The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	250959	321727	2702202	protease,holin,plate,integrase	Staphylococcus_phage(33.33%)	58	247703:247721	328894:328912
247703:247721	attL	GAAGAATTTAAAAATTTAA	NA	NA	NA	NA
WP_001792906.1|250959_251403_+|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
WP_000607067.1|251395_252097_+|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
WP_000922329.1|252204_252909_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000066923.1|253057_253849_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_042852398.1|253864_255301_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.2	9.1e-29
WP_000031270.1|255819_256581_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_042852399.1|256599_256734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000182754.1|256830_257745_-	ribokinase	NA	NA	NA	NA	NA
WP_000747873.1|257772_258177_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_000029197.1|258191_259073_-	ribose transporter RbsU	NA	NA	NA	NA	NA
WP_000757873.1|259304_260303_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_045157571.1|260683_261073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001044502.1|261201_262578_-	MFS transporter	NA	NA	NA	NA	NA
WP_000337384.1|262811_263804_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000736801.1|264123_265074_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.2e-16
WP_000570068.1|265125_265785_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	4.5e-23
WP_111725075.1|265798_266719_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000848766.1|266715_267882_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000038507.1|267949_269473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045157572.1|270428_270986_+	DUF5080 family protein	NA	NA	NA	NA	NA
WP_001240826.1|272303_272597_+	WXG100 family type VII secretion effector EsxA	NA	NA	NA	NA	NA
WP_000728969.1|272679_275709_+	type VII secretion protein EsaA	NA	NA	NA	NA	NA
WP_001071606.1|276137_276380_+	type VII secretion protein EsaB	NA	NA	NA	NA	NA
WP_000240338.1|276392_277727_+	type VII secretion protein EssB	NA	NA	NA	NA	NA
WP_000549269.1|277748_282188_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	24.3	1.4e-27
WP_001010292.1|282217_282610_+	type VII secretion substrate EsaC	NA	NA	NA	NA	NA
WP_000509673.1|282625_282940_+	WXG100 family type VII secretion effector EsxB	NA	NA	NA	NA	NA
WP_000655883.1|282939_283614_+	DUF5081 family protein	NA	NA	NA	NA	NA
WP_000175721.1|283613_283931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001008478.1|285795_286287_+	TIGR01741 family protein	NA	NA	NA	NA	NA
WP_000208411.1|286488_287172_+	DUF5079 family protein	NA	NA	NA	NA	NA
WP_000141999.1|288146_288647_+	TIGR01741 family protein	NA	NA	NA	NA	NA
WP_000142118.1|288657_289158_+	TIGR01741 family protein	NA	NA	NA	NA	NA
WP_000142083.1|289168_289657_+	TIGR01741 family protein	NA	NA	NA	NA	NA
WP_000822164.1|290262_290637_+	DUF4467 domain-containing protein	NA	NA	NA	NA	NA
WP_045157574.1|291435_292257_-	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
WP_000745092.1|292495_293803_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_001033892.1|294385_295276_+	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA	NA
WP_000477935.1|295524_296574_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000911022.1|296586_297264_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	3.5e-31
WP_000364864.1|297471_298503_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_001283967.1|298845_299964_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000002078.1|299938_300862_+	pseudouridine-5'-phosphate glycosidase	NA	NA	NA	NA	NA
WP_001022976.1|300872_302093_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA	NA
WP_000665720.1|302197_303730_-	sodium:solute symporter	NA	NA	NA	NA	NA
WP_001030748.1|303769_304651_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
WP_000291433.1|304809_305670_+	ROK family protein	NA	NA	NA	NA	NA
WP_000667382.1|305946_306747_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000936728.1|306886_307555_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_001077701.1|307684_308998_-	YjiH family protein	NA	NA	NA	NA	NA
WP_111725077.1|311428_312634_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	97.5	8.3e-217
WP_000385073.1|312733_313387_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000067151.1|314082_315549_+|plate	BppU family phage baseplate upper protein	plate	A0A0K1LKC9	Staphylococcus_phage	99.4	2.2e-272
WP_001166605.1|315548_315938_+	DUF2977 domain-containing protein	NA	Q4ZCZ7	Staphylococcus_virus	94.6	7.1e-61
WP_000916016.1|315930_316095_+	XkdX family protein	NA	M9QX31	Staphylococcus_phage	94.4	2.1e-22
WP_000072567.1|317032_318265_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	6.8e-49
WP_000448764.1|318316_318619_+|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	94.0	3.8e-46
WP_000448196.1|321139_321727_+	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	99.5	7.1e-97
328894:328912	attR	GAAGAATTTAAAAATTTAA	NA	NA	NA	NA
>prophage 2
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	385186	403829	2702202	terminase,coat,integrase	Staphylococcus_phage(65.0%)	25	388205:388264	404095:404168
WP_000264071.1|385186_386653_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424972.1|386677_388219_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.6e-23
388205:388264	attL	ATTGAGTGGGAATAATTATATATAGCAAATGATAGGCTGGAGTTACCGTAATTACGCGGT	NA	NA	NA	NA
WP_000592971.1|388312_389449_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	1.0e-75
WP_000819104.1|389532_390318_-	helix-turn-helix transcriptional regulator	NA	A0A1S5S8T5	Streptococcus_phage	34.1	7.5e-09
