The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	25718	110291	2469803	integrase,transposase	Wolbachia_phage(11.76%)	50	22763:22802	117178:117217
22763:22802	attL	TAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
WP_064612783.1|25718_26633_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.5	9.7e-85
WP_064612782.1|27495_27828_-	hypothetical protein	NA	A0A218KST2	Xenohaliotis_phage	50.0	1.0e-23
WP_064612781.1|28177_29749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064612780.1|29757_31194_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.2	8.7e-72
WP_109510521.1|31433_32063_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	32.4	1.8e-13
WP_064613174.1|32109_32616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045914802.1|32997_33201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613168.1|33564_34440_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_045912726.1|34966_35764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912727.1|37480_39259_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	9.5e-28
WP_045912728.1|39308_40061_-	UMP kinase	NA	NA	NA	NA	NA
WP_045912729.1|40289_41381_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_045912730.1|41370_42780_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_045912731.1|42776_44246_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_064613166.1|44232_45984_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_052691721.1|46183_46492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080946481.1|46484_47423_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_045912799.1|47491_48625_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.7	1.4e-24
WP_045912800.1|48710_50639_-	molecular chaperone DnaK	NA	A0A2P1EIW2	Megavirus	46.5	5.9e-140
WP_045912801.1|51020_51308_-	BolA family transcriptional regulator	NA	NA	NA	NA	NA
WP_045912802.1|51515_52313_+	enoyl-ACP reductase	NA	NA	NA	NA	NA
WP_081420665.1|53656_54481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912956.1|54960_55830_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_064613160.1|57834_58812_+	reverse transcriptase N-terminal domain-containing protein	NA	A0A0U4J920	Pseudomonas_phage	39.4	7.5e-51
WP_045912569.1|58943_59402_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	39.4	1.4e-20
WP_045912570.1|59655_59940_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_045912571.1|60658_61387_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_064613158.1|61856_62471_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	32.3	2.1e-06
WP_109510522.1|63837_64661_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_052691726.1|65474_65759_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_174197557.1|66004_66292_+|integrase	tyrosine-type recombinase/integrase	integrase	B6SD77	Bacteriophage	34.4	8.2e-06
WP_064612973.1|66787_67123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510523.1|67671_67878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912919.1|69141_70131_-	ankyrin repeat domain-containing protein	NA	Q70GS9	Fowlpox_virus	29.7	3.2e-09
WP_109510525.1|70894_71278_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_109510526.1|71274_72969_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_109510527.1|76984_78739_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064613356.1|78748_79768_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_064612603.1|87507_87963_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_045912882.1|88261_89290_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109510528.1|90325_93763_+	response regulator	NA	A0A1V0SGX0	Hokovirus	23.0	2.8e-15
WP_045912840.1|96933_98082_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_045912999.1|100198_100834_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_174197605.1|100952_101696_+	rhodanese domain-containing protein	NA	NA	NA	NA	NA
WP_109510529.1|104284_105721_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	1.6e-70
WP_109510530.1|105960_106590_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	31.9	6.8e-13
WP_109510733.1|106636_107140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510531.1|107820_108603_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_064612941.1|108703_109282_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	31.0	1.8e-07
WP_064612940.1|109400_110291_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	62.2	3.5e-87
117178:117217	attR	TAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
>prophage 2
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	121595	190668	2469803	integrase,transposase	Wolbachia_phage(20.0%)	46	135301:135360	171264:172516
WP_064612726.1|121595_122570_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	1.4e-84
WP_045913037.1|125668_127537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912774.1|128818_129367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510532.1|129469_130114_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	31.3	3.1e-13
WP_109510533.1|130125_130701_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	29.2	4.6e-08
WP_109510534.1|132381_134094_-	hypothetical protein	NA	NA	NA	NA	NA
135301:135360	attL	TTCCTTGTATGATAAAAATAAGTGAAATTGCAATAAAATAAAAGATTATAGCAATAGCAC	NA	NA	NA	NA
WP_012460827.1|135511_136480_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_064612577.1|136784_137681_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_064612575.1|137790_138351_+	DUF4065 domain-containing protein	NA	I6R0L8	Salmonella_phage	39.0	2.9e-23
WP_081420562.1|138562_139096_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109510535.1|140018_140841_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_162562996.1|141258_141420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612564.1|141833_142406_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	30.4	8.7e-07
WP_064612562.1|142443_143088_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	32.2	9.7e-15
WP_109510536.1|143135_143684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064612944.1|144945_145662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510538.1|147720_148296_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	30.2	1.0e-07
WP_109510539.1|148417_149368_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	2.9e-84
WP_174197607.1|149435_149837_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109510541.1|150186_152613_+	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	21.6	7.0e-05
WP_064613225.1|154859_155867_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_080946509.1|157297_157606_+	reverse transcriptase N-terminal domain-containing protein	NA	A0A0U4J920	Pseudomonas_phage	49.1	2.2e-17
WP_081420677.1|158094_159294_+|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	1.3e-25
WP_012460929.1|159414_159750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613219.1|160299_160776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510542.1|160920_161250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510543.1|162067_162619_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109510544.1|162618_162948_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109510545.1|165418_166078_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_174190469.1|166168_166342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174197559.1|166342_167320_+	TraU family protein	NA	NA	NA	NA	NA
WP_064612696.1|167342_167726_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_109510546.1|167722_169417_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_109510547.1|169575_170106_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012460827.1|170143_171112_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_162562997.1|171261_172152_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_109510549.1|172346_173063_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
171264:172516	attR	GTGCTATTGCTATAATCTTTTATTTTATTGCAATTTCACTTATTTTTATCATACAAGGAATGCTAATATTCATATAAAAGATAAGAGTGGGAAATTTCCAATACATTTAGCTGCTGGAAATGGCTTCAAAGATGTAGTACAGTTTTTGTTAGATTTAGATATATATACATATCCTAATATGATAAATTCACAAGATAATGATGGTCAAACTCTTTTACATTTAATTGCTAAGTATAGCTTTGAAAAATTTCCTACTAATCTTCTTAGTACTGTTCTTTCTTACGAGCGTCATTTAGATGATTATGACAAGCGATTTATAGATACAGCAGATATGCTGTTGAATAGAGGAGTAGATACAAACATACAAAATAATGATGGTCAAACTGCTTTACATTTGGCTATTTTATATCATCCTAAAGATTTACATGTAAGATATGAAGAATACCTAAGAAAGAATAGTAATGTAGCTATTTCATATCGCTCAACAGAGTTAATAAAGAGTTTGTCAAGTAATAATGTTAATTTTAATTTGAAAAATAAAGACGGTTATACAGTTTTAGATTTAGCTTTAGCTATTGAACATGATCAGCATAAAATCGCAGAGCACTTGCAAGAGAAAAGGCTATTATGGAGGGAAGGGCAAATAAAGGTCGCAAATAACTCGCTGGTAATAATAGCGGAAAATAAGGAGCAGATATTAAAATTAAAACCCGATTCAGCAAAAACCGATGCTGATAAATTTTTGGAAAAGTGGCGTGAGTTACCTATCAACATAACTGAGCAGATATTAGACACATTGGATGATGATGATTTTGGAGCATTTCAACAGCTTAACGAAGAACGTAGTAAAGTACCGTTGGGAGAGGACAGTATTCATGAAATGATTTAAGATTTGACGACATCTATTTTTAGTTGCTTTGTTTTGATTTGTTATGTTCTTAGATTTGTAGTAACTAGTATTATCGCAAATAAGATAATAACTATTATGGGTTATAGTTGAAGCATTTTAGCAGTCTTTGATTGCATCATGCTTCTCTTCTTTGACTAAACTTCATTTTAGATAGATATAAAAATAATGCAATAATGAATCCATTAGCAATAATGCTAATTATAGGGCTACTTAATTACTTATCGGTAGAATTAGCTACTGCTAACTCTTTGCCTACAGGGTTTTTATGGTACAATGATAAACATGGTCATGAGCTTGATGAATCTACTTCTAAGTTGATGAGGAGCGCTCATGATCATAGAAT	NA	NA	NA	NA
WP_109510550.1|174361_176944_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_045912977.1|177040_178186_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_064613408.1|178191_179949_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064613406.1|179958_180927_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109510551.1|183848_186668_-	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	24.4	1.7e-07
WP_045915087.1|186965_187421_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109510552.1|187745_189155_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109510553.1|189302_189566_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109510554.1|189633_190668_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	2.4e-84
>prophage 4
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	301851	378468	2469803	integrase,transposase,tRNA	Orpheovirus(25.0%)	54	317301:317360	399586:399695
WP_045912246.1|301851_305055_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	34.2	1.0e-176
WP_045912245.1|305091_305697_-	COQ9 family protein	NA	NA	NA	NA	NA
WP_012461860.1|305867_306074_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_052691639.1|306102_306612_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_045912244.1|306785_308066_+	MFS transporter	NA	NA	NA	NA	NA
WP_045912243.1|308266_308989_+	DUF5394 family protein	NA	NA	NA	NA	NA
WP_045912242.1|309080_310328_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_045912241.1|310459_312670_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_012461867.1|313003_313273_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_045912240.1|313296_314205_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_012461870.1|315085_315526_-	helix-turn-helix transcriptional regulator	NA	K4K6E9	Caulobacter_phage	39.4	1.3e-13
WP_162562998.1|315826_315967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912239.1|316218_316506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080946435.1|316710_316971_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_045912237.1|316974_317295_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109510563.1|317296_318107_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
317301:317360	attL	TTAAAGAGTTAAAGGATGAAAAATTTCGTCGATTAACAGGAGTAAGGAAGAGGACATTTT	NA	NA	NA	NA
WP_109510564.1|318195_318423_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_064613025.1|319082_319985_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	62.7	1.3e-86
WP_064613023.1|320103_320682_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	29.8	4.3e-06
WP_045912872.1|323747_325010_+	MFS transporter	NA	NA	NA	NA	NA
WP_045912871.1|325025_326429_+	sodium:pantothenate symporter	NA	NA	NA	NA	NA
WP_109510565.1|328420_328747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420649.1|328813_329032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420648.1|329117_329432_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_162562999.1|329550_329721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944522.1|330625_330925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613012.1|332248_333142_+|integrase	integrase family protein	integrase	NA	NA	NA	NA
WP_041621693.1|333624_333960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912620.1|336624_337770_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_045912621.1|338069_338465_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA	NA
WP_045912622.1|338495_339410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461923.1|339406_339880_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_045912623.1|339893_341654_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.9	2.1e-59
WP_012461925.1|341980_342736_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	34.0	1.6e-21
WP_162563022.1|342764_343553_-	MlaE family lipid ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_045912625.1|343668_344460_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_045912626.1|344585_345209_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_052691708.1|345916_346114_+	TraU family protein	NA	NA	NA	NA	NA
WP_052691709.1|346150_346780_+	TraU family protein	NA	NA	NA	NA	NA
WP_064613007.1|347627_349163_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_064613005.1|349172_350216_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_045913029.1|356312_356768_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_080946510.1|356826_357195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045913031.1|357702_358278_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	30.2	1.0e-07
WP_064613139.1|361167_361719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613135.1|361765_362410_-	ankyrin repeat domain-containing protein	NA	M1HFL9	Paramecium_bursaria_Chlorella_virus	33.9	7.5e-07
WP_045912776.1|364062_365880_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A0K1LMZ5	Caulobacter_phage	54.3	6.0e-187
WP_045912777.1|365902_366904_+	ribonucleotide-diphosphate reductase subunit beta	NA	M1I8A4	Pelagibacter_phage	53.5	1.7e-98
WP_081420661.1|367394_367970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912992.1|368321_368570_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_052691750.1|370256_371153_-	PRANC domain-containing protein	NA	A0A0M3ZRL8	Turkeypox_virus	30.6	2.6e-05
WP_081420662.1|373303_373780_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_109510569.1|374871_375834_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	3.0e-84
WP_080946468.1|378294_378468_-|transposase	transposase	transposase	NA	NA	NA	NA
399586:399695	attR	TTAAAGAGTTAAAGGATGAAAAATTTCGTCGATTAACAGGAGTAAGGAAGAGGACATTTTCAAAGATGGTGGATATTTTGAGGAAAGCTGATGGTCTTAAGAAATCAAAA	NA	NA	NA	NA
>prophage 5
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	465591	532356	2469803	integrase,transposase,tRNA	Tupanvirus(20.0%)	46	459834:459851	537981:537998
459834:459851	attL	ATTTTTGATAATTTAAAT	NA	NA	NA	NA
WP_045912521.1|465591_468156_-|tRNA	valine--tRNA ligase	tRNA	A0A2K9L2Y7	Tupanvirus	50.7	1.2e-246
WP_045912522.1|468187_469063_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_045912523.1|469332_470094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912524.1|470445_471444_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_080946451.1|472039_472321_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_045912526.1|473242_474442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613080.1|475057_476623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613078.1|476631_478080_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.8	3.9e-72
WP_064613076.1|478314_478890_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	30.4	2.3e-07
WP_064613074.1|478924_479569_+	ankyrin repeat domain-containing protein	NA	K7Y837	Megavirus	33.5	2.8e-14
WP_064613072.1|479616_480120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045913641.1|480123_480933_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	4.1e-18
WP_045915527.1|481306_481585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613070.1|481649_482351_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_081420599.1|482579_483059_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109455797.1|484026_484521_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_109510576.1|484562_485150_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	33.3	4.0e-07
WP_064613239.1|485271_486282_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	6.3e-85
WP_045915951.1|486882_487956_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_064613237.1|488277_488733_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109510738.1|491358_494160_+	AAA family ATPase	NA	A0A0H3UZA5	Geobacillus_virus	22.0	1.3e-07
WP_064612991.1|497145_498261_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_064612989.1|498270_500025_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064612987.1|500030_501176_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109510577.1|501198_503838_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_064612719.1|506039_507368_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_109510546.1|507527_509222_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_064612696.1|509218_509602_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_174197559.1|509624_510602_-	TraU family protein	NA	NA	NA	NA	NA
WP_174190469.1|510602_510776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510578.1|510866_511526_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_109510579.1|511522_514015_-	TraC family protein	NA	NA	NA	NA	NA
WP_064612735.1|513995_514325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510580.1|514324_515644_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_081420583.1|515682_516018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613303.1|516424_516913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912835.1|516909_517461_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_041621693.1|517460_517796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613282.1|517927_519148_-|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.3	2.3e-25
WP_045912806.1|519599_520352_-	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
WP_045912805.1|520506_520983_-	RDD family protein	NA	NA	NA	NA	NA
WP_052691722.1|522144_524361_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_045912932.1|525982_528856_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.6	2.2e-308
WP_080946469.1|530805_531153_-	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_108883845.1|532078_532153_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_045918146.1|532152_532356_-|transposase	transposase	transposase	NA	NA	NA	NA
537981:537998	attR	ATTTAAATTATCAAAAAT	NA	NA	NA	NA
>prophage 6
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	671115	700919	2469803	integrase,transposase,tRNA	Tupanvirus(22.22%)	29	689131:689157	701047:701073
WP_045912787.1|671115_672153_-|tRNA	tRNA dimethylallyltransferase	tRNA	NA	NA	NA	NA
WP_045912788.1|672222_672840_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	42.5	1.1e-23
WP_012462077.1|673405_673651_+	DUF2312 domain-containing protein	NA	B0VK10	Azospirillum_phage	46.7	5.0e-12
WP_162563000.1|674144_674306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613196.1|674994_675282_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A077KGX2	Edwardsiella_phage	38.6	1.1e-05
WP_174197613.1|675260_675494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613194.1|675631_675868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162563001.1|675995_676142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613192.1|676238_677339_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_064613205.1|677644_678190_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	29.7	9.8e-08
WP_045912573.1|680348_680993_-	zinc-ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_045912574.1|681093_681945_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_109510584.1|682035_682476_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_081420670.1|682485_683733_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_109510585.1|683734_684094_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109510586.1|685118_685262_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_064613057.1|685262_686138_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_045913073.1|686857_687259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613191.1|687352_688534_-	hypothetical protein	NA	NA	NA	NA	NA
689131:689157	attL	AGGTAGAAAATAGGTAGAAAAAAAAAT	NA	NA	NA	NA
WP_081420667.1|689363_690206_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A2D1GNR7	Pseudomonas_phage	25.3	1.7e-11
WP_045915450.1|691796_692093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420617.1|692184_692853_-|integrase	site-specific integrase	integrase	B6SD77	Bacteriophage	32.1	2.2e-09
WP_064613124.1|693156_693525_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_064612658.1|694408_695125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510741.1|696004_696511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510587.1|696557_697202_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	33.0	2.2e-14
WP_109510588.1|697236_697809_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	28.6	4.8e-05
WP_109510589.1|699176_699752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612898.1|699980_700919_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	4.5e-85
701047:701073	attR	ATTTTTTTTTCTACCTATTTTCTACCT	NA	NA	NA	NA
>prophage 7
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	847156	929864	2469803	integrase,transposase,tRNA	Bacillus_phage(20.0%)	46	927912:927928	934064:934080
WP_080946429.1|847156_847330_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_045912119.1|849679_850045_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_011944543.1|850064_850271_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_045912120.1|850714_852607_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	30.8	6.0e-89
WP_045912121.1|852769_853936_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_045912122.1|854087_855578_+	trigger factor	NA	NA	NA	NA	NA
WP_162563002.1|855688_855952_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_045912123.1|856080_857751_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.8	1.5e-43
WP_045912124.1|857859_858609_-	winged helix-turn-helix domain-containing protein	NA	W8CYM9	Bacillus_phage	27.5	1.2e-11
WP_045912125.1|858902_859259_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_041621791.1|859340_859613_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_045912126.1|859655_860183_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_045912127.1|860338_861814_+	NTP/NDP exchange transporter	NA	NA	NA	NA	NA
WP_045912129.1|865015_866359_+	DUF2748 family protein	NA	NA	NA	NA	NA
WP_011945154.1|866592_867702_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_064612747.1|874476_875049_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	30.1	3.3e-06
WP_064613120.1|875083_875728_+	ankyrin repeat domain-containing protein	NA	K7Y837	Megavirus	33.5	2.2e-14
WP_064613414.1|875774_876326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912891.1|878089_879592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510603.1|882195_882771_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	31.0	1.8e-07
WP_109510604.1|882892_883903_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	3.1e-84
WP_109510743.1|883970_884234_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_081420563.1|885183_885483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510571.1|886207_887923_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
WP_174197555.1|888603_889188_+	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_081420564.1|891128_892841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510530.1|894537_895167_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	31.9	6.8e-13
WP_045912891.1|897006_898509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510603.1|901112_901688_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	31.0	1.8e-07
WP_109510606.1|901809_902832_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	1.4e-84
WP_064613090.1|903022_904225_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_162562879.1|904321_904465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613088.1|904548_905004_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109510607.1|905214_906930_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
WP_109510744.1|907996_909826_+	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	25.5	8.6e-08
WP_064613309.1|912078_913074_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_064613307.1|913083_914838_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064613305.1|914841_915987_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_064613304.1|916002_918654_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_109510549.1|919952_920669_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_109510608.1|920863_922183_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_109510609.1|922342_924034_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_109510610.1|924030_924414_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_045913066.1|925612_926602_+	ankyrin repeat domain-containing protein	NA	A0A1V0QGP6	Shearwaterpox_virus	27.8	9.4e-09
927912:927928	attL	TTTCCTTATCCTAATCT	NA	NA	NA	NA
WP_162562990.1|928149_928287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420607.1|929087_929864_-|integrase	site-specific integrase	integrase	A0A0U4JNS1	Bacillus_phage	28.5	1.6e-16
934064:934080	attR	TTTCCTTATCCTAATCT	NA	NA	NA	NA
>prophage 8
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	953002	1022075	2469803	integrase,transposase	Streptococcus_phage(18.18%)	54	947416:947439	1000788:1000811
