assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900327235.1_UT176	NZ_LS398547	Orientia tsutsugamushi isolate UT176 chromosome I	1	222411-222529	1	CRISPRCasFinder	no		DEDDh	Orphan	TATGCCTTTAGCTATGCCTTTAG	23	2	11	222434-222458|222434-222458|222434-222458|222434-222458|222434-222458|222434-222458|222434-222458|222434-222458|222482-222506|222482-222506|222482-222506	NZ_LS398547.1_648933-648909|NZ_LS398547.1_738662-738686|NZ_LS398547.1_877184-877208|NZ_LS398547.1_907889-907913|NZ_LS398547.1_1625776-1625752|NZ_LS398547.1_480773-480749|NZ_LS398547.1_480785-480761|NZ_LS398547.1_1625788-1625764|NZ_LS398547.1_161255-161231|NZ_LS398547.1_314311-314335|NZ_LS398547.1_1701449-1701473	NA	2	2	Orphan	DEDDh	NA|69aa|up_8|NZ_LS398547.1_209268_209475_+,NA|93aa|down_8|NZ_LS398547.1_236304_236583_-	NA|220aa|up_9|NZ_LS398547.1_208525_209185_+	TIGR02743, hypothetical_protein, type-F conjugative transfer system protein TraW	NA|69aa|up_8|NZ_LS398547.1_209268_209475_+	NA	NA|326aa|up_7|NZ_LS398547.1_209475_210453_+	pfam06834, TraU, TraU protein	NA|107aa|up_6|NZ_LS398547.1_210539_210860_+	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|564aa|up_5|NZ_LS398547.1_210856_212548_+	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation	NA|401aa|up_4|NZ_LS398547.1_212799_214002_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|187aa|up_3|NZ_LS398547.1_214112_214673_+	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown]	NA|239aa|up_2|NZ_LS398547.1_214684_215401_+	pfam13728, TraF, F plasmid transfer operon protein	NA|379aa|up_1|NZ_LS398547.1_219370_220507_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|401aa|up_0|NZ_LS398547.1_221060_222263_+	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|365aa|down_0|NZ_LS398547.1_223379_224474_-	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|937aa|down_1|NZ_LS398547.1_226310_229121_-	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|256aa|down_2|NZ_LS398547.1_230194_230962_+	sd00006, TPR, Tetratricopeptide repeat	NA|313aa|down_3|NZ_LS398547.1_231561_232500_-	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|202aa|down_4|NZ_LS398547.1_232621_233227_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|165aa|down_5|NZ_LS398547.1_233268_233763_-	smart00387, HATPase_c, Histidine kinase-like ATPases	NA|159aa|down_6|NZ_LS398547.1_234733_235210_-	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS	NA|234aa|down_7|NZ_LS398547.1_235538_236240_-	pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA|93aa|down_8|NZ_LS398547.1_236304_236583_-	NA	NA|270aa|down_9|NZ_LS398547.1_236949_237759_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)
GCF_900327235.1_UT176	NZ_LS398547	Orientia tsutsugamushi isolate UT176 chromosome I	2	632111-632199	2	CRISPRCasFinder	no		DEDDh	Orphan	AAGTTAAATCTAATCTAGAAACTGAGTTAAAA	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|98aa|up_7|NZ_LS398547.1_612338_612632_-,NA|1506aa|up_3|NZ_LS398547.1_617690_622208_+,NA|261aa|down_6|NZ_LS398547.1_644275_645058_+	NA|418aa|up_9|NZ_LS398547.1_609542_610796_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|434aa|up_8|NZ_LS398547.1_611023_612325_-	PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional	NA|98aa|up_7|NZ_LS398547.1_612338_612632_-	NA	NA|407aa|up_6|NZ_LS398547.1_612645_613866_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|339aa|up_5|NZ_LS398547.1_613946_614963_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|818aa|up_4|NZ_LS398547.1_615237_617691_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|1506aa|up_3|NZ_LS398547.1_617690_622208_+	NA	NA|289aa|up_2|NZ_LS398547.1_623087_623955_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|579aa|up_1|NZ_LS398547.1_627542_629279_-	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein	NA|111aa|up_0|NZ_LS398547.1_629262_629595_-	pfam01491, Frataxin_Cyay, Frataxin-like domain	NA|128aa|down_0|NZ_LS398547.1_637252_637636_+	cd03499, SQR_TypeC_SdhC, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins	NA|130aa|down_1|NZ_LS398547.1_637666_638056_+	cd03495, SQR_TypeC_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E	NA|597aa|down_2|NZ_LS398547.1_638247_640038_+	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|262aa|down_3|NZ_LS398547.1_640072_640858_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|289aa|down_4|NZ_LS398547.1_641590_642458_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|237aa|down_5|NZ_LS398547.1_643508_644219_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|261aa|down_6|NZ_LS398547.1_644275_645058_+	NA	NA|552aa|down_7|NZ_LS398547.1_645086_646742_-	PHA03100, PHA03100, ankyrin repeat protein; Provisional	NA|365aa|down_8|NZ_LS398547.1_646928_648023_+	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|336aa|down_9|NZ_LS398547.1_648074_649082_+	pfam04754, Transposase_31, Putative transposase, YhgA-like
GCF_900327235.1_UT176	NZ_LS398547	Orientia tsutsugamushi isolate UT176 chromosome I	3	745945-746037	3	CRISPRCasFinder	no		DEDDh	Orphan	AGCTTTATGCCTTCAGCTTTACCTTCAGCTTTA	33	1	7	745978-746004|745978-746004|745978-746004|745978-746004|745978-746004|745978-746004|745978-746004	NZ_LS398547.1_455046-455020|NZ_LS398547.1_330741-330715|NZ_LS398547.1_746038-746064|NZ_LS398547.1_884855-884881|NZ_LS398547.1_914020-914046|NZ_LS398547.1_1110227-1110253|NZ_LS398547.1_1449519-1449545	NA	1	1	Orphan	DEDDh	NA,NA|88aa|down_2|NZ_LS398547.1_749912_750176_-,NA|168aa|down_4|NZ_LS398547.1_751356_751860_-	NA|326aa|up_9|NZ_LS398547.1_729417_730395_+	pfam06834, TraU, TraU protein	NA|130aa|up_8|NZ_LS398547.1_730417_730807_+	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|367aa|up_7|NZ_LS398547.1_730803_731904_+	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation	NA|212aa|up_6|NZ_LS398547.1_731861_732497_+	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation	NA|344aa|up_5|NZ_LS398547.1_735730_736762_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|146aa|up_4|NZ_LS398547.1_738536_738974_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|323aa|up_3|NZ_LS398547.1_739184_740153_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|187aa|up_2|NZ_LS398547.1_740168_740729_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|365aa|up_1|NZ_LS398547.1_740780_741875_-	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|152aa|up_0|NZ_LS398547.1_745315_745771_+	pfam06412, TraD, Conjugal transfer protein TraD	NA|197aa|down_0|NZ_LS398547.1_746943_747534_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|165aa|down_1|NZ_LS398547.1_747575_748070_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|88aa|down_2|NZ_LS398547.1_749912_750176_-	NA	NA|270aa|down_3|NZ_LS398547.1_750543_751353_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|168aa|down_4|NZ_LS398547.1_751356_751860_-	NA	NA|189aa|down_5|NZ_LS398547.1_751962_752529_-	sd00045, ANK, ankyrin repeats	NA|483aa|down_6|NZ_LS398547.1_752826_754275_-	PRK09165, PRK09165, replicative DNA helicase; Provisional	NA|572aa|down_7|NZ_LS398547.1_754283_755999_-	pfam11638, DnaA_N, DnaA N-terminal domain	NA|127aa|down_8|NZ_LS398547.1_757974_758355_+	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|521aa|down_9|NZ_LS398547.1_758351_759914_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed
GCF_900327235.1_UT176	NZ_LS398547	Orientia tsutsugamushi isolate UT176 chromosome I	4	1087360-1087430	4	CRISPRCasFinder	no		DEDDh	Orphan	CCTTCGGCTTTACCTTCAGCTTT	23	1	5	1087383-1087407|1087383-1087407|1087383-1087407|1087383-1087407|1087383-1087407	NZ_LS398547.1_884842-884866|NZ_LS398547.1_914007-914031|NZ_LS398547.1_1110214-1110238|NZ_LS398547.1_746025-746049|NZ_LS398547.1_1449506-1449530	NA	1	1	Orphan	DEDDh	NA|97aa|up_0|NZ_LS398547.1_1086745_1087036_+,NA|168aa|down_3|NZ_LS398547.1_1093736_1094240_-	NA|389aa|up_9|NZ_LS398547.1_1071706_1072873_-	pfam14441, OTT_1508_deam, OTT_1508-like deaminase	NA|419aa|up_8|NZ_LS398547.1_1072891_1074148_-	sd00045, ANK, ankyrin repeats	NA|229aa|up_7|NZ_LS398547.1_1075418_1076105_+	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation	NA|233aa|up_6|NZ_LS398547.1_1076101_1076800_+	pfam13728, TraF, F plasmid transfer operon protein	NA|164aa|up_5|NZ_LS398547.1_1078099_1078591_+	PRK13735, PRK13735, conjugal transfer mating pair stabilization protein TraG; Provisional	NA|323aa|up_4|NZ_LS398547.1_1080066_1081035_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|138aa|up_3|NZ_LS398547.1_1081688_1082102_-	