assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474585.1_41315_E01	NZ_LS483304	Staphylococcus hyicus strain NCTC10350 chromosome 1	1	225769-226727	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1	csa3,cas9,cas1,WYL,DEDDh,cas3,DinG	 Type II-B,Type II-B,Type II-A, or Type II-C?,Type II-C	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC,GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC,GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	12,14,13	14	orTypeII-C?,TypeII-B,TypeII-A,TypeII-B,TypeII-C	csa3,cas9,cas1,WYL,DEDDh,cas3,DinG	NA|654aa|up_6|NZ_LS483304.1_216683_218645_+,NA|107aa|up_4|NZ_LS483304.1_219739_220060_-,NA|46aa|up_1|NZ_LS483304.1_224917_225055_+,NA|334aa|down_2|NZ_LS483304.1_231431_232433_+	NA|222aa|up_9|NZ_LS483304.1_214256_214922_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|304aa|up_8|NZ_LS483304.1_214930_215842_+	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ	NA|250aa|up_7|NZ_LS483304.1_215932_216682_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|654aa|up_6|NZ_LS483304.1_216683_218645_+	NA	NA|209aa|up_5|NZ_LS483304.1_218881_219508_-	PRK00170, PRK00170, azoreductase; Reviewed	NA|107aa|up_4|NZ_LS483304.1_219739_220060_-	NA	NA|530aa|up_3|NZ_LS483304.1_221062_222652_+	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	NA|554aa|up_2|NZ_LS483304.1_223074_224736_-	PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed	NA|46aa|up_1|NZ_LS483304.1_224917_225055_+	NA	NA|141aa|up_0|NZ_LS483304.1_225122_225545_-	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	cas9|1052aa|down_0|NZ_LS483304.1_227036_230192_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|301aa|down_1|NZ_LS483304.1_230203_231106_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|334aa|down_2|NZ_LS483304.1_231431_232433_+	NA	NA|446aa|down_3|NZ_LS483304.1_232517_233855_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|575aa|down_4|NZ_LS483304.1_234049_235774_-	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|282aa|down_5|NZ_LS483304.1_235776_236622_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|413aa|down_6|NZ_LS483304.1_236675_237914_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|214aa|down_7|NZ_LS483304.1_238278_238920_+	PRK06552, PRK06552, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|338aa|down_8|NZ_LS483304.1_238924_239938_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|468aa|down_9|NZ_LS483304.1_239953_241357_+	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
GCF_900474585.1_41315_E01	NZ_LS483304	Staphylococcus hyicus strain NCTC10350 chromosome 1	2	1141739-1141846	2	CRISPRCasFinder	no		csa3,cas9,cas1,WYL,DEDDh,cas3,DinG	Orphan	GTGGGTTCGATTCCCATCAGCCGC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,WYL,DEDDh,cas3,DinG	NA,NA|77aa|down_3|NZ_LS483304.1_1143426_1143657_-,NA|359aa|down_4|NZ_LS483304.1_1143724_1144801_-,NA|46aa|down_5|NZ_LS483304.1_1146215_1146353_+	NA|177aa|up_9|NZ_LS483304.1_1132706_1133237_-	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr	NA|119aa|up_8|NZ_LS483304.1_1133336_1133693_-	COG4980, GvpP, Gas vesicle protein [General function prediction only]	NA|143aa|up_7|NZ_LS483304.1_1133772_1134201_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|246aa|up_6|NZ_LS483304.1_1134329_1135067_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|405aa|up_5|NZ_LS483304.1_1135063_1136278_+	pfam05975, EcsB, Bacterial ABC transporter protein EcsB	NA|177aa|up_4|NZ_LS483304.1_1136325_1136856_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|348aa|up_3|NZ_LS483304.1_1137052_1138096_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|308aa|up_2|NZ_LS483304.1_1138118_1139042_+	PRK12435, PRK12435, ferrochelatase; Provisional	NA|468aa|up_1|NZ_LS483304.1_1139055_1140459_+	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|185aa|up_0|NZ_LS483304.1_1140541_1141096_+	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]	NA|51aa|down_0|NZ_LS483304.1_1142329_1142482_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|198aa|down_1|NZ_LS483304.1_1142468_1143062_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|71aa|down_2|NZ_LS483304.1_1143148_1143361_-	pfam14657, Arm-DNA-bind_4, Arm DNA-binding domain	NA|77aa|down_3|NZ_LS483304.1_1143426_1143657_-	NA	NA|359aa|down_4|NZ_LS483304.1_1143724_1144801_-	NA	NA|46aa|down_5|NZ_LS483304.1_1146215_1146353_+	NA	NA|288aa|down_6|NZ_LS483304.1_1147051_1147915_+	pfam13367, PrsW-protease, Protease prsW family	NA|284aa|down_7|NZ_LS483304.1_1148609_1149461_+	pfam13367, PrsW-protease, Protease prsW family	NA|182aa|down_8|NZ_LS483304.1_1149875_1150421_+	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|81aa|down_9|NZ_LS483304.1_1150441_1150684_+	COG5547, COG5547, Small integral membrane protein [Function unknown]