947416:947439	attL	TATAGTCATTTACAATGAAGTTTG	NA	NA	NA	NA
WP_174197574.1|953002_954322_+|integrase	site-specific integrase	integrase	Q9T1R0	Acyrthosiphon_pisum_secondary_endosymbiont_phage	26.0	5.3e-15
WP_041621693.1|954377_954713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912835.1|954712_955264_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_064612632.1|955260_955749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081420664.1|956155_956491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081420663.1|956529_957849_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_045912833.1|957848_958169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613149.1|958149_960642_+	TraC family protein	NA	NA	NA	NA	NA
WP_064613148.1|960638_961298_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_012460825.1|961388_961592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174197576.1|961592_962570_+	TraU family protein	NA	NA	NA	NA	NA
WP_064612696.1|962592_962976_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_064612732.1|964663_965362_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_064612731.1|965358_966660_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_081420586.1|966659_969287_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_064612730.1|969299_970439_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_064612729.1|970444_972199_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_109510611.1|972208_973180_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_081420655.1|973231_974326_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_109510612.1|976164_978966_-	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	24.6	7.8e-08
WP_045913051.1|979292_980624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613253.1|980669_981125_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_064613251.1|981192_982239_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	1.9e-84
WP_109510613.1|982360_982948_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	29.4	9.8e-06
WP_109510614.1|982989_983484_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_081420596.1|983502_983970_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_081420595.1|984457_984937_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_064612793.1|985165_985867_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_045915136.1|985931_986210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612960.1|986577_987387_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	1.8e-18
WP_109510615.1|987390_987894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612589.1|987941_988586_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	33.0	2.8e-14
WP_064612587.1|988620_989196_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	31.9	2.3e-07
WP_064612585.1|989429_990878_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.8	6.7e-72
WP_064612583.1|990886_992602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912738.1|993266_996008_-	cell surface protein	NA	NA	NA	NA	NA
WP_045912737.1|996142_996808_-	guanylate kinase	NA	A0A223FN12	Murmansk_poxvirus	31.2	8.5e-14
WP_045912736.1|997016_997784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162563005.1|998154_998316_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_045912735.1|998504_998861_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA	NA
WP_045912734.1|998918_1000271_-	signal recognition particle protein	NA	D6PHS7	uncultured_phage	26.8	3.9e-05
WP_011944757.1|1001359_1001641_-	ETC complex I subunit	NA	NA	NA	NA	NA
1000788:1000811	attR	CAAACTTCATTGTAAATGACTATA	NA	NA	NA	NA
WP_011944758.1|1001694_1001934_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_045912733.1|1002581_1002845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612581.1|1003034_1003790_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_045912843.1|1004801_1005149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912845.1|1008131_1010603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064612656.1|1011236_1012022_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	29.5	5.7e-17
WP_064612655.1|1012063_1012519_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_081420568.1|1012796_1013876_+	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_064612651.1|1014608_1015079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052691742.1|1019117_1019624_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_045912959.1|1019918_1020713_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_162563006.1|1021913_1022075_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	1270729	1339138	2469803	integrase,transposase,tRNA	Bacteriophage(18.18%)	48	1270585:1270624	1322886:1322925
1270585:1270624	attL	TAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
WP_109510629.1|1270729_1271552_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_045912853.1|1271659_1274245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912852.1|1274285_1276784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912476.1|1278813_1279167_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_045912477.1|1279322_1280153_-	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_045912486.1|1280969_1282415_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_045912487.1|1282849_1285519_+	DNA polymerase I	NA	A0A1B1IST8	uncultured_Mediterranean_phage	30.7	1.2e-42
WP_045912478.1|1285584_1286949_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_045912479.1|1286957_1287641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912480.1|1287711_1288785_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_045912481.1|1288777_1289431_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	32.7	6.4e-22
WP_045912482.1|1289570_1291439_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_045912483.1|1292078_1293362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912488.1|1295333_1296665_-	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_045912484.1|1298327_1299356_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_045912485.1|1299348_1300383_+	ferrochelatase	NA	NA	NA	NA	NA
WP_012461171.1|1300391_1300826_+	CopD family protein	NA	NA	NA	NA	NA
WP_064612837.1|1302575_1302944_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_081420617.1|1303247_1303916_+|integrase	site-specific integrase	integrase	B6SD77	Bacteriophage	32.1	2.2e-09
WP_045915450.1|1304007_1304304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510631.1|1304853_1305060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912963.1|1306323_1307310_-	ankyrin repeat domain-containing protein	NA	Q70HB9	Fowlpox_virus	28.3	4.8e-13
WP_045912829.1|1307846_1308230_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_064612752.1|1308226_1309918_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_064612751.1|1309914_1310613_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_109510632.1|1311599_1311926_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_081420588.1|1312096_1313065_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	29.8	2.9e-23
WP_011945086.1|1315006_1315876_-	RMD1 family protein	NA	NA	NA	NA	NA
WP_174197578.1|1316472_1316628_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_052691723.1|1316655_1316913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912823.1|1318192_1319272_-	COX15/CtaA family protein	NA	NA	NA	NA	NA
WP_109510633.1|1321449_1322272_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_045912908.1|1323838_1325140_-	malic enzyme	NA	NA	NA	NA	NA
1322886:1322925	attR	TAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
WP_045912904.1|1325159_1326086_-	AEC family transporter	NA	NA	NA	NA	NA
WP_045912905.1|1326395_1326995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912906.1|1327058_1327442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064612748.1|1329600_1331037_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.7	1.3e-72
WP_064612747.1|1331271_1331844_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	30.1	3.3e-06
WP_064612746.1|1331878_1332523_+	ankyrin repeat domain-containing protein	NA	K7Y837	Megavirus	33.0	1.8e-13
WP_064612745.1|1332570_1333074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045913603.1|1333077_1333887_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	5.3e-18
WP_045915527.1|1334253_1334532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613070.1|1334596_1335298_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_081420599.1|1335526_1336006_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_081420598.1|1336492_1336960_+	histidine kinase	NA	NA	NA	NA	NA
