assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900327275.1_Ka	NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	1	280424-280506	1	CRISPRCasFinder	no		RT,DEDDh	Orphan	GATGAAGGTATAGAGATTGGTGA	23	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh	NA|48aa|up_7|NZ_LS398548.1_267865_268009_+,NA|342aa|down_0|NZ_LS398548.1_281902_282928_+,NA|194aa|down_1|NZ_LS398548.1_283454_284036_+	NA|339aa|up_9|NZ_LS398548.1_265108_266125_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|302aa|up_8|NZ_LS398548.1_266121_267027_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]	NA|48aa|up_7|NZ_LS398548.1_267865_268009_+	NA	NA|789aa|up_6|NZ_LS398548.1_268346_270713_-	PRK06599, PRK06599, DNA topoisomerase I; Validated	NA|319aa|up_5|NZ_LS398548.1_270805_271762_-	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins	NA|165aa|up_4|NZ_LS398548.1_271981_272476_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|844aa|up_3|NZ_LS398548.1_272644_275176_+	pfam13502, AsmA_2, AsmA-like C-terminal region	NA|308aa|up_2|NZ_LS398548.1_275473_276397_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|182aa|up_1|NZ_LS398548.1_276393_276939_-	PRK00150, def, peptide deformylase; Reviewed	NA|365aa|up_0|NZ_LS398548.1_278515_279610_+	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|342aa|down_0|NZ_LS398548.1_281902_282928_+	NA	NA|194aa|down_1|NZ_LS398548.1_283454_284036_+	NA	NA|518aa|down_2|NZ_LS398548.1_284072_285626_-	PRK10788, PRK10788, periplasmic folding chaperone; Provisional	NA|250aa|down_3|NZ_LS398548.1_285706_286456_+	cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate	NA|98aa|down_4|NZ_LS398548.1_286461_286755_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|527aa|down_5|NZ_LS398548.1_287474_289055_-	PRK00750, lysK, lysyl-tRNA synthetase; Reviewed	NA|183aa|down_6|NZ_LS398548.1_289193_289742_+	pfam02600, DsbB, Disulfide bond formation protein DsbB	NA|182aa|down_7|NZ_LS398548.1_289704_290250_+	cd01042, DMQH, Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain	NA|231aa|down_8|NZ_LS398548.1_290326_291019_+	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein	NA|258aa|down_9|NZ_LS398548.1_291070_291844_+	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]
GCF_900327275.1_Ka	NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2	318163-318242	2	CRISPRCasFinder	no		RT,DEDDh	Orphan	ATATCAAGAAGCAATAGAGAATTT	24	1	1	318187-318218	NZ_LS398548.1_487221-487190	NA	1	1	Orphan	RT,DEDDh	NA|47aa|up_4|NZ_LS398548.1_315826_315967_-,NA|96aa|up_3|NZ_LS398548.1_316218_316506_-,NA|109aa|down_4|NZ_LS398548.1_328420_328747_-,NA|73aa|down_5|NZ_LS398548.1_328813_329032_-,NA|57aa|down_7|NZ_LS398548.1_329550_329721_-,NA|100aa|down_8|NZ_LS398548.1_330625_330925_+	NA|416aa|up_9|NZ_LS398548.1_309080_310328_+	sd00045, ANK, ankyrin repeats	NA|737aa|up_8|NZ_LS398548.1_310459_312670_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|90aa|up_7|NZ_LS398548.1_313003_313273_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|303aa|up_6|NZ_LS398548.1_313296_314205_-	PRK01528, truB, tRNA pseudouridine synthase B; Provisional	NA|147aa|up_5|NZ_LS398548.1_315085_315526_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|47aa|up_4|NZ_LS398548.1_315826_315967_-	NA	NA|96aa|up_3|NZ_LS398548.1_316218_316506_-	NA	NA|87aa|up_2|NZ_LS398548.1_316710_316971_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|107aa|up_1|NZ_LS398548.1_316974_317295_-	