095094_1095766_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1095758_1097948_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483713.1|1097926_1099411_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030811.1|1099403_1100432_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1100434_1101001_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	1330606	1393410	2849927	capsid,terminase,head,tail,plate,integrase,tRNA,transposase,holin,portal	Staphylococcus_phage(50.0%)	73	1357258:1357295	1392004:1392041
WP_000277738.1|1330606_1332253_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_000026308.1|1332627_1332843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001222105.1|1333016_1333814_+	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA	NA
WP_000804320.1|1333953_1335714_+	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA	NA
WP_000190140.1|1335714_1336581_+	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA	NA
WP_000655671.1|1336674_1336968_+	thiamine-binding protein	NA	NA	NA	NA	NA
WP_001001521.1|1337101_1338646_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_000282386.1|1338646_1339012_+	YlbF family regulator	NA	NA	NA	NA	NA
WP_000842277.1|1339038_1339530_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
WP_000073352.1|1339832_1342451_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
WP_000516264.1|1342463_1344473_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.7	2.8e-60
WP_001077635.1|1344478_1345021_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_111724416.1|1345495_1346314_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_000417369.1|1346442_1347939_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_001218596.1|1348096_1349770_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_000136950.1|1349919_1350834_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001548613.1|1350851_1351787_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_000561358.1|1351801_1352035_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_000448078.1|1352256_1352733_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
WP_000068626.1|1352844_1354083_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000652047.1|1354101_1355340_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000624945.1|1355582_1355951_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001126603.1|1355969_1357310_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
1357258:1357295	attL	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
WP_001836882.1|1357449_1358577_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
WP_001183750.1|1358629_1359325_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
WP_000554410.1|1359336_1359720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664917.1|1359866_1360259_-	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
WP_001209962.1|1360426_1360645_+	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
WP_000932238.1|1360671_1360947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000392387.1|1361211_1361382_+	hypothetical protein	NA	Q4ZDZ8	Staphylococcus_virus	89.3	2.4e-21
WP_000800341.1|1361370_1361577_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
WP_001157025.1|1361637_1362321_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
WP_000072841.1|1362419_1362596_+	DUF1270 family protein	NA	E9LT78	Staphylococcus_phage	70.4	1.9e-13
WP_000786993.1|1362666_1362984_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786634.1|1362973_1363240_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
WP_001004327.1|1363244_1363781_+	host-nuclease inhibitor Gam family protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
WP_000907597.1|1363781_1364561_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
WP_000702007.1|1364587_1365136_+	hypothetical protein	NA	A7TWM8	Staphylococcus_phage	92.9	1.1e-91
WP_000929466.1|1365148_1366051_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
WP_000946005.1|1366051_1366342_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
WP_000714411.1|1366356_1366515_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	6.7e-18
WP_000860978.1|1366520_1366832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185175.1|1366824_1367355_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	1.2e-21
WP_106905708.1|1367485_1367593_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	87.5	1.2e-07
WP_000835355.1|1367589_1368054_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
WP_000653931.1|1368330_1368819_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	28.3	8.7e-08
WP_000090969.1|1368971_1369400_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207538.1|1369386_1370661_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.2	3.2e-195
WP_000158570.1|1370673_1372122_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	3.7e-195
WP_001282613.1|1372111_1373641_+|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	61.3	2.8e-108
WP_031811279.1|1373840_1373969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000429653.1|1373935_1374514_+	DUF4355 domain-containing protein	NA	Q4ZE34	Staphylococcus_virus	50.8	1.9e-09
WP_000200243.1|1374532_1375444_+	hypothetical protein	NA	Q4ZE33	Staphylococcus_virus	59.7	6.5e-97
WP_111724417.1|1375521_1375995_+	Ig-like domain-containing protein	NA	A0A2H4J9T3	uncultured_Caudovirales_phage	31.6	9.7e-12
WP_001010139.1|1376010_1376337_+|head,tail	phage head-tail connector protein	head,tail	Q4ZE31	Staphylococcus_virus	56.4	2.1e-26
WP_001106897.1|1376336_1376642_+	hypothetical protein	NA	Q4ZE30	Staphylococcus_virus	40.6	6.4e-17
WP_001198140.1|1376642_1376993_+	HK97 gp10 family phage protein	NA	H9A0N6	Staphylococcus_phage	60.0	9.3e-36
WP_000680037.1|1377002_1377398_+	hypothetical protein	NA	H9A0N7	Staphylococcus_phage	42.3	1.9e-21
WP_000276225.1|1377409_1378009_+|tail	phage major tail protein, TP901-1 family	tail	H9A0N8	Staphylococcus_phage	47.5	7.4e-17
WP_000256347.1|1378070_1378415_+	hypothetical protein	NA	A0A1J0MFH0	Staphylococcus_phage	58.9	7.7e-35
WP_001808026.1|1378465_1378819_+	hypothetical protein	NA	Q4ZE25	Staphylococcus_virus	72.3	1.7e-37
WP_031837017.1|1378830_1382001_+	membrane protein	NA	Q4ZE24	Staphylococcus_virus	54.5	1.6e-94
WP_000350618.1|1382015_1382951_+|tail	phage tail family protein	tail	A0A1J0MF79	Staphylococcus_phage	55.9	2.1e-98
WP_006190231.1|1382959_1384645_+|tail	phage tail protein	tail	Q4ZE19	Staphylococcus_virus	46.5	1.4e-108
WP_000700623.1|1384662_1385676_+	SGNH/GDSL hydrolase family protein	NA	A0A1J0MFI8	Staphylococcus_phage	52.6	6.5e-98
WP_006190235.1|1385694_1387092_+|plate	phage baseplate upper protein	plate	A0A1J0MFK8	Staphylococcus_phage	44.7	2.6e-105
WP_000438657.1|1387104_1387494_+|holin	phage holin family protein	holin	A0A1S6L1J2	Staphylococcus_phage	38.2	5.3e-16
WP_001140244.1|1387558_1388479_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	50.8	1.0e-65
WP_001808024.1|1388946_1389144_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	3.7e-10
WP_001808025.1|1389364_1390300_+	Abi family protein	NA	A0A059NT88	Lactococcus_phage	44.0	5.3e-70
WP_000477485.1|1390747_1391164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076692498.1|1391590_1391815_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	75.4	1.6e-20