WP_064612797.1|1336978_1337473_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_064612772.1|1337514_1338102_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	29.4	7.5e-06
WP_109510634.1|1338223_1339138_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.2	3.3e-85
>prophage 10
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	1418343	1492553	2469803	integrase,transposase,protease,tRNA	Streptococcus_phage(16.67%)	58	1401307:1401325	1506023:1506041
1401307:1401325	attL	AAACATTCTTAACTTATGA	NA	NA	NA	NA
WP_081420588.1|1418343_1419312_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	29.8	2.9e-23
WP_045912186.1|1419526_1419931_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_045912187.1|1419927_1421364_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_052691625.1|1421709_1422849_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_045912189.1|1422884_1423658_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_045912190.1|1424037_1426035_-	lytic transglycosylase domain-containing protein	NA	I1VXB7	Halocynthia_phage	39.4	3.4e-05
WP_045912191.1|1426076_1427015_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_045912192.1|1427836_1428871_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.7	2.4e-31
WP_045912193.1|1428867_1431306_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_045912194.1|1431391_1432321_-	translation elongation factor Ts	NA	NA	NA	NA	NA
WP_045912209.1|1432317_1433178_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_045912195.1|1433520_1434372_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_045912196.1|1434355_1436008_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.6	9.4e-46
WP_109510748.1|1436571_1436715_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_045912197.1|1436812_1438300_-	ankyrin repeat domain-containing protein	NA	Q6VZX1	Canarypox_virus	29.8	5.6e-05
WP_045912198.1|1439465_1440977_+	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA	NA
WP_080946433.1|1441309_1441573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912199.1|1441814_1443479_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_109510647.1|1443572_1444988_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.7	5.6e-71
WP_109510648.1|1445326_1446892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_108839488.1|1446900_1448337_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	2.4e-74
WP_064613103.1|1448572_1449148_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	31.9	1.0e-07
WP_064613100.1|1449185_1449830_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	32.4	3.7e-14
WP_064613098.1|1449877_1450384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045917470.1|1450387_1451197_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.4e-18
WP_064613096.1|1451570_1452299_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_064613094.1|1452320_1453178_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_045915533.1|1453278_1453857_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	30.2	3.0e-07
WP_064613092.1|1453975_1454998_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	65.3	9.8e-86
WP_064613090.1|1455188_1456391_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_162562879.1|1456487_1456631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510607.1|1457381_1459097_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
WP_109510744.1|1460163_1461993_+	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	25.5	8.6e-08
WP_174197624.1|1463098_1464193_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_064613257.1|1464244_1465240_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_064613259.1|1465249_1467004_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064612987.1|1467009_1468155_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109510649.1|1468177_1470814_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_109510650.1|1472112_1472829_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_045913454.1|1472840_1473137_-	DUF4065 domain-containing protein	NA	I6R0L8	Salmonella_phage	59.3	1.6e-12
WP_109510651.1|1473247_1474657_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109510652.1|1474910_1476602_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_064612696.1|1476598_1476982_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_174197582.1|1477004_1477982_-	TraU family protein	NA	NA	NA	NA	NA
WP_174190469.1|1477982_1478156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510653.1|1478239_1478899_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_109510654.1|1478895_1481388_-	TraC family protein	NA	NA	NA	NA	NA
WP_109510655.1|1481368_1481689_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109510656.1|1481688_1483014_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109510642.1|1483052_1483388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613303.1|1483794_1484283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912835.1|1484279_1484831_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_045918854.1|1484830_1485166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420691.1|1485295_1485919_-|integrase	site-specific integrase	integrase	A0A088CD23	Shigella_phage	29.2	2.2e-11
WP_064612844.1|1486215_1486524_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_080503907.1|1487878_1488064_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_011944867.1|1488952_1489573_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	59.3	1.3e-59
WP_174197627.1|1491950_1492553_+|integrase	site-specific integrase	integrase	B6SD77	Bacteriophage	29.4	2.2e-13
1506023:1506041	attR	TCATAAGTTAAGAATGTTT	NA	NA	NA	NA
>prophage 11
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	1507739	1671410	2469803	integrase,transposase,portal	Streptococcus_phage(21.21%)	111	1593585:1593625	1683624:1683664
WP_064613369.1|1507739_1508672_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_081420698.1|1508656_1509751_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_052691741.1|1514657_1516595_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_045912945.1|1517282_1517738_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_045912944.1|1517831_1518368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912943.1|1518394_1518970_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	30.2	1.0e-07
WP_064612658.1|1521029_1521746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510733.1|1522638_1523142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510530.1|1523188_1523818_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	31.9	6.8e-13
WP_109510659.1|1524057_1525494_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.2	4.3e-71
WP_045912207.1|1528251_1530039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912206.1|1530170_1531361_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	37.4	1.1e-59
WP_012461133.1|1531379_1531646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945001.1|1532104_1532344_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_045912205.1|1532522_1534076_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_045912204.1|1535716_1536403_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_045912203.1|1536881_1537964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052691632.1|1538124_1538451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912200.1|1542316_1543498_-	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	22.5	6.2e-15
WP_162562992.1|1544574_1544733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510533.1|1546413_1546989_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	29.2	4.6e-08
WP_109510532.1|1547000_1547645_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	31.3	3.1e-13
WP_045912774.1|1547747_1548296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064612960.1|1548299_1549109_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	1.8e-18
WP_045913027.1|1550773_1551466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045913028.1|1551515_1552910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045913069.1|1553833_1555174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045913065.1|1560162_1560732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174197584.1|1561591_1562333_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_064612755.1|1564616_1565846_+|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	5.1e-20
WP_045918854.1|1565975_1566311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912835.1|1566310_1566862_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_064613303.1|1566858_1567347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081420583.1|1567753_1568089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510580.1|1568127_1569447_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_064612735.1|1569446_1569776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510579.1|1569756_1572249_+	TraC family protein	NA	NA	NA	NA	NA