WP_000494396.1|390434_390662_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000080597.1|390707_390968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000773831.1|391014_391170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|391154_391358_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403836.1|391359_391743_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	97.6	1.1e-63
WP_001103956.1|391743_392061_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	9.3e-19
WP_001002694.1|392124_392994_+	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	94.5	4.2e-162
WP_000447453.1|393007_394717_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	96.1	0.0e+00
WP_000356932.1|395047_395428_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	98.4	1.2e-68
WP_111725079.1|395424_396066_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.0	2.1e-110
WP_000443639.1|396412_396754_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	6.4e-58
WP_000846288.1|396765_397344_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	37.4	2.2e-26
WP_000853272.1|397361_397580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771381.1|397630_398158_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	4.1e-88
WP_078062700.1|398289_398502_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	91.4	1.3e-29
WP_001293068.1|398498_399068_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	1.7e-100
WP_001035596.1|399222_399927_-	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_025175769.1|400336_400738_+	hypothetical protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	62.7	2.0e-26
WP_000813312.1|400855_401368_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	99.4	1.9e-69
WP_001043550.1|402139_402940_+	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	44.2	2.8e-51
WP_000746599.1|403106_403829_-	staphylococcal enterotoxin type L	NA	A0A1X9H080	Staphylococcus_phage	34.9	2.1e-26
404095:404168	attR	ATTGAGTGGGAATAATTATATATAGCAAATGATAGGCTGGAGTTACCGTAATTACGCGGTTTCCAGCCTTTTTT	NA	NA	NA	NA
>prophage 3
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	724117	731937	2702202		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|724117_725173_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|725172_725859_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|725833_726307_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|726648_727089_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|727368_727953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|728051_728765_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941335.1|728768_729188_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	4.9e-07
WP_000446724.1|729189_729858_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604519.1|730208_730802_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
WP_001217803.1|730785_731937_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.3	1.6e-23
>prophage 4
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	743908	758366	2702202		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663036.1|743908_744967_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
WP_000197262.1|745124_745667_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429019.1|746272_747190_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
WP_000193751.1|747471_748977_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|749316_749817_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|749836_750703_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|751503_751902_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855507.1|751864_753970_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|754087_755059_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_031901244.1|755499_755655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011382221.1|755693_756665_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	1.6e-138
WP_045158157.1|756651_757608_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	5.5e-06
WP_000616870.1|757604_758366_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 5
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	940120	984137	2702202	bacteriocin,holin,transposase,tRNA,protease	Streptococcus_phage(33.33%)	43	NA	NA
WP_103150204.1|940120_941110_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|941404_941800_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217733.1|942170_942890_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959274.1|943009_943996_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082719.1|944043_945852_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	2.7e-46
WP_000896697.1|946311_947118_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|947140_947506_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224617.1|947609_948203_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242108.1|948388_948736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|948752_949388_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|949404_950214_+	NAD kinase	NA	NA	NA	NA	NA
WP_045157818.1|950210_951065_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|951085_952471_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395144.1|952480_954325_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_045157819.1|954602_955373_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|955566_956652_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570696.1|956993_958562_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889173.1|958704_959463_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|959656_960166_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154230.1|960278_961469_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258639.1|961446_962622_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340126.1|963054_964539_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001798480.1|964519_964780_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049957.1|964779_966342_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|966643_967447_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_078062650.1|967665_969990_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.1	3.1e-10
