assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474565.1_41315_B01	NZ_LS483302	Staphylococcus aureus strain NCTC8726 chromosome 1	1	230045-230129	1	CRISPRCasFinder	no		cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCGAGTTGGGGTG	26	1	1	230071-230103	NZ_LS483302.1_2310926-2310958	NA	1	1	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA|36aa|up_7|NZ_LS483302.1_218924_219032_-,NA|58aa|down_5|NZ_LS483302.1_235103_235277_-,NA|36aa|down_7|NZ_LS483302.1_236602_236710_+	NA|115aa|up_9|NZ_LS483302.1_216325_216670_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|628aa|up_8|NZ_LS483302.1_216859_218743_+	pfam08764, Coagulase, Staphylococcus aureus coagulase	NA|36aa|up_7|NZ_LS483302.1_218924_219032_-	NA	NA|395aa|up_6|NZ_LS483302.1_219329_220514_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|754aa|up_5|NZ_LS483302.1_220543_222805_-	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|404aa|up_4|NZ_LS483302.1_222991_224203_-	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|502aa|up_3|NZ_LS483302.1_224314_225820_-	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|526aa|up_2|NZ_LS483302.1_225845_227423_-	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]	NA|224aa|up_1|NZ_LS483302.1_227781_228453_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|384aa|up_0|NZ_LS483302.1_228674_229826_+	COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]	NA|184aa|down_0|NZ_LS483302.1_230310_230862_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|215aa|down_1|NZ_LS483302.1_231015_231660_+	cd05267, SDR_a6, atypical (a) SDRs, subgroup 6	NA|301aa|down_2|NZ_LS483302.1_231672_232575_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|492aa|down_3|NZ_LS483302.1_232917_234393_-	cd08490, PBP2_NikA_DppA_OppA_like_3, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|down_4|NZ_LS483302.1_234590_234947_-	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|58aa|down_5|NZ_LS483302.1_235103_235277_-	NA	NA|382aa|down_6|NZ_LS483302.1_235302_236448_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|36aa|down_7|NZ_LS483302.1_236602_236710_+	NA	NA|318aa|down_8|NZ_LS483302.1_237020_237974_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|510aa|down_9|NZ_LS483302.1_238294_239824_-	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component
GCF_900474565.1_41315_B01	NZ_LS483302	Staphylococcus aureus strain NCTC8726 chromosome 1	2	923336-923416	2	CRISPRCasFinder	no		cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	CAGCTTACAATAATGTGCAAGTTGG	25	1	4	923361-923391|923361-923391|923361-923391|923361-923391	NZ_LS483302.1_784637-784607|NZ_LS483302.1_1625857-1625827|NZ_LS483302.1_2052019-2052049|NZ_LS483302.1_2310981-2311011	NA	1	1	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_LS483302.1_912218_913715_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_LS483302.1_913707_914049_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_LS483302.1_914048_914477_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_LS483302.1_914469_916875_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_LS483302.1_917005_917389_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_LS483302.1_917452_918046_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_LS483302.1_918461_918839_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_LS483302.1_919200_920328_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_LS483302.1_920635_921826_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_LS483302.1_921934_923179_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_LS483302.1_923574_924504_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_LS483302.1_924745_926125_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_LS483302.1_926114_927320_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_LS483302.1_927670_929002_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_LS483302.1_929926_930502_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_LS483302.1_930506_931031_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_LS483302.1_931046_931622_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_LS483302.1_931781_935258_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_LS483302.1_935258_938912_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_LS483302.1_939077_939980_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_900474565.1_41315_B01	NZ_LS483302	Staphylococcus aureus strain NCTC8726 chromosome 1	3	1731337-1731417	3	CRISPRCasFinder	no		cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAAACAATGCAAGTTGGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|35aa|down_4|NZ_LS483302.1_1735712_1735817_-	