WP_109510660.1|1572245_1572905_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_174190469.1|1572995_1573169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174197563.1|1573169_1574147_+	TraU family protein	NA	NA	NA	NA	NA
WP_045912829.1|1574169_1574553_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_109510661.1|1574549_1576241_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_064613397.1|1576237_1576936_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_064613395.1|1576932_1578234_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_081420700.1|1578233_1580870_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_064613393.1|1580882_1582022_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_064613391.1|1582027_1583782_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064613389.1|1583791_1584763_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109510662.1|1587748_1590550_-	AAA family ATPase	NA	A0A0H3UZA5	Geobacillus_virus	22.0	3.9e-07
WP_109510571.1|1591250_1592966_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
WP_064613088.1|1593176_1593632_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
1593585:1593625	attL	AAGAATGGCCTTCTCAATGTTCAGTATAAACTTGAGCTTGT	NA	NA	NA	NA
WP_162562879.1|1593715_1593859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613090.1|1593955_1595158_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_109510663.1|1595350_1596325_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.9	1.6e-85
WP_045915533.1|1596443_1597022_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	30.2	3.0e-07
WP_109510665.1|1599096_1599906_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	3.1e-18
WP_064613122.1|1599909_1600416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613120.1|1600462_1601107_-	ankyrin repeat domain-containing protein	NA	K7Y837	Megavirus	33.5	2.2e-14
WP_064613118.1|1601141_1601714_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	30.8	8.7e-07
WP_064613116.1|1601947_1603390_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.5	2.7e-73
WP_109510666.1|1603398_1604448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420657.1|1604603_1606316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613112.1|1606324_1607761_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	1.3e-72
WP_064613111.1|1607994_1608570_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	29.6	6.7e-07
WP_064613109.1|1608607_1609252_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	32.2	8.2e-14
WP_064613107.1|1609299_1609848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045917205.1|1609851_1610661_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.1	7.4e-20
WP_109510667.1|1611034_1611763_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_064613094.1|1611784_1612642_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_064612908.1|1612742_1613327_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	31.0	6.8e-07
WP_109510668.1|1613432_1614515_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.9	8.8e-85
WP_109510571.1|1615247_1616963_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
WP_174197629.1|1618727_1620464_+	AAA family ATPase	NA	A0A0H3UZA5	Geobacillus_virus	23.4	3.1e-07
WP_109510669.1|1623449_1624517_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109510670.1|1624526_1626281_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064612684.1|1626286_1627432_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_064612682.1|1627447_1630105_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_064612680.1|1630104_1631406_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_064612678.1|1631402_1632101_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_064612675.1|1632097_1633792_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_064612674.1|1633788_1634172_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_045912981.1|1635244_1636291_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_064612672.1|1637972_1638302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510671.1|1638301_1639630_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_081420583.1|1639668_1640004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612756.1|1640410_1640899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912835.1|1640895_1641447_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_064612544.1|1641446_1641782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461748.1|1641849_1642320_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_080946453.1|1642340_1642484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912527.1|1642530_1642758_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_081420558.1|1643129_1643696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420557.1|1644512_1645067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510596.1|1645697_1647413_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
WP_109510595.1|1647622_1648078_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109510594.1|1648147_1649158_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	3.1e-84
WP_109510593.1|1649279_1649855_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	30.2	1.0e-07
WP_109510672.1|1651937_1652747_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.4	9.1e-18
WP_045912774.1|1652750_1653299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510673.1|1653401_1654046_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	31.3	2.4e-13
WP_064612985.1|1654083_1654659_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	28.6	3.0e-07
WP_052691726.1|1659260_1659545_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_174197557.1|1659790_1660078_+|integrase	tyrosine-type recombinase/integrase	integrase	B6SD77	Bacteriophage	34.4	8.2e-06
WP_064612973.1|1660573_1660909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081420643.1|1661457_1661784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912939.1|1664687_1665338_+	SCO family protein	NA	NA	NA	NA	NA
WP_162563010.1|1665779_1665953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064612967.1|1668001_1668466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081420644.1|1668522_1669164_-|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	30.6	4.1e-13
WP_174197587.1|1669528_1670271_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080946515.1|1671092_1671410_-|transposase	transposase	transposase	NA	NA	NA	NA
1683624:1683664	attR	AAGAATGGCCTTCTCAATGTTCAGTATAAACTTGAGCTTGT	NA	NA	NA	NA
>prophage 12
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	1703616	1790220	2469803	integrase,transposase,tRNA	Streptococcus_phage(15.79%)	57	1702580:1702621	1760738:1760779
1702580:1702621	attL	ATTAGACCTCTTTCGAAACTGGTTAACGTAGTTCAAAATTAT	NA	NA	NA	NA
WP_109510681.1|1703616_1703790_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_052691671.1|1704159_1705428_-	ankyrin repeat domain-containing protein	NA	A0A068EG22	Pigeonpox_virus	32.7	1.3e-15
WP_045912397.1|1706051_1706903_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_012460998.1|1706909_1707974_-	rod shape-determining protein	NA	NA	NA	NA	NA
WP_052691669.1|1708074_1708353_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_162563011.1|1708327_1708642_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_045912396.1|1708761_1710753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912395.1|1711192_1715455_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_045912394.1|1716225_1718253_+	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_081420591.1|1719098_1719977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064612779.1|1720086_1721805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510683.1|1721813_1723250_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.8	3.2e-74
WP_064613076.1|1723484_1724060_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	30.4	2.3e-07
WP_064612746.1|1724094_1724739_+	ankyrin repeat domain-containing protein	NA	K7Y837	Megavirus	33.0	1.8e-13
WP_064613122.1|1724785_1725292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045913603.1|1725295_1726105_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.0	5.3e-18
WP_045915136.1|1726471_1726750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109455820.1|1726814_1727516_+	histidine kinase	NA	NA	NA	NA	NA
