assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	1	1044431-1044826	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA|47aa|up_1|NZ_LS483297.1_1043140_1043281_-,NA	NA|434aa|up_9|NZ_LS483297.1_1033837_1035139_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_LS483297.1_1035186_1037421_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_LS483297.1_1037498_1037747_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_LS483297.1_1037746_1038082_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_LS483297.1_1038152_1038944_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_LS483297.1_1039171_1040809_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_LS483297.1_1040896_1042195_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_LS483297.1_1042254_1043127_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_LS483297.1_1043140_1043281_-	NA	NA|224aa|up_0|NZ_LS483297.1_1043419_1044091_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_LS483297.1_1045464_1046943_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_LS483297.1_1046969_1048247_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_LS483297.1_1048566_1049352_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_LS483297.1_1049421_1050876_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_LS483297.1_1050897_1052307_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_LS483297.1_1052284_1053064_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_LS483297.1_1053060_1053921_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_LS483297.1_1054068_1054644_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_LS483297.1_1054660_1054921_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_LS483297.1_1054911_1056183_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	2	1063061-1063455	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,6	6	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|287aa|up_9|NZ_LS483297.1_1053060_1053921_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_LS483297.1_1054068_1054644_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_LS483297.1_1054660_1054921_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_LS483297.1_1054911_1056183_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_5|NZ_LS483297.1_1056260_1056623_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_LS483297.1_1056941_1058741_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_LS483297.1_1058740_1060453_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_LS483297.1_1060526_1061261_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_LS483297.1_1061525_1061678_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_LS483297.1_1061870_1062983_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_LS483297.1_1063475_1064513_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_LS483297.1_1064764_1065673_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_LS483297.1_1065674_1067102_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_LS483297.1_1067101_1067707_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_LS483297.1_1067756_1068080_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_LS483297.1_1068273_1068585_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_LS483297.1_1068603_1069314_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_LS483297.1_1069313_1069793_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_LS483297.1_1069789_1070839_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_LS483297.1_1070819_1071581_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	3	1609637-1609754	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|62aa|up_9|NZ_LS483297.1_1598922_1599108_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_LS483297.1_1599120_1600020_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_LS483297.1_1600212_1601403_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_LS483297.1_1601399_1602659_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_LS483297.1_1602648_1604277_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_LS483297.1_1604549_1605908_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_LS483297.1_1605912_1606989_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_LS483297.1_1607451_1608102_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_LS483297.1_1608155_1608410_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_LS483297.1_1608409_1609540_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_LS483297.1_1609773_1612059_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|241aa|down_1|NZ_LS483297.1_1616635_1617358_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_2|NZ_LS483297.1_1617504_1620132_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_3|NZ_LS483297.1_1620280_1621969_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_4|NZ_LS483297.1_1621965_1622589_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1463aa|down_5|NZ_LS483297.1_1622732_1627121_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|259aa|down_6|NZ_LS483297.1_1628776_1629553_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_7|NZ_LS483297.1_1629626_1630811_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_8|NZ_LS483297.1_1630841_1632164_-	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|217aa|down_9|NZ_LS483297.1_1632160_1632811_-	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	4	2195881-2196004	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA|30aa|down_7|NZ_LS483297.1_2204900_2204990_+	NA|471aa|up_9|NZ_LS483297.1_2185335_2186748_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_LS483297.1_2187304_2187514_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_LS483297.1_2187968_2188595_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_LS483297.1_2188615_2190718_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_LS483297.1_2190730_2191369_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_LS483297.1_2191432_2192101_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_LS483297.1_2192097_2192883_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_LS483297.1_2192886_2193699_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_LS483297.1_2193710_2195315_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_LS483297.1_2195440_2195746_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_LS483297.1_2196318_2197575_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_LS483297.1_2197615_2198989_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_LS483297.1_2199203_2199845_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_LS483297.1_2199884_2201033_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_LS483297.1_2201323_2202535_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_LS483297.1_2202647_2203580_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_LS483297.1_2203576_2204602_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_LS483297.1_2204900_2204990_+	NA	NA|390aa|down_8|NZ_LS483297.1_2205155_2206325_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_LS483297.1_2206559_2207141_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	5	2626039-2626126	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	