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|154aa|up_2|NZ_LS398547.1_1084402_1084864_+	pfam06412, TraD, Conjugal transfer protein TraD	NA|243aa|up_1|NZ_LS398547.1_1084906_1085635_-	sd00045, ANK, ankyrin repeats	NA|97aa|up_0|NZ_LS398547.1_1086745_1087036_+	NA	NA|193aa|down_0|NZ_LS398547.1_1088301_1088880_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|289aa|down_1|NZ_LS398547.1_1091286_1092154_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|273aa|down_2|NZ_LS398547.1_1092914_1093733_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|168aa|down_3|NZ_LS398547.1_1093736_1094240_-	NA	NA|289aa|down_4|NZ_LS398547.1_1095903_1096771_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|382aa|down_5|NZ_LS398547.1_1097994_1099140_+	sd00006, TPR, Tetratricopeptide repeat	NA|585aa|down_6|NZ_LS398547.1_1099145_1100900_+	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|332aa|down_7|NZ_LS398547.1_1100909_1101905_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|365aa|down_8|NZ_LS398547.1_1101956_1103051_-	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|266aa|down_9|NZ_LS398547.1_1104883_1105681_-	pfam13362, Toprim_3, Toprim domain
GCF_900327235.1_UT176	NZ_LS398547	Orientia tsutsugamushi isolate UT176 chromosome I	5	1278853-1278930	5	CRISPRCasFinder	no		DEDDh	Orphan	TGAAGGCAGAGCTGAAGGTATAGAGATTGG	30	1	26	1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900|1278883-1278900	NZ_LS398547.1_222534-222517|NZ_LS398547.1_738702-738685|NZ_LS398547.1_877224-877207|NZ_LS398547.1_907929-907912|NZ_LS398547.1_1079470-1079453|NZ_LS398547.1_1625736-1625753|NZ_LS398547.1_161203-161220|NZ_LS398547.1_314363-314346|NZ_LS398547.1_648893-648910|NZ_LS398547.1_1101123-1101106|NZ_LS398547.1_1505644-1505661|NZ_LS398547.1_1701501-1701484|NZ_LS398547.1_61370-61353|NZ_LS398547.1_161239-161256|NZ_LS398547.1_314327-314310|NZ_LS398547.1_330730-330747|NZ_LS398547.1_455035-455052|NZ_LS398547.1_480733-480750|NZ_LS398547.1_648857-648874|NZ_LS398547.1_884866-884849|NZ_LS398547.1_914031-914014|NZ_LS398547.1_1101075-1101058|NZ_LS398547.1_1110238-1110221|NZ_LS398547.1_1505692-1505709|NZ_LS398547.1_1701465-1701448|NZ_LS398547.1_1780261-1780244	NA	1	1	Orphan	DEDDh	NA,NA|110aa|down_6|NZ_LS398547.1_1293266_1293596_-,NA|109aa|down_8|NZ_LS398547.1_1294969_1295296_-,NA|159aa|down_9|NZ_LS398547.1_1295796_1296273_-	NA|802aa|up_9|NZ_LS398547.1_1265639_1268045_-	PRK14939, gyrB, DNA gyrase subunit B; Provisional	NA|287aa|up_8|NZ_LS398547.1_1268177_1269038_+	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|110aa|up_7|NZ_LS398547.1_1269590_1269920_+	PRK12670, PRK12670, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|197aa|up_6|NZ_LS398547.1_1269916_1270507_+	PRK12507, PRK12507, putative monovalent cation/H+ antiporter subunit B; Reviewed	NA|145aa|up_5|NZ_LS398547.1_1270527_1270962_+	PRK12507, PRK12507, putative monovalent cation/H+ antiporter subunit B; Reviewed	NA|134aa|up_4|NZ_LS398547.1_1270939_1271341_+	PRK07375, PRK07375, Na+/H+ antiporter subunit C	NA|497aa|up_3|NZ_LS398547.1_1271333_1272824_+	PRK06591, PRK06591, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|491aa|up_2|NZ_LS398547.1_1272833_1274306_+	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|120aa|up_1|NZ_LS398547.1_1277179_1277539_-	cd11532, NTP-PPase_COG4997, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|109aa|up_0|NZ_LS398547.1_1277519_1277846_-	TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein	NA|381aa|down_0|NZ_LS398547.1_1280840_1281983_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|239aa|down_1|NZ_LS398547.1_1285949_1286666_-	pfam13728, TraF, F plasmid transfer operon protein	NA|267aa|down_2|NZ_LS398547.1_1286860_1287661_-	sd00045, ANK, ankyrin repeats	NA|128aa|down_3|NZ_LS398547.1_1289508_1289892_-	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|301aa|down_4|NZ_LS398547.1_1289915_1290818_-	pfam06834, TraU, TraU protein	NA|828aa|down_5|NZ_LS398547.1_1290802_1293286_-	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|110aa|down_6|NZ_LS398547.1_1293266_1293596_-	NA	NA|444aa|down_7|NZ_LS398547.1_1293595_1294927_-	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS)	NA|109aa|down_8|NZ_LS398547.1_1294969_1295296_-	NA	NA|159aa|down_9|NZ_LS398547.1_1295796_1296273_-	NA