WP_001065797.1|1392069_1393410_+|capsid	minor capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	58.9	1.1e-140
1392004:1392041	attR	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
>prophage 8
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	1669968	1678298	2849927	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_031775221.1|1669968_1670754_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	1.0e-18
WP_000924220.1|1670879_1671770_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062177.1|1671779_1673126_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683936.1|1673239_1674340_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624589.1|1674342_1675020_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1675150_1676257_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217244.1|1676480_1678298_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 9
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	1746131	1755174	2849927	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1746131_1746650_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594985.1|1746671_1748945_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
WP_000749806.1|1749147_1751427_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1751701_1751962_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1751980_1753120_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019174.1|1753142_1754168_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1754169_1755174_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	1881070	1926785	2849927	protease,tRNA	Staphylococcus_phage(91.67%)	43	NA	NA
WP_049280506.1|1881070_1887631_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	96.5	5.0e-300
WP_000836465.1|1887956_1888268_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001808015.1|1888289_1890707_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_001025061.1|1890994_1892176_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1892285_1893239_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1893235_1893799_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1893918_1894320_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1894890_1895718_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1895720_1895840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196345.1|1895951_1896953_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	100.0	3.1e-185
WP_001008549.1|1897074_1897539_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159035.1|1897551_1898733_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_000493888.1|1898743_1899376_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
WP_000077352.1|1899382_1900426_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
WP_111724426.1|1900906_1902409_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221177.1|1902931_1903246_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1903245_1904538_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1904555_1904951_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1905245_1906100_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1906375_1906600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1906798_1907269_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1907381_1907825_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1907811_1908255_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168907.1|1908550_1909186_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1909625_1910339_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1910598_1910901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1911156_1911522_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623478.1|1911518_1911872_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453298.1|1912254_1913088_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1913299_1914208_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1914332_1915526_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1915895_1917488_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_016169057.1|1917865_1918612_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
WP_000672014.1|1918616_1919090_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718110.1|1919155_1919413_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	3.6e-45
WP_000778516.1|1919409_1920411_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.2	9.7e-187
WP_000348379.1|1920415_1921894_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	100.0	1.5e-289
WP_111724454.1|1922052_1922508_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.4e-78
WP_001793444.1|1922810_1923461_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	3.0e-56
WP_000070649.1|1923541_1924537_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
WP_000669028.1|1924610_1925237_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	3.9e-93
WP_000957233.1|1925322_1926006_+	enterotoxin I	NA	A0EX09	Staphylococcus_phage	33.5	3.8e-25
WP_000764922.1|1926032_1926785_+	hypothetical protein	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.2	4.4e-51
>prophage 11
NZ_LS483311	Staphylococcus aureus strain NCTC6136 chromosome 1	2849927	2027264	2125853	2849927	capsid,tail,head,terminase,integrase,protease,tRNA,holin,portal	Staphylococcus_phage(91.03%)	117	2090130:2090147	2115774:2115791
WP_000545370.1|2027264_2028692_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027918.1|2028704_2030162_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2030163_2030466_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|2030832_2032371_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|2032459_2033659_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2033671_2035675_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2035678_2037871_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272071.1|2037867_2038560_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2038731_2039034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2039142_2040438_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827762.1|2041298_2042465_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2042495_2042822_+	staphostatin A	NA	NA	NA	NA	NA
WP_000011542.1|2043265_2043868_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|2044138_2044960_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284433.1|2044952_2046422_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|2046605_2047682_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2047701_2048496_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2048567_2048675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323153.1|2048685_2050248_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275707.1|2050451_2051549_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