CTGCTGCTGCAGGCCGGCGATGGTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA|102aa|up_9|NZ_LS483297.1_2618748_2619054_-,NA|192aa|up_8|NZ_LS483297.1_2619053_2619629_-,NA|142aa|up_6|NZ_LS483297.1_2621788_2622214_-,NA|181aa|up_3|NZ_LS483297.1_2624163_2624706_-,NA|129aa|up_2|NZ_LS483297.1_2624698_2625085_-,NA|169aa|up_1|NZ_LS483297.1_2625084_2625591_-,NA|173aa|down_1|NZ_LS483297.1_2627322_2627841_-,NA|66aa|down_3|NZ_LS483297.1_2629273_2629471_+,NA|87aa|down_8|NZ_LS483297.1_2633679_2633940_+,NA|131aa|down_9|NZ_LS483297.1_2634587_2634980_-	NA|102aa|up_9|NZ_LS483297.1_2618748_2619054_-	NA	NA|192aa|up_8|NZ_LS483297.1_2619053_2619629_-	NA	NA|660aa|up_7|NZ_LS483297.1_2619628_2621608_-	PHA02564, V, virion protein; Provisional	NA|142aa|up_6|NZ_LS483297.1_2621788_2622214_-	NA	NA|147aa|up_5|NZ_LS483297.1_2622217_2622658_-	pfam11681, DUF3277, Protein of unknown function (DUF3277)	NA|497aa|up_4|NZ_LS483297.1_2622669_2624160_-	pfam11863, DUF3383, Protein of unknown function (DUF3383)	NA|181aa|up_3|NZ_LS483297.1_2624163_2624706_-	NA	NA|129aa|up_2|NZ_LS483297.1_2624698_2625085_-	NA	NA|169aa|up_1|NZ_LS483297.1_2625084_2625591_-	NA	NA|136aa|up_0|NZ_LS483297.1_2625587_2625995_-	pfam13262, DUF4054, Protein of unknown function (DUF4054)	NA|315aa|down_0|NZ_LS483297.1_2626366_2627311_-	pfam09950, DUF2184, Uncharacterized protein conserved in bacteria (DUF2184)	NA|173aa|down_1|NZ_LS483297.1_2627322_2627841_-	NA	NA|418aa|down_2|NZ_LS483297.1_2627852_2629106_-	pfam09979, DUF2213, Uncharacterized protein conserved in bacteria (DUF2213)	NA|66aa|down_3|NZ_LS483297.1_2629273_2629471_+	NA	NA|178aa|down_4|NZ_LS483297.1_2629508_2630042_-	pfam04233, Phage_Mu_F, Phage Mu protein F like protein	NA|493aa|down_5|NZ_LS483297.1_2630103_2631582_-	pfam06381, DUF1073, Protein of unknown function (DUF1073)	NA|402aa|down_6|NZ_LS483297.1_2631594_2632800_-	TIGR01547, Uncharacterized_protein_YqaT, phage terminase, large subunit, PBSX family	NA|236aa|down_7|NZ_LS483297.1_2632835_2633543_-	pfam03592, Terminase_2, Terminase small subunit	NA|87aa|down_8|NZ_LS483297.1_2633679_2633940_+	NA	NA|131aa|down_9|NZ_LS483297.1_2634587_2634980_-	NA
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	6	2871150-2871241	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA|70aa|up_9|NZ_LS483297.1_2860225_2860435_-,NA	NA|70aa|up_9|NZ_LS483297.1_2860225_2860435_-	NA	NA|1321aa|up_8|NZ_LS483297.1_2860489_2864452_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_LS483297.1_2864491_2865130_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_LS483297.1_2865417_2866509_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_LS483297.1_2866508_2867201_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_LS483297.1_2867212_2867599_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_LS483297.1_2867606_2868407_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_LS483297.1_2868416_2869007_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_LS483297.1_2869017_2869512_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_LS483297.1_2869532_2870861_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_LS483297.1_2871664_2872261_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_LS483297.1_2872281_2872509_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_LS483297.1_2872546_2873788_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_LS483297.1_2874080_2875337_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_LS483297.1_2875597_2876518_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_LS483297.1_2876517_2876823_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_LS483297.1_2876974_2877574_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_LS483297.1_2877570_2880117_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_LS483297.1_2880116_2881289_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_LS483297.1_2881418_2882111_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	7	3013523-3013728	7,3,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|431aa|up_9|NZ_LS483297.1_2998646_2999939_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_LS483297.1_3000029_3001373_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_LS483297.1_3001383_3001995_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_LS483297.1_3002149_3006139_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_LS483297.1_3006273_3006768_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_LS483297.1_3007312_3008278_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_LS483297.1_3008400_3010167_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_LS483297.1_3010167_3011889_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_LS483297.1_3011930_3012635_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_LS483297.1_3012919_3013138_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_LS483297.1_3013938_3016215_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_LS483297.1_3016245_3016566_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_LS483297.1_3016888_3017113_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_LS483297.1_3017185_3019132_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_LS483297.1_3019128_3020244_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_LS483297.1_3020394_3021351_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_LS483297.1_3021347_3023006_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_LS483297.1_3023430_3024126_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_LS483297.1_3024620_3025520_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_LS483297.1_3025663_3027316_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	8	3141585-3141729	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA|94aa|up_6|NZ_LS483297.1_3136970_3137252_+,NA|201aa|up_4|NZ_LS483297.1_3137782_3138385_-,NA|56aa|up_3|NZ_LS483297.1_3138627_3138795_+,NA	NA|195aa|up_9|NZ_LS483297.1_3134972_3135557_-	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK	NA|378aa|up_8|NZ_LS483297.1_3135556_3136690_-	pfam07484, Collar, Phage Tail Collar Domain	NA|64aa|up_7|NZ_LS483297.1_3136768_3136960_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_6|NZ_LS483297.1_3136970_3137252_+	NA	NA|74aa|up_5|NZ_LS483297.1_3137350_3137572_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_4|NZ_LS483297.1_3137782_3138385_-	NA	NA|56aa|up_3|NZ_LS483297.1_3138627_3138795_+	NA	NA|73aa|up_2|NZ_LS483297.1_3138834_3139053_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_LS483297.1_3139030_3140101_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_LS483297.1_3140235_3141519_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_LS483297.1_3141752_3144014_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_LS483297.1_3144196_3145630_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_LS483297.1_3145705_3146758_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_LS483297.1_3146941_3147895_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_LS483297.1_3147935_3148931_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_LS483297.1_3149085_3149904_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_LS483297.1_3149904_3150963_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_LS483297.1_3150965_3151655_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_LS483297.1_3151654_3152428_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_LS483297.1_3152594_3152744_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	