WP_109510751.1|1727744_1728224_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_109456066.1|1728711_1729173_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109510556.1|1729191_1729686_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_109510684.1|1729727_1730333_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	29.4	1.6e-06
WP_064612722.1|1731657_1733349_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_064612721.1|1733345_1733729_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_064612720.1|1734492_1735482_+	ankyrin repeat domain-containing protein	NA	Q70GS9	Fowlpox_virus	29.7	1.1e-09
WP_162562990.1|1737029_1737167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420607.1|1737967_1738744_-|integrase	site-specific integrase	integrase	A0A0U4JNS1	Bacillus_phage	28.5	1.6e-16
WP_045912527.1|1738878_1739106_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_081420558.1|1739475_1740042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912893.1|1742486_1743056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912894.1|1743308_1744301_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_045912895.1|1744363_1745635_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
WP_045912706.1|1747126_1748053_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	37.5	5.0e-36
WP_045912707.1|1748113_1750807_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.0	3.6e-26
WP_045912708.1|1750859_1752392_-	ADP/ATP carrier protein	NA	NA	NA	NA	NA
WP_045912709.1|1752757_1753615_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_045912710.1|1753616_1754906_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	2.0e-99
WP_011944753.1|1754883_1755651_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	38.7	8.0e-32
WP_045912713.1|1755826_1756393_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_045912711.1|1756399_1757197_+	ParA family protein	NA	A0A240F4U1	Ochrobactrum_phage	33.0	9.9e-17
WP_045912712.1|1757208_1758090_+	ParB/RepB/Spo0J family partition protein	NA	S5VTK0	Leptospira_phage	29.1	4.7e-12
WP_081420604.1|1758384_1758864_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_045912757.1|1761663_1763052_-	2-polyprenylphenol 6-hydroxylase	NA	A0A0R6PKQ6	Moraxella_phage	25.9	6.5e-32
1760738:1760779	attR	ATTAGACCTCTTTCGAAACTGGTTAACGTAGTTCAAAATTAT	NA	NA	NA	NA
WP_045912756.1|1763048_1763822_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_045912755.1|1764358_1764841_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_045912754.1|1764859_1766362_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_045912753.1|1766611_1769152_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	27.8	4.7e-28
WP_045912752.1|1769182_1769545_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_064612812.1|1772598_1774767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064612811.1|1775059_1775863_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	27.9	1.4e-18
WP_109510686.1|1778643_1779582_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	59.0	2.2e-84
WP_109510687.1|1779649_1780105_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109510688.1|1780402_1781644_+	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_109510689.1|1781689_1783252_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_064612548.1|1784421_1785429_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_109510690.1|1785438_1787193_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064613245.1|1789293_1790220_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	59.4	2.6e-85
>prophage 13
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	1802645	1873237	2469803	integrase,transposase,tRNA	Salmonella_phage(10.0%)	48	1837629:1837650	1884749:1884770
WP_109510692.1|1802645_1803593_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_064612763.1|1808678_1809395_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_064612762.1|1809521_1809968_-	DUF4065 domain-containing protein	NA	I6R0L8	Salmonella_phage	42.4	1.7e-21
WP_109510694.1|1811460_1813749_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_064612696.1|1816794_1817178_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_174197589.1|1817200_1818178_-	TraU family protein	NA	NA	NA	NA	NA
WP_174190469.1|1818178_1818352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612759.1|1818435_1819095_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_064612758.1|1821126_1821456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174197631.1|1821455_1822154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510695.1|1822825_1823152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612756.1|1823558_1824047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912835.1|1824043_1824595_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_045918854.1|1824594_1824930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174197622.1|1825059_1825611_-|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	29.7	1.7e-12
WP_174197592.1|1825982_1826291_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_109510680.1|1827089_1827665_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	29.2	1.0e-07
WP_109510679.1|1827702_1828347_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	32.4	4.8e-14
WP_109510678.1|1828449_1828998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510672.1|1829001_1829811_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.4	9.1e-18
WP_109510698.1|1831885_1832461_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	31.0	2.3e-07
WP_064612929.1|1832466_1832994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912927.1|1833500_1833869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612927.1|1835726_1836296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162563012.1|1836451_1836613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613247.1|1837031_1837487_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
1837629:1837650	attL	ACCTCTTTCGAAACTGGTTAAC	NA	NA	NA	NA
WP_109510571.1|1837840_1839556_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
WP_109510610.1|1841559_1841943_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_064612672.1|1845093_1845423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612856.1|1845422_1845818_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_109510700.1|1845832_1846321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045915450.1|1846870_1847167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420617.1|1847258_1847927_-|integrase	site-specific integrase	integrase	B6SD77	Bacteriophage	32.1	2.2e-09
WP_064612837.1|1848230_1848599_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_174197594.1|1850680_1851423_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_012460882.1|1852017_1853025_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_052691717.1|1853579_1853819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912762.1|1855166_1858394_-	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	27.2	3.2e-21
WP_045912761.1|1859442_1860837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612879.1|1862235_1862475_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_045912937.1|1863207_1866039_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_162563013.1|1866225_1866384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162563014.1|1866690_1866819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510701.1|1867062_1867885_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_109510702.1|1868449_1869273_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080946470.1|1869368_1870337_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	34.4	2.9e-39
WP_045912666.1|1870314_1872366_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_045912667.1|1872358_1873237_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
1884749:1884770	attR	GTTAACCAGTTTCGAAAGAGGT	NA	NA	NA	NA
>prophage 15
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	2158208	2262599	2469803	integrase,transposase,protease,tRNA	Pseudomonas_phage(14.29%)	52	2150972:2150989	2204808:2204825
2150972:2150989	attL	AAGCTAAACAACAATTGA	NA	NA	NA	NA
WP_162563017.1|2158208_2159225_-|integrase	site-specific integrase	integrase	Q9T1P3	Pseudomonas_phage	25.7	4.8e-16
WP_045912768.1|2160459_2161950_+	carboxypeptidase M32	NA	NA	NA	NA	NA
WP_045912767.1|2162053_2163421_-	magnesium transporter	NA	NA	NA	NA	NA
WP_045912770.1|2163607_2164627_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_045912766.1|2164646_2167166_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	38.3	6.3e-158
WP_052691718.1|2167785_2168517_-	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA	NA
WP_045913079.1|2170002_2171466_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_109510717.1|2173574_2175287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510718.1|2175295_2176732_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.4	2.5e-71