WP_000021871.1|970006_971365_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414188.1|971503_973015_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000283455.1|973509_974079_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|974288_974507_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|974587_975574_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|975772_975949_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|975963_976566_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|976866_976944_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_042852647.1|977482_977584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078062708.1|977593_977866_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870792.1|977908_979873_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668625.1|979875_980199_+	YxeA family protein	NA	NA	NA	NA	NA
WP_042852651.1|980195_980834_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.2	2.2e-19
WP_001795266.1|980921_981212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410749.1|981544_981832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000758644.1|981837_983319_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_045157849.1|983462_984137_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	92.0	4.4e-119
>prophage 6
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	1014695	1023168	2702202		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|1014695_1015178_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010402.1|1015164_1016289_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_045157871.1|1016292_1016997_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	40.8	1.2e-45
WP_000848350.1|1016996_1017260_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666795.1|1017261_1017933_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_045157872.1|1017925_1020115_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.5	3.9e-140
WP_000483725.1|1020093_1021578_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.3	7.9e-44
WP_000030809.1|1021570_1022599_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.0e-61
WP_000238676.1|1022601_1023168_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	1.4e-28
>prophage 7
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	1549403	1557715	2702202	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213911.1|1549403_1550189_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1550314_1551205_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_111725115.1|1551214_1552561_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	9.1e-55
WP_000683918.1|1552674_1553775_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	8.0e-09
WP_000624573.1|1553777_1554455_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1554585_1555692_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217256.1|1555915_1557715_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 8
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	1626816	1635859	2702202	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1626816_1627335_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594979.1|1627356_1629630_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	4.7e-64
WP_000749788.1|1629832_1632112_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1632386_1632647_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112041.1|1632665_1633805_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	2.7e-84
WP_111725119.1|1633827_1634853_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005765.1|1634854_1635859_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	1771010	1804893	2702202		Staphylococcus_phage(93.55%)	37	NA	NA
WP_000526539.1|1771010_1771964_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764416.1|1771960_1772524_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	5.4e-102
WP_000757543.1|1772643_1773045_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_111725123.1|1773616_1774444_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_078062663.1|1774446_1774566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196359.1|1774677_1775679_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	3.4e-184
WP_001008551.1|1775800_1776265_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159023.1|1776277_1777459_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	3.3e-226
WP_000493886.1|1777469_1778102_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_000077339.1|1778108_1779152_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.0e-194
WP_001261663.1|1779632_1781135_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221190.1|1781656_1781971_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_045158757.1|1781970_1783263_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	6.3e-223
WP_000163238.1|1783280_1783676_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	97.7	2.6e-71
WP_001032833.1|1784076_1784931_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1785206_1785431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671046.1|1785629_1786100_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	2.2e-80
WP_001153740.1|1786212_1786656_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1786642_1787086_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001096497.1|1788442_1789156_-	transaldolase	NA	M1PR54	Cyanophage	34.8	2.1e-18
