assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474625.1_39888_E01	NZ_LS483303	Escherichia coli strain NCTC9967 chromosome 1	1	952437-954236	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	29,29,29	29	Orphan	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA|47aa|up_1|NZ_LS483303.1_951146_951287_-,NA	NA|434aa|up_9|NZ_LS483303.1_941843_943145_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_LS483303.1_943192_945427_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_LS483303.1_945504_945753_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_LS483303.1_945752_946088_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_LS483303.1_946158_946950_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_LS483303.1_947177_948815_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_LS483303.1_948902_950201_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_LS483303.1_950260_951133_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_LS483303.1_951146_951287_-	NA	NA|224aa|up_0|NZ_LS483303.1_951425_952097_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_LS483303.1_955662_957141_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_LS483303.1_957167_958445_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_LS483303.1_958763_959549_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|470aa|down_3|NZ_LS483303.1_961871_963281_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_LS483303.1_963258_964038_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|NZ_LS483303.1_964034_964895_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_LS483303.1_965042_965618_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_LS483303.1_965634_965895_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_LS483303.1_965885_967157_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|down_9|NZ_LS483303.1_967234_967597_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_900474625.1_39888_E01	NZ_LS483303	Escherichia coli strain NCTC9967 chromosome 1	2	977330-977907	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GNGTTCCCCGCGNCAGCGGGGATAAACCG,GTTCCCCGCGTCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	9,9,8	9	Unclear	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|424aa|up_9|NZ_LS483303.1_965885_967157_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_8|NZ_LS483303.1_967234_967597_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_LS483303.1_967915_969715_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_LS483303.1_969714_971427_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_LS483303.1_971500_972235_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|383aa|up_4|NZ_LS483303.1_973094_974242_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas5|225aa|up_3|NZ_LS483303.1_974744_975419_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_LS483303.1_975405_976005_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_LS483303.1_976020_976938_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_LS483303.1_976939_977224_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_LS483303.1_977988_979026_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_LS483303.1_979277_980186_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_LS483303.1_980187_981615_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_LS483303.1_981614_982220_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_LS483303.1_982269_982593_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_LS483303.1_982786_983098_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_LS483303.1_983116_983827_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_LS483303.1_983826_984306_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_LS483303.1_984302_985352_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_LS483303.1_985332_986094_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_900474625.1_39888_E01	NZ_LS483303	Escherichia coli strain NCTC9967 chromosome 1	3	1504419-1504536	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|268aa|up_9|NZ_LS483303.1_1493055_1493859_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_LS483303.1_1493899_1494802_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_LS483303.1_1494994_1496185_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_LS483303.1_1496181_1497441_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_LS483303.1_1497430_1499059_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_LS483303.1_1499331_1500690_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_LS483303.1_1500694_1501771_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_LS483303.1_1502233_1502884_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_LS483303.1_1502937_1503192_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_LS483303.1_1503191_1504322_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_LS483303.1_1504555_1506841_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_LS483303.1_1507536_1511289_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_LS483303.1_1511416_1512139_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_LS483303.1_1512285_1514913_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_LS483303.1_1515061_1516750_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_LS483303.1_1516746_1517370_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_LS483303.1_1517513_1521908_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_LS483303.1_1521908_1523558_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_LS483303.1_1523562_1524339_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_LS483303.1_1524412_1525597_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_900474625.1_39888_E01	NZ_LS483303	Escherichia coli strain NCTC9967 chromosome 1	4	2124102-2124225	4	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA|30aa|down_7|NZ_LS483303.1_2133121_2133211_+	NA|471aa|up_9|NZ_LS483303.1_2113556_2114969_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_LS483303.1_2115525_2115735_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_LS483303.1_2116189_2116816_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_LS483303.1_2116836_2118939_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_LS483303.1_2118951_2119590_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_LS483303.1_2119653_2120322_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_LS483303.1_2120318_2121104_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_LS483303.1_2121107_2121920_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_LS483303.1_2121931_2123536_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_LS483303.1_2123661_2123967_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_LS483303.1_2124539_2125796_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_LS483303.1_2125836_2127210_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_LS483303.1_2127424_2128066_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_LS483303.1_2128105_2129254_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_LS483303.1_2129544_2130756_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_LS483303.1_2130868_2131801_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_LS483303.1_2131797_2132823_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_LS483303.1_2133121_2133211_+	NA	NA|390aa|down_8|NZ_LS483303.1_2133376_2134546_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_LS483303.1_2134780_2135362_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_900474625.1_39888_E01	NZ_LS483303	Escherichia coli strain NCTC9967 chromosome 1	5	2798666-2798757	5	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA|70aa|up_9|NZ_LS483303.1_2787741_2787951_-,NA	NA|70aa|up_9|NZ_LS483303.1_2787741_2787951_-	NA	