pfam12615, TraD_N, F sex factor protein N terminal	NA|271aa|up_0|NZ_LS398548.1_317296_318108_+	pfam13613, HTH_Tnp_4, Helix-turn-helix of DDE superfamily endonuclease	NA|301aa|down_0|NZ_LS398548.1_319082_319985_-	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|193aa|down_1|NZ_LS398548.1_320103_320682_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|421aa|down_2|NZ_LS398548.1_323747_325010_+	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|468aa|down_3|NZ_LS398548.1_325025_326429_+	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|109aa|down_4|NZ_LS398548.1_328420_328747_-	NA	NA|73aa|down_5|NZ_LS398548.1_328813_329032_-	NA	NA|105aa|down_6|NZ_LS398548.1_329117_329432_-	pfam05309, TraE, TraE protein	NA|57aa|down_7|NZ_LS398548.1_329550_329721_-	NA	NA|100aa|down_8|NZ_LS398548.1_330625_330925_+	NA	NA|298aa|down_9|NZ_LS398548.1_332248_333142_+	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain
GCF_900327275.1_Ka	NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	3	497946-498131	1	CRT	no		RT,DEDDh	Orphan	TAAAGGCAGAGCTGAAGG	18	4	150	497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|497964-497993|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498012-498041|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498060-498077|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113|498096-498113	NZ_LS398548.1_155630-155659|NZ_LS398548.1_349446-349417|NZ_LS398548.1_497916-497945|NZ_LS398548.1_1624220-1624249|NZ_LS398548.1_1895446-1895417|NZ_LS398548.1_2033648-2033619|NZ_LS398548.1_2368487-2368458|NZ_LS398548.1_78998-78969|NZ_LS398548.1_729186-729215|NZ_LS398548.1_972410-972381|NZ_LS398548.1_1412014-1412043|NZ_LS398548.1_1583993-1583964|NZ_LS398548.1_2430921-2430950|NZ_LS398548.1_78962-78933|NZ_LS398548.1_155666-155695|NZ_LS398548.1_280492-280521|NZ_LS398548.1_349350-349321|NZ_LS398548.1_349398-349369|NZ_LS398548.1_729222-729251|NZ_LS398548.1_1624280-1624309|NZ_LS398548.1_1785192-1785221|NZ_LS398548.1_1785228-1785257|NZ_LS398548.1_1946945-1946974|NZ_LS398548.1_2328229-2328258|NZ_LS398548.1_155630-155659|NZ_LS398548.1_349446-349417|NZ_LS398548.1_497916-497945|NZ_LS398548.1_1624220-1624249|NZ_LS398548.1_1895446-1895417|NZ_LS398548.1_2033648-2033619|NZ_LS398548.1_2368487-2368458|NZ_LS398548.1_78998-78969|NZ_LS398548.1_729186-729215|NZ_LS398548.1_972410-972381|NZ_LS398548.1_1412014-1412043|NZ_LS398548.1_1583993-1583964|NZ_LS398548.1_2430921-2430950|NZ_LS398548.1_78962-78933|NZ_LS398548.1_155666-155695|NZ_LS398548.1_280492-280521|NZ_LS398548.1_349350-349321|NZ_LS398548.1_349398-349369|NZ_LS398548.1_729222-729251|NZ_LS398548.1_1624280-1624309|NZ_LS398548.1_1785192-1785221|NZ_LS398548.1_1785228-1785257|NZ_LS398548.1_1946945-1946974|NZ_LS398548.1_2328229-2328258|NZ_LS398548.1_155666-155683|NZ_LS398548.1_349350-349333|NZ_LS398548.1_972410-972393|NZ_LS398548.1_1624280-1624297|NZ_LS398548.1_1785192-1785209|NZ_LS398548.1_78998-78981|NZ_LS398548.1_155630-155647|NZ_LS398548.1_349446-349429|NZ_LS398548.1_497916-497933|NZ_LS398548.1_729186-729203|NZ_LS398548.1_1135557-1135574|NZ_LS398548.1_1412014-1412031|NZ_LS398548.1_1583993-1583976|NZ_LS398548.1_1624220-1624237|NZ_LS398548.1_1895446-1895429|NZ_LS398548.1_2033648-2033631|NZ_LS398548.1_2368487-2368470|NZ_LS398548.1_2430921-2430938|NZ_LS398548.1_912909-912926|NZ_LS398548.1_1349861-1349878|NZ_LS398