The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992492	Vibrio cholerae strain 4295STDY6534248 chromosome 1	3041945	647262	653879	3041945		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|647262_648396_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_000366574.1|648407_649658_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|649757_650207_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001131994.1|650232_651336_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000493874.1|651340_651994_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|652034_653144_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|653408_653879_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_LT992492	Vibrio cholerae strain 4295STDY6534248 chromosome 1	3041945	1465163	1507171	3041945	coat	Vibrio_phage(47.06%)	37	NA	NA
WP_001161489.1|1465163_1465331_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000005769.1|1466529_1467081_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001881266.1|1467257_1468826_+	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000512956.1|1468845_1469115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001052672.1|1469244_1469937_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1470014_1470182_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000170634.1|1470174_1470759_+	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_000693566.1|1471248_1471587_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1471712_1472792_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_162496882.1|1472793_1473144_+	hypothetical protein	NA	U5TMH5	Satellite_phage	99.1	1.8e-63
WP_000053920.1|1473237_1473462_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_000693566.1|1473973_1474312_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1474437_1475517_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_001911548.1|1475518_1475878_+	hypothetical protein	NA	A0A0N9HE73	Vibrio_phage	100.0	4.4e-65
WP_000493022.1|1476013_1476262_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001268534.1|1476368_1477556_+|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000979342.1|1477552_1477846_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_000021616.1|1477842_1479042_+	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_001881225.1|1479133_1479910_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_088125885.1|1479906_1480281_+	cholera enterotoxin binding subunit CtxB	NA	D1GID8	Vibrio_virus	100.0	5.9e-65
WP_000201563.1|1481194_1481374_-	hypothetical protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
WP_000743997.1|1481504_1482584_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_162496883.1|1482585_1482942_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	99.2	2.2e-64
WP_053029846.1|1483077_1483326_+	hypothetical protein	NA	A0A0N7F140	Vibrio_phage	98.8	7.5e-32
WP_162496884.1|1483432_1484620_+|coat	minor coat protein pIII	coat	Q8LTP3	Vibrio_virus	99.7	2.4e-192
WP_000979342.1|1484616_1484910_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_088126137.1|1484906_1486106_+	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	99.2	1.4e-237
WP_001881225.1|1486197_1486974_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_053029863.1|1486970_1487345_+	cholera enterotoxin binding subunit CtxB	NA	D1GID0	Vibrio_virus	100.0	1.3e-64
WP_000201563.1|1488258_1488438_-	hypothetical protein	NA	Q9MBU8	Vibrio_virus	100.0	6.4e-25
WP_000743997.1|1488568_1489648_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_162496883.1|1489649_1490006_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	99.2	2.2e-64
WP_053029846.1|1490141_1490390_+	hypothetical protein	NA	A0A0N7F140	Vibrio_phage	98.8	7.5e-32
WP_162496885.1|1490496_1491684_+|coat	minor coat protein pIII	coat	Q8LTP3	Vibrio_virus	99.5	5.3e-192
WP_000979342.1|1491680_1491974_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_103765839.1|1491970_1493170_+	zonula occludens toxin ZOT	NA	Q93AU9	Vibrio_virus	99.5	1.1e-237
WP_000517826.1|1493533_1507171_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
>prophage 3
NZ_LT992492	Vibrio cholerae strain 4295STDY6534248 chromosome 1	3041945	2248935	2256128	3041945		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2248935_2249364_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107237.1|2249567_2250857_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_000872176.1|2251076_2251271_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2251319_2251658_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196560.1|2251671_2253522_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001105747.1|2253545_2254061_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2254109_2254433_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2254493_2254877_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775253.1|2254913_2256128_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 4
NZ_LT992492	Vibrio cholerae strain 4295STDY6534248 chromosome 1	3041945	2572054	2579278	3041945		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279365.1|2572054_2572942_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_001894770.1|2573209_2575798_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_000116737.1|2575890_2576898_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177568.1|2576971_2577907_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2577906_2578533_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000698379.1|2578525_2579278_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