NA|1321aa|up_8|NZ_LS483303.1_2788005_2791968_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_LS483303.1_2792007_2792646_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_LS483303.1_2792933_2794025_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_LS483303.1_2794024_2794717_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_LS483303.1_2794728_2795115_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_LS483303.1_2795122_2795923_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_LS483303.1_2795932_2796523_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_LS483303.1_2796533_2797028_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_LS483303.1_2797048_2798377_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_LS483303.1_2799180_2799777_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_LS483303.1_2799797_2800025_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_LS483303.1_2800062_2801304_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|417aa|down_3|NZ_LS483303.1_2801598_2802849_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_LS483303.1_2803108_2804029_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_LS483303.1_2804028_2804334_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_LS483303.1_2804485_2805085_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_LS483303.1_2805081_2807628_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_LS483303.1_2807627_2808800_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_LS483303.1_2808929_2809622_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_900474625.1_39888_E01	NZ_LS483303	Escherichia coli strain NCTC9967 chromosome 1	6	2941039-2941244	6,3,3	CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|815aa|up_9|NZ_LS483303.1_2923480_2925925_-	PRK14990, PRK14990, anaerobic dimethyl sulfoxide reductase subunit A; Provisional	NA|431aa|up_8|NZ_LS483303.1_2926163_2927456_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_7|NZ_LS483303.1_2927546_2928890_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_6|NZ_LS483303.1_2928900_2929512_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|165aa|up_5|NZ_LS483303.1_2933789_2934284_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_LS483303.1_2934828_2935794_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_LS483303.1_2935916_2937683_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_LS483303.1_2937683_2939405_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_LS483303.1_2939446_2940151_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_LS483303.1_2940435_2940654_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_LS483303.1_2941454_2943731_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_LS483303.1_2943761_2944082_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_LS483303.1_2944404_2944629_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_LS483303.1_2944701_2946648_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_LS483303.1_2946644_2947760_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_LS483303.1_2947910_2948867_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_LS483303.1_2948863_2950522_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_LS483303.1_2950947_2951643_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_LS483303.1_2952099_2952999_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_LS483303.1_2953142_2954795_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_900474625.1_39888_E01	NZ_LS483303	Escherichia coli strain NCTC9967 chromosome 1	7	3061127-3061271	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|330aa|up_9|NZ_LS483303.1_3049025_3050015_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_LS483303.1_3050411_3051320_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_LS483303.1_3051511_3053533_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_LS483303.1_3054111_3054789_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_LS483303.1_3054781_3055537_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_LS483303.1_3055523_3056678_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_LS483303.1_3056674_3057715_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_LS483303.1_3057801_3059091_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_LS483303.1_3059149_3059626_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_LS483303.1_3059777_3061061_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_LS483303.1_3061294_3063556_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|332aa|down_1|NZ_LS483303.1_3066020_3067016_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_2|NZ_LS483303.1_3067170_3067989_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_3|NZ_LS483303.1_3067989_3069048_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_4|NZ_LS483303.1_3069050_3069740_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_5|NZ_LS483303.1_3069739_3070513_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_6|NZ_LS483303.1_3070679_3070829_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_7|NZ_LS483303.1_3070957_3071746_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|491aa|down_8|NZ_LS483303.1_3071813_3073286_+	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional	NA|339aa|down_9|NZ_LS483303.1_3073546_3074563_+	PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional
GCF_900474625.1_39888_E01	NZ_LS483303	Escherichia coli strain NCTC9967 chromosome 1	8	3308334-3308430	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|231aa|up_9|NZ_LS483303.1_3300129_3300822_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_LS483303.1_3301041_3301584_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_LS483303.1_3302054_3302921_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_LS483303.1_3302922_3303135_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_LS483303.1_3303242_3303764_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_LS483303.1_3303799_3305185_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_LS483303.1_3305358_3305853_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_LS483303.1_3305855_3306578_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_LS483303.1_3306695_3307205_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_LS483303.1_3307201_3308269_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_LS483303.1_3308463_3309357_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_LS483303.1_3309353_3310169_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_LS483303.1_3310179_3311439_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_LS483303.1_3311448_3313116_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_LS483303.1_3313432_3314482_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|262aa|down_5|NZ_LS483303.1_3316526_3317312_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_6|NZ_LS483303.1_3317539_3318685_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_7|NZ_LS483303.1_3318706_3320008_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_8|NZ_LS483303.1_3320064_3321426_-	PRK08044, PRK08044, allantoinase AllB	NA|485aa|down_9|NZ_LS483303.1_3321486_3322941_-	PRK11375, PRK11375, putative allantoin permease
GCF_900474625.1_39888_E01	NZ_LS483303	Escherichia coli strain NCTC9967 chromosome 1	9	3859205-3859346	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|96aa|up_9|NZ_LS483303.1_3848196_3848484_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_LS483303.1_3848480_3849767_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_LS483303.1_3849817_3850759_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_LS483303.1_3850773_3851544_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_LS483303.1_3852016_3853531_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_LS483303.1_3853561_3854704_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_LS483303.1_3854832_3856050_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_LS483303.1_3856123_3857677_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_LS483303.1_3857785_3858571_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_LS483303.1_3858576_3859167_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_LS483303.1_3859375_3859771_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_LS483303.1_3860032_3863254_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_LS483303.1_3863271_3864420_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_LS483303.1_3864875_3865697_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_LS483303.1_3865863_3866778_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_LS483303.1_3866843_3867794_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_LS483303.1_3867795_3868245_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_LS483303.1_3868369_3868864_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_LS483303.1_3868863_3871680_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_LS483303.1_3871722_3872664_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