9	3381841-3381937	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|231aa|up_9|NZ_LS483297.1_3373636_3374329_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_LS483297.1_3374548_3375091_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_LS483297.1_3375561_3376428_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_LS483297.1_3376429_3376642_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_LS483297.1_3376749_3377271_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_LS483297.1_3377306_3378692_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_LS483297.1_3378865_3379360_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_LS483297.1_3379362_3380085_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_LS483297.1_3380202_3380712_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_LS483297.1_3380708_3381776_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_LS483297.1_3381970_3382864_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_LS483297.1_3382860_3383676_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_LS483297.1_3383686_3384946_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_LS483297.1_3384955_3386623_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_LS483297.1_3386939_3387989_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_LS483297.1_3388010_3389246_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_LS483297.1_3389256_3390042_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_LS483297.1_3390269_3391415_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_LS483297.1_3391436_3392738_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_LS483297.1_3392794_3394156_-	PRK08044, PRK08044, allantoinase AllB
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	10	3524355-3524499	10	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA|28aa|down_2|NZ_LS483297.1_3526544_3526628_-	NA|357aa|up_9|NZ_LS483297.1_3509493_3510564_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_LS483297.1_3510656_3511238_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_LS483297.1_3511242_3513060_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_LS483297.1_3513215_3514589_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_LS483297.1_3514664_3515984_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_LS483297.1_3516390_3517686_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_LS483297.1_3517743_3518433_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_LS483297.1_3518622_3519825_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_LS483297.1_3519821_3522968_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_LS483297.1_3523093_3524278_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_LS483297.1_3524522_3525431_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_LS483297.1_3525555_3526467_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_LS483297.1_3526544_3526628_-	NA	NA|95aa|down_3|NZ_LS483297.1_3527113_3527398_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_LS483297.1_3527469_3528147_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_LS483297.1_3528404_3528596_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_LS483297.1_3528645_3529170_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_LS483297.1_3529346_3529811_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_LS483297.1_3529930_3530740_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_LS483297.1_3530756_3531872_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	11	3713527-3713623	11	CRISPRCasFinder	no	RT	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|153aa|up_9|NZ_LS483297.1_3705405_3705864_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_8|NZ_LS483297.1_3706124_3707582_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|186aa|up_7|NZ_LS483297.1_3707638_3708196_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|89aa|up_6|NZ_LS483297.1_3708107_3708374_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_5|NZ_LS483297.1_3708607_3709060_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_LS483297.1_3709069_3709468_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_LS483297.1_3709470_3709764_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_LS483297.1_3709815_3710871_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_LS483297.1_3710941_3711727_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_LS483297.1_3711671_3713411_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_LS483297.1_3713626_3714124_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_LS483297.1_3714299_3715073_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_LS483297.1_3715258_3715519_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|247aa|down_3|NZ_LS483297.1_3715946_3716687_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_4|NZ_LS483297.1_3716657_3717425_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_5|NZ_LS483297.1_3717630_3718209_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_6|NZ_LS483297.1_3718448_3720893_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_7|NZ_LS483297.1_3720935_3721409_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_8|NZ_LS483297.1_3721562_3722333_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|379aa|down_9|NZ_LS483297.1_3722373_3723510_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated
GCF_900474495.1_38344_F01	NZ_LS483297	Escherichia coli strain NCTC11023 chromosome 1	12	3937452-3937593	12	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|96aa|up_9|NZ_LS483297.1_3926443_3926731_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_LS483297.1_3926727_3928014_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_LS483297.1_3928064_3929006_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_LS483297.1_3929020_3929791_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_LS483297.1_3930263_3931778_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_LS483297.1_3931808_3932951_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_LS483297.1_3933079_3934297_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_LS483297.1_3934370_3935924_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_LS483297.1_3936032_3936818_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_LS483297.1_3936823_3937414_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_LS483297.1_3937622_3938018_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_LS483297.1_3938279_3941501_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_LS483297.1_3941518_3942667_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_LS483297.1_3943122_3943944_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|317aa|down_4|NZ_LS483297.1_3945090_3946041_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_5|NZ_LS483297.1_3946042_3946492_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_6|NZ_LS483297.1_3946616_3947111_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_7|NZ_LS483297.1_3947110_3949927_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_8|NZ_LS483297.1_3949969_3950911_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|73aa|down_9|NZ_LS483297.1_3950918_3951137_-	pfam10837, DUF2575, Protein of unknown function (DUF2575)