WP_000091445.1|1789413_1789716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200547.1|1789971_1790337_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	97.5	8.1e-59
WP_000623471.1|1790333_1790687_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453318.1|1790935_1791769_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.7e-157
WP_000366162.1|1791979_1792888_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	1.3e-137
WP_000933822.1|1793012_1794206_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109916.1|1794576_1796169_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_078062717.1|1796465_1797212_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	2.3e-140
WP_000672005.1|1797216_1797690_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	4.0e-82
WP_000718107.1|1797755_1798013_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778533.1|1798009_1799011_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.4	2.2e-183
WP_000348355.1|1799015_1800494_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	1.8e-282
WP_078062664.1|1801409_1802060_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	64.8	1.0e-32
WP_000070639.1|1802140_1803136_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	95.6	1.5e-70
WP_000669047.1|1803211_1803838_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.8	3.1e-90
WP_000627544.1|1803878_1804220_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	2.3e-55
WP_000414217.1|1804320_1804893_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
>prophage 10
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	1817032	1840313	2702202	protease	Staphylococcus_phage(94.44%)	20	NA	NA
WP_000028674.1|1817032_1818589_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	3.7e-286
WP_001038721.1|1818951_1819671_-|protease	serine protease	protease	A0A2H4PQP1	Staphylococcus_phage	94.1	9.9e-125
WP_001038768.1|1819839_1820556_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	60.5	2.5e-80
WP_001038860.1|1820680_1821400_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	91.6	5.1e-121
WP_001039452.1|1821457_1822180_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	95.4	1.4e-126
WP_001092760.1|1823963_1824542_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	59.6	1.2e-48
WP_000469595.1|1825015_1825234_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	81.9	1.4e-26
WP_158297484.1|1825268_1825418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000581547.1|1825710_1826472_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	95.7	2.5e-126
WP_001096794.1|1826468_1827161_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	97.0	5.4e-120
WP_000849075.1|1827183_1828557_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	94.3	2.8e-245
WP_000517786.1|1828566_1829085_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	97.7	1.9e-93
WP_000130813.1|1829100_1830345_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	87.2	9.5e-208
WP_045158631.1|1830337_1833331_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	92.1	0.0e+00
WP_000432510.1|1833395_1833539_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	100.0	3.8e-20
WP_000416758.1|1834272_1834416_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	78.7	2.0e-13
WP_000782469.1|1834655_1835639_-	leukocidin/hemolysin toxin family protein	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	6.8e-185
WP_000473600.1|1835640_1836576_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	99.3	2.5e-173
WP_000595639.1|1838202_1838799_+	membrane protein	NA	NA	NA	NA	NA
WP_000711491.1|1838966_1840313_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	50.7	1.6e-64
>prophage 11
NZ_LS483300	Staphylococcus aureus strain NCTC7485 chromosome 1	2702202	1988880	2001132	2702202	coat,integrase	Staphylococcus_phage(81.25%)	19	1982728:1982747	1999154:1999173
1982728:1982747	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_078062700.1|1988880_1989093_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	91.4	1.3e-29
WP_000771381.1|1989224_1989752_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	4.1e-88
WP_000853272.1|1989802_1990021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846288.1|1990038_1990617_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	37.4	2.2e-26
WP_001190614.1|1990628_1990970_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_001047699.1|1991486_1992128_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.0	2.1e-110
WP_045158982.1|1992124_1992505_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	97.6	4.5e-68
WP_000447477.1|1992813_1994523_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.4	5.9e-301
WP_001002697.1|1994536_1995406_-	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	95.2	3.4e-164
WP_001103950.1|1995472_1995790_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	53.4	7.1e-19
WP_001038251.1|1995790_1996150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001058497.1|1996151_1996364_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	72.1	2.4e-18
WP_000708436.1|1996356_1996503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481970.1|1996499_1996817_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.7e-49
WP_000794657.1|1996820_1997027_-	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	71.6	6.4e-21
WP_000672427.1|1997178_1997901_+	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	38.2	3.3e-35
WP_000179355.1|1997914_1999087_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	96.2	1.7e-214
WP_000240641.1|1999155_2000772_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.5	1.3e-156
1999154:1999173	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|2000847_2001132_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