WP_109510530.1|2176971_2177601_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	31.9	6.8e-13
WP_109510733.1|2177647_2178151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510531.1|2178831_2179614_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_064612558.1|2179714_2180296_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	26.6	1.4e-07
WP_081420563.1|2181301_2181601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081420561.1|2182410_2185215_+	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	24.2	2.0e-08
WP_045912795.1|2186443_2187004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912796.1|2186981_2193641_+	hypothetical protein	NA	Q9JMP0	Wolbachia_phage	34.1	1.2e-38
WP_064612554.1|2193989_2194865_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_080946480.1|2198078_2198411_-	hypothetical protein	NA	A0A2H4N7Q8	Lake_Baikal_phage	34.0	4.3e-06
WP_045912794.1|2199583_2199892_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_162563018.1|2199866_2200103_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_162562995.1|2200042_2200192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420581.1|2200434_2200995_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012460827.1|2201010_2201979_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_109510721.1|2202110_2203016_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_064613309.1|2209003_2209999_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
2204808:2204825	attR	AAGCTAAACAACAATTGA	NA	NA	NA	NA
WP_081420569.1|2210050_2211145_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_045912952.1|2212381_2213182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510722.1|2216568_2218284_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.3	6.3e-85
WP_064612663.1|2218493_2218949_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_045912934.1|2220435_2222256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612658.1|2225638_2226355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510755.1|2227248_2227752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510530.1|2227798_2228428_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	31.9	6.8e-13
WP_109510723.1|2228667_2230104_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	37.8	7.4e-71
WP_012462330.1|2231799_2232585_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_045912855.1|2232619_2234410_-	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_045912856.1|2234601_2234991_-	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA	NA
WP_052691728.1|2235021_2235405_-	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
WP_045912456.1|2238161_2242280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912455.1|2243191_2243524_+	iron donor protein CyaY	NA	NA	NA	NA	NA
WP_045912454.1|2243507_2245244_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	25.8	5.6e-41
WP_045912453.1|2247663_2252169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912452.1|2252168_2254625_-	virB4 protein precursor	NA	NA	NA	NA	NA
WP_045912451.1|2254899_2255916_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_045912450.1|2255996_2257217_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_045912449.1|2257230_2257524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045912448.1|2257537_2258839_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_045912447.1|2259067_2260321_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.6	1.2e-120
WP_011944714.1|2260526_2261096_+	elongation factor P	NA	NA	NA	NA	NA
WP_045912446.1|2261092_2261878_+	extragenic suppressor protein SuhB	NA	NA	NA	NA	NA
WP_045912459.1|2261897_2262599_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
>prophage 16
NZ_LS398548	Orientia tsutsugamushi isolate Karp chromosome I	2469803	2277948	2348000	2469803	integrase,protease,transposase,tRNA	Streptococcus_phage(21.43%)	53	2323396:2323431	2356820:2356855
WP_045912413.1|2277948_2279157_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	K4JS34	Caulobacter_phage	31.2	6.1e-34
WP_045912414.1|2279153_2280050_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012460749.1|2280585_2280894_+	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_045912415.1|2281076_2281952_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_045912416.1|2282080_2282902_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_052691674.1|2282962_2284312_+	DNA recombination protein RmuC	NA	NA	NA	NA	NA
WP_045912417.1|2284421_2285483_+|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_045912418.1|2285495_2287814_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_045912419.1|2287836_2288163_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	46.6	2.0e-16
WP_011944475.1|2289233_2289359_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
WP_064612846.1|2290736_2291483_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_064612787.1|2292992_2294708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064612788.1|2294716_2296048_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.3	5.6e-65
WP_109510742.1|2298599_2299079_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_045913049.1|2299566_2300031_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_064612918.1|2300049_2300544_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_064612917.1|2300585_2301173_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	34.1	1.4e-07
WP_109510726.1|2301294_2302245_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	5.9e-85
WP_052691753.1|2302813_2303440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045912996.1|2303463_2305647_-	AHH domain-containing protein	NA	NA	NA	NA	NA
WP_125330222.1|2306971_2307931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109510727.1|2308216_2309929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109510728.1|2309937_2311386_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.1	1.8e-72
WP_064612587.1|2311618_2312194_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	31.9	2.3e-07
WP_064612913.1|2312228_2312873_+	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	33.0	1.7e-14
WP_064612912.1|2312920_2313469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064612911.1|2313472_2314282_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.4	3.1e-18
WP_064612908.1|2316365_2316950_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	31.0	6.8e-07
WP_064612907.1|2317055_2318066_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.9	6.3e-85
WP_064612906.1|2318133_2318589_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_109510571.1|2318798_2320514_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.3	2.8e-85
WP_109510729.1|2321214_2324016_+	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	25.1	1.7e-07
2323396:2323431	attL	GAGAAAGAACGGACAAAGACAACTGTTTTTAGTAAA	NA	NA	NA	NA
WP_174197638.1|2326228_2327323_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_064612903.1|2327374_2328418_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_064612902.1|2328427_2330182_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064612901.1|2330187_2331327_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_064612900.1|2331339_2333973_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_064612619.1|2333972_2335274_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_064612899.1|2335270_2335969_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_064612624.1|2335965_2337660_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_045912829.1|2337656_2338040_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_174197603.1|2338062_2339040_-	TraU family protein	NA	NA	NA	NA	NA
WP_174190469.1|2339040_2339214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612759.1|2339297_2339957_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_064612833.1|2339953_2342443_-	TraC family protein	NA	NA	NA	NA	NA
WP_045918856.1|2342423_2342753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081420616.1|2342752_2344078_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_081420583.1|2344116_2344452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612632.1|2344948_2345437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612831.1|2345433_2345985_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_064612830.1|2345984_2346320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064612829.1|2346387_2346858_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_064612828.1|2346860_2348000_-|integrase	site-specific integrase	integrase	A0A0U4JNS1	Bacillus_phage	27.0	2.0e-18
2356820:2356855	attR	GAGAAAGAACGGACAAAGACAACTGTTTTTAGTAAA	NA	NA	NA	NA