WP_000149686.1|2051920_2052481_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2052533_2053463_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|2053655_2053829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021209.1|2053880_2055260_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2055379_2056408_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2056677_2057079_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2057651_2057825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2058275_2059316_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2059372_2060215_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2060211_2060769_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2060828_2061353_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2061473_2062037_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2062102_2062843_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2062842_2063715_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645728.1|2063711_2064392_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2064392_2065289_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2065285_2065666_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2065924_2066101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2066343_2066442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2066642_2067929_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001807971.1|2068553_2070302_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669791.1|2071259_2071439_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|2071749_2072010_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2072062_2072413_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2073097_2073547_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000920037.1|2074626_2075118_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	100.0	3.6e-86
WP_000861038.1|2075308_2076064_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2076075_2076330_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2076381_2076489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2076541_2076718_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2076867_2077164_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2077221_2077509_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2077555_2077708_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582186.1|2077697_2081483_-	hypothetical protein	NA	C8CH32	Staphylococcus_phage	99.7	0.0e+00
WP_000567390.1|2081498_2082983_-|tail	phage tail family protein	tail	A0A068A242	Staphylococcus_phage	100.0	1.5e-297
WP_000504564.1|2082979_2087524_-|tail	phage tail tape measure protein	tail	A0A075M036	Staphylococcus_phage	99.1	0.0e+00
WP_158091965.1|2087580_2087730_-	hypothetical protein	NA	A0A068A227	Staphylococcus_phage	100.0	2.3e-20
WP_001096355.1|2087768_2088119_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2088168_2088393_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|2088434_2089079_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2089079_2089487_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|2089483_2089888_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2089884_2090247_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2090130:2090147	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2090230_2090515_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2090504_2090789_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_061823656.1|2090808_2091954_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	99.7	3.6e-214
WP_000642728.1|2091977_2092715_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2092698_2093886_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2093901_2095563_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2095559_2095904_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988330.1|2096034_2096334_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2096565_2096982_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2097009_2097210_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595267.1|2098017_2098167_-	hypothetical protein	NA	R9QSU6	Staphylococcus_phage	100.0	1.8e-17
WP_000195810.1|2098163_2098370_-	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
WP_000185669.1|2098406_2098943_-	dUTP diphosphatase	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_001065083.1|2098935_2099184_-	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
WP_001105621.1|2099176_2099461_-	hypothetical protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
WP_000982708.1|2099457_2099907_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_000983954.1|2099903_2100098_-	hypothetical protein	NA	A0A2I6PE33	Staphylococcus_phage	100.0	2.5e-27
WP_000693615.1|2100094_2100481_-	hypothetical protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
WP_000131377.1|2100494_2100737_-	hypothetical protein	NA	R9QT89	Staphylococcus_phage	100.0	3.0e-41
WP_000101270.1|2100740_2101109_-	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000401964.1|2101121_2101526_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000338528.1|2101534_2101753_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148329.1|2101759_2102653_-	DnaD domain-containing protein	NA	A0A0E3TAG7	Staphylococcus_phage	100.0	1.1e-141
WP_000934769.1|2102682_2103153_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
WP_071621397.1|2103153_2103771_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2103851_2104772_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700555.1|2104773_2106717_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2106725_2106989_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2106997_2107258_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2107262_2107565_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2107659_2107821_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2107817_2108141_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762521.1|2108195_2108576_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001148862.1|2108562_2108760_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148605.1|2108775_2109528_-	phage antirepressor KilAC domain-containing protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|2109578_2109908_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025404.1|2109896_2110112_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2110127_2110391_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2110387_2110561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2110523_2111237_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2111252_2112185_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2112190_2112532_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|2112735_2112918_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|2113017_2113482_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857198.1|2113540_2114578_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000595394.1|2115696_2116713_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.6	8.7e-26
2115774:2115791	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_031588767.1|2116734_2117790_-	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.3e-35
WP_000206640.1|2118224_2119448_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812008.1|2119819_2120665_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825512.1|2120726_2121638_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045078.1|2121798_2123106_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2123959_2124403_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_072419900.1|2124508_2124946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293059.1|2125262_2125853_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	94.7	1.2e-96