548.1_1465039-1465056|NZ_LS398548.1_1803428-1803445|NZ_LS398548.1_2209169-2209152|NZ_LS398548.1_78914-78897|NZ_LS398548.1_78926-78909|NZ_LS398548.1_155690-155707|NZ_LS398548.1_155702-155719|NZ_LS398548.1_180100-180083|NZ_LS398548.1_180112-180095|NZ_LS398548.1_280528-280545|NZ_LS398548.1_280540-280557|NZ_LS398548.1_349314-349297|NZ_LS398548.1_349326-349309|NZ_LS398548.1_434863-434846|NZ_LS398548.1_498120-498137|NZ_LS398548.1_682335-682352|NZ_LS398548.1_729258-729275|NZ_LS398548.1_729270-729287|NZ_LS398548.1_912885-912902|NZ_LS398548.1_912933-912950|NZ_LS398548.1_972350-972333|NZ_LS398548.1_972362-972345|NZ_LS398548.1_1230055-1230072|NZ_LS398548.1_1349837-1349854|NZ_LS398548.1_1349885-1349902|NZ_LS398548.1_1412050-1412067|NZ_LS398548.1_1465075-1465092|NZ_LS398548.1_1507881-1507864|NZ_LS398548.1_1583933-1583916|NZ_LS398548.1_1583945-1583928|NZ_LS398548.1_1583957-1583940|NZ_LS398548.1_1583969-1583952|NZ_LS398548.1_1624256-1624273|NZ_LS398548.1_1624316-1624333|NZ_LS398548.1_1624328-1624345|NZ_LS398548.1_1624340-1624357|NZ_LS398548.1_1624352-1624369|NZ_LS398548.1_1624364-1624381|NZ_LS398548.1_1624376-1624393|NZ_LS398548.1_1785264-1785281|NZ_LS398548.1_1803452-1803469|NZ_LS398548.1_1895386-1895369|NZ_LS398548.1_1895398-1895381|NZ_LS398548.1_2209145-2209128|NZ_LS398548.1_2209193-2209176|NZ_LS398548.1_2328265-2328282|NZ_LS398548.1_2328277-2328294|NZ_LS398548.1_2360496-2360513|NZ_LS398548.1_2368403-2368386|NZ_LS398548.1_2368415-2368398|NZ_LS398548.1_2368427-2368410|NZ_LS398548.1_2368439-2368422|NZ_LS398548.1_2430945-2430962|NZ_LS398548.1_2430957-2430974|NZ_LS398548.1_2430969-2430986|NZ_LS398548.1_1135581-1135598|NZ_LS398548.1_1412038-1412055|NZ_LS398548.1_1465015-1465032|NZ_LS398548.1_1465063-1465080|NZ_LS398548.1_1624304-1624321|NZ_LS398548.1_1946993-1947010|NZ_LS398548.1_1947005-1947022|NZ_LS398548.1_1947017-1947034|NZ_LS398548.1_1947029-1947046|NZ_LS398548.1_2328253-2328270|NZ_LS398548.1_78938-78921|NZ_LS398548.1_180124-180107|NZ_LS398548.1_280516-280533|NZ_LS398548.1_349374-349357|NZ_LS398548.1_349422-349405|NZ_LS398548.1_497940-497957|NZ_LS398548.1_729246-729263|NZ_LS398548.1_798854-798837|NZ_LS398548.1_972374-972357|NZ_LS398548.1_1135593-1135610|NZ_LS398548.1_1411990-1412007|NZ_LS398548.1_1624244-1624261|NZ_LS398548.1_1785252-1785269|NZ_LS398548.1_1895410-1895393|NZ_LS398548.1_1946981-1946998|NZ_LS398548.1_2033624-2033607|NZ_LS398548.1_2368451-2368434	NA	4	4	Orphan	RT,DEDDh	NA|93aa|up_8|NZ_LS398548.1_481306_481585_+,NA|58aa|down_7|NZ_LS398548.1_510602_510776_-	NA|270aa|up_9|NZ_LS398548.1_480123_480933_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|93aa|up_8|NZ_LS398548.1_481306_481585_+	NA	NA|234aa|up_7|NZ_LS398548.1_481649_482351_+	pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA|160aa|up_6|NZ_LS398548.1_482579_483059_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|165aa|up_5|NZ_LS398548.1_484026_484521_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|196aa|up_4|NZ_LS398548.1_484562_485150_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|337aa|up_3|NZ_LS398548.1_485271_486282_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|358aa|up_2|NZ_LS398548.1_486882_487956_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|152aa|up_1|NZ_LS398548.1_488277_488733_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|934aa|up_0|NZ_LS398548.1_491358_494160_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|585aa|down_0|NZ_LS398548.1_498270_500025_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|382aa|down_1|NZ_LS398548.1_500030_501176_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|880aa|down_2|NZ_LS398548.1_501198_503838_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|443aa|down_3|NZ_LS398548.1_506039_507368_-	sd00045, ANK, ankyrin repeats	NA|565aa|down_4|NZ_LS398548.1_507527_509222_-	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation	NA|128aa|down_5|NZ_LS398548.1_509218_509602_-	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|326aa|down_6|NZ_LS398548.1_509624_510602_-	pfam06834, TraU, TraU protein	NA|58aa|down_7|NZ_LS398548.1_510602_510776_-	NA	NA|220aa|down_8|NZ_LS398548.1_510866_511526_-	TIGR02743, hypothetical_protein, type-F conjugative transfer system protein TraW	NA|831aa|down_9|NZ_LS398548.1_511522_514015_-	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC
GCF_900327275.1_Ka	NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	4	1662219-1662558	1	PILER-CR	no	RT	RT,DEDDh	Unclear	CAGATTATCCAGACGCTTACAATAATAAAGGAATTGCTTT	40	1	1	1662361-1662422	NZ_LS398548.1_117509-117448	NA	3	3	Orphan	RT,DEDDh	NA|183aa|up_6|NZ_LS398548.1_1652750_1653299_-,NA|112aa|up_1|NZ_LS398548.1_1660573_1660909_+,NA|109aa|up_0|NZ_LS398548.1_1661457_1661784_+,NA|58aa|down_1|NZ_LS398548.1_1665779_1665953_+,NA|155aa|down_2|NZ_LS398548.1_1668001_1668466_+,NA|127aa|down_7|NZ_LS398548.1_1683739_1684120_-,NA|180aa|down_8|NZ_LS398548.1_1684119_1684659_-,NA|140aa|down_9|NZ_LS398548.1_1684925_1685345_-	NA|337aa|up_9|NZ_LS398548.1_1648147_1649158_-	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|192aa|up_8|NZ_LS398548.1_1649279_1649855_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|270aa|up_7|NZ_LS398548.1_1651937_1652747_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|183aa|up_6|NZ_LS398548.1_1652750_1653299_-	NA	NA|215aa|up_5|NZ_LS398548.1_1653401_1654046_-	sd00045, ANK, ankyrin repeats	NA|192aa|up_4|NZ_LS398548.1_1654083_1654659_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|95aa|up_3|NZ_LS398548.1_1659260_1659545_+	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain	NA|96aa|up_2|NZ_LS398548.1_1659790_1660078_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|112aa|up_1|NZ_LS398548.1_1660573_1660909_+	NA	NA|109aa|up_0|NZ_LS398548.1_1661457_1661784_+	NA	NA|217aa|down_0|NZ_LS398548.1_1664687_1665338_+	pfam02630, SCO1-SenC, SCO1/SenC	NA|58aa|down_1|NZ_LS398548.1_1665779_1665953_+	NA	NA|155aa|down_2|NZ_LS398548.1_1668001_1668466_+	NA	NA|214aa|down_3|NZ_LS398548.1_1668522_1669164_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|248aa|down_4|NZ_LS398548.1_1669528_1670271_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|106aa|down_5|NZ_LS398548.1_1671092_1671410_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|133aa|down_6|NZ_LS398548.1_1683253_1683652_+	pfam06412, TraD, Conjugal transfer protein TraD	NA|127aa|down_7|NZ_LS398548.1_1683739_1684120_-	NA	NA|180aa|down_8|NZ_LS398548.1_1684119_1684659_-	NA	NA|140aa|down_9|NZ_LS398548.1_1684925_1685345_-	NA
GCF_900327275.1_Ka	NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	5	1790698-1790948	2	PILER-CR	no	RT	RT,DEDDh	Unclear	TCTAGTTTATTCAAAGCAGTTCCTTTATTAACATAAGCTAGTGCAAA	47	2	6	1790745-1790799|1790745-1790799|1790745-1790799|1790745-1790799|1790745-1790799|1790847-1790918	NZ_LS398548.1_188975-188921|NZ_LS398548.1_903203-903257|NZ_LS398548.1_1339509-1339563|NZ_LS398548.1_1455369-1455423|NZ_LS398548.1_1594978-1594924|NZ_LS398548.1_188890-188819	NA	2	2	Orphan	RT,DEDDh	NA|723aa|up_8|NZ_LS398548.1_1772598_1774767_+,NA|99aa|down_0|NZ_LS398548.1_1793083_1793380_+	NA|121aa|up_9|NZ_LS398548.1_1769182_1769545_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|723aa|up_8|NZ_LS398548.1_1772598_1774767_+	NA	NA|268aa|up_7|NZ_LS398548.1_1775059_1775863_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|313aa|up_6|NZ_LS398548.1_1778643_1779582_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|152aa|up_5|NZ_LS398548.1_1779649_1780105_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|414aa|up_4|NZ_LS398548.1_1780402_1781644_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|521aa|up_3|NZ_LS398548.1_1781689_1783252_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|336aa|up_2|NZ_LS398548.1_1784421_1785429_+	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|585aa|up_1|NZ_LS398548.1_1785438_1787193_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|309aa|up_0|NZ_LS398548.1_1789293_1790220_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|99aa|down_0|NZ_LS398548.1_1793083_1793380_+	NA	RT|572aa|down_1|NZ_LS398548.1_1794116_1795832_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|436aa|down_2|NZ_LS398548.1_1796530_1797838_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|508aa|down_3|NZ_LS398548.1_1797809_1799333_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|316aa|down_4|NZ_LS398548.1_1802645_1803593_+	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|239aa|down_5|NZ_LS398548.1_1808678_1809395_-	pfam13728, TraF, F plasmid transfer operon protein	NA|149aa|down_6|NZ_LS398548.1_1809521_1809968_-	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown]	NA|763aa|down_7|NZ_LS398548.1_1811460_1813749_-	pfam12796, Ank_2, Ankyrin repeats (3 copies)	NA|128aa|down_8|NZ_LS398548.1_1816794_1817178_-	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|326aa|down_9|NZ_LS398548.1_1817200_1818178_-	pfam06834, TraU, TraU protein
GCF_900327275.1_Ka	NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	6	2328139-2328254	3	CRISPRCasFinder	no	RT	RT,DEDDh	Unclear	TGAAGGTATAGAGATTGGTGAAACTAAAGGCA	32	1	6	2328171-2328222|2328171-2328222|2328171-2328222|2328171-2328222|2328171-2328222|2328171-2328222	NZ_LS398548.1_2368449-2368398|NZ_LS398548.1_180134-180083|NZ_LS398548.1_972384-972333|NZ_LS398548.1_1895420-1895369|NZ_LS398548.1_1946983-1947034|NZ_LS398548.1_2368461-2368410	NA	1	1	Orphan	RT,DEDDh	NA|183aa|up_7|NZ_LS398548.1_2312920_2313469_+,NA|58aa|down_8|NZ_LS398548.1_2339040_2339214_-	NA|192aa|up_9|NZ_LS398548.1_2311618_2312194_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|215aa|up_8|NZ_LS398548.1_2312228_2312873_+	sd00045, ANK, ankyrin repeats	NA|183aa|up_7|NZ_LS398548.1_2312920_2313469_+	NA	NA|270aa|up_6|NZ_LS398548.1_2313472_2314282_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|195aa|up_5|NZ_LS398548.1_2316365_2316950_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|337aa|up_4|NZ_LS398548.1_2317055_2318066_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|152aa|up_3|NZ_LS398548.1_2318133_2318589_-	pfam06412, TraD, Conjugal transfer protein TraD	RT|572aa|up_2|NZ_LS398548.1_2318798_2320514_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|934aa|up_1|NZ_LS398548.1_2321214_2324016_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|365aa|up_0|NZ_LS398548.1_2326228_2327323_+	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|585aa|down_0|NZ_LS398548.1_2328427_2330182_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|380aa|down_1|NZ_LS398548.1_2330187_2331327_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|878aa|down_2|NZ_LS398548.1_2331339_2333973_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|434aa|down_3|NZ_LS398548.1_2333972_2335274_-	pfam06122, TraH, Conjugative relaxosome accessory transposon protein	NA|233aa|down_4|NZ_LS398548.1_2335270_2335969_-	pfam13728, TraF, F plasmid transfer operon protein	NA|565aa|down_5|NZ_LS398548.1_2335965_2337660_-	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation	NA|128aa|down_6|NZ_LS398548.1_2337656_2338040_-	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|326aa|down_7|NZ_LS398548.1_2338062_2339040_-	pfam06834, TraU, TraU protein	NA|58aa|down_8|NZ_LS398548.1_2339040_2339214_-	NA	NA|220aa|down_9|NZ_LS398548.1_2339297_2339957_-	TIGR02743, hypothetical_protein, type-F conjugative transfer system protein TraW
GCF_900327275.1_Ka	NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	7	2404586-2404808	3,4	PILER-CR,CRISPRCasFinder	no		RT,DEDDh	Orphan	TAAAATCAGCATAAGCTTCAGCATAGTTTTGAGCATAACA,TTCAGCATAGTTTTGAGCATAACA	40,24	0	0	NA	NA	NA:NA	2,3	3	Orphan	RT,DEDDh	NA|83aa|up_8|NZ_LS398548.1_2389276_2389525_-,NA|460aa|down_0|NZ_LS398548.1_2405671_2407051_-,NA|53aa|down_1|NZ_LS398548.1_2407656_2407815_+,NA|53aa|down_3|NZ_LS398548.1_2409303_2409462_+,NA|169aa|down_6|NZ_LS398548.1_2415538_2416045_+,NA|176aa|down_9|NZ_LS398548.1_2419514_2420042_-	NA|61aa|up_9|NZ_LS398548.1_2388747_2388930_-	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS)	NA|83aa|up_8|NZ_LS398548.1_2389276_2389525_-	NA	NA|1642aa|up_7|NZ_LS398548.1_2392891_2397817_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|448aa|up_6|NZ_LS398548.1_2397898_2399242_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|313aa|up_5|NZ_LS398548.1_2399267_2400206_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|144aa|up_4|NZ_LS398548.1_2400240_2400672_+	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA	NA|176aa|up_3|NZ_LS398548.1_2400761_2401289_+	PRK01250, PRK01250, inorganic diphosphatase	NA|291aa|up_2|NZ_LS398548.1_2401312_2402185_+	PRK06581, PRK06581, DNA polymerase III subunit delta'; Validated	NA|314aa|up_1|NZ_LS398548.1_2402168_2403110_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|98aa|up_0|NZ_LS398548.1_2403905_2404199_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|460aa|down_0|NZ_LS398548.1_2405671_2407051_-	NA	NA|53aa|down_1|NZ_LS398548.1_2407656_2407815_+	NA	NA|63aa|down_2|NZ_LS398548.1_2407819_2408008_+	sd00045, ANK, ankyrin repeats	NA|53aa|down_3|NZ_LS398548.1_2409303_2409462_+	NA	NA|191aa|down_4|NZ_LS398548.1_2414240_2414813_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|215aa|down_5|NZ_LS398548.1_2414847_2415492_+	sd00045, ANK, ankyrin repeats	NA|169aa|down_6|NZ_LS398548.1_2415538_2416045_+	NA	NA|270aa|down_7|NZ_LS398548.1_2416048_2416858_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|192aa|down_8|NZ_LS398548.1_2418933_2419509_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|176aa|down_9|NZ_LS398548.1_2419514_2420042_-	NA