NA|423aa|up_9|NZ_LS483302.1_1715814_1717083_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_LS483302.1_1717131_1718253_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_LS483302.1_1718600_1719962_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_LS483302.1_1720309_1722067_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_LS483302.1_1722088_1723057_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_LS483302.1_1723325_1724270_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_LS483302.1_1724269_1725127_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_LS483302.1_1725321_1726551_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_LS483302.1_1727000_1730198_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_LS483302.1_1730218_1731160_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_LS483302.1_1731468_1732767_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_LS483302.1_1732971_1733385_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_LS483302.1_1733715_1734405_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_LS483302.1_1734579_1735635_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|35aa|down_4|NZ_LS483302.1_1735712_1735817_-	NA	NA|373aa|down_5|NZ_LS483302.1_1735944_1737063_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_LS483302.1_1737203_1737704_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_LS483302.1_1737948_1739151_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_LS483302.1_1739238_1740186_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_LS483302.1_1740308_1740803_-	PRK00522, tpx, thiol peroxidase
GCF_900474565.1_41315_B01	NZ_LS483302	Staphylococcus aureus strain NCTC8726 chromosome 1	4	1821897-1821985	4	CRISPRCasFinder	no	csa3	cas3,casR,DEDDh,DinG,csa3,WYL	Type I-A	CAATGCGCGTTGGGGTACGGGGCCCCAACA	30	1	1	1821927-1821955	NZ_LS483302.1_1422115-1422087	NA	1	1	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA|75aa|up_5|NZ_LS483302.1_1817991_1818216_-,NA|148aa|up_2|NZ_LS483302.1_1819427_1819871_-,NA|101aa|down_1|NZ_LS483302.1_1823121_1823424_+	NA|501aa|up_9|NZ_LS483302.1_1813022_1814525_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_8|NZ_LS483302.1_1815168_1815483_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_7|NZ_LS483302.1_1815482_1816775_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_6|NZ_LS483302.1_1816861_1817716_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_5|NZ_LS483302.1_1817991_1818216_-	NA	NA|157aa|up_4|NZ_LS483302.1_1818414_1818885_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|148aa|up_3|NZ_LS483302.1_1818997_1819441_+	pfam06338, ComK, ComK protein	NA|148aa|up_2|NZ_LS483302.1_1819427_1819871_-	NA	NA|212aa|up_1|NZ_LS483302.1_1820167_1820803_+	pfam02517, Abi, CAAX protease self-immunity	NA|207aa|up_0|NZ_LS483302.1_1820969_1821590_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_0|NZ_LS483302.1_1822149_1822863_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_1|NZ_LS483302.1_1823121_1823424_+	NA	NA|122aa|down_2|NZ_LS483302.1_1823678_1824044_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_3|NZ_LS483302.1_1824040_1824394_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_4|NZ_LS483302.1_1824642_1825476_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|303aa|down_5|NZ_LS483302.1_1825687_1826596_-	pfam08378, NERD, Nuclease-related domain	NA|398aa|down_6|NZ_LS483302.1_1826720_1827914_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|531aa|down_7|NZ_LS483302.1_1828284_1829877_+	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|249aa|down_8|NZ_LS483302.1_1830171_1830918_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|158aa|down_9|NZ_LS483302.1_1830922_1831396_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD
GCF_900474565.1_41315_B01	NZ_LS483302	Staphylococcus aureus strain NCTC8726 chromosome 1	5	2238081-2238219	5	CRISPRCasFinder	no		cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	51	1	1	2238132-2238168	NZ_LS483302.1_2238043-2238079	NA	1	1	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA|93aa|up_7|NZ_LS483302.1_2230122_2230401_+,NA|61aa|up_1|NZ_LS483302.1_2236962_2237145_-,NA|60aa|up_0|NZ_LS483302.1_2237783_2237963_-,NA	NA|807aa|up_9|NZ_LS483302.1_2225777_2228198_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_8|NZ_LS483302.1_2228396_2229251_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|93aa|up_7|NZ_LS483302.1_2230122_2230401_+	NA	NA|506aa|up_6|NZ_LS483302.1_2230410_2231928_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|272aa|up_5|NZ_LS483302.1_2232159_2232975_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_LS483302.1_2233269_2233695_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_LS483302.1_2234086_2234791_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_LS483302.1_2234827_2236492_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_LS483302.1_2236962_2237145_-	NA	NA|60aa|up_0|NZ_LS483302.1_2237783_2237963_-	NA	NA|133aa|down_0|NZ_LS483302.1_2239996_2240395_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_1|NZ_LS483302.1_2240408_2240846_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_2|NZ_LS483302.1_2241085_2241889_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_3|NZ_LS483302.1_2241893_2242700_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_4|NZ_LS483302.1_2242689_2243550_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_5|NZ_LS483302.1_2243546_2244356_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_6|NZ_LS483302.1_2244893_2245262_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_7|NZ_LS483302.1_2245278_2246223_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_8|NZ_LS483302.1_2246297_2246687_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|122aa|down_9|NZ_LS483302.1_2246710_2247076_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated
