The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	317331	387695	2904888	head,protease,tail,capsid,terminase,transposase,holin,portal,integrase	Staphylococcus_phage(78.57%)	90	336601:336616	388875:388890
WP_000197638.1|317331_318075_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|318249_318534_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|318609_320226_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000201398.1|320766_320946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000216896.1|320942_321569_+	hypothetical protein	NA	C8CH40	Staphylococcus_phage	44.5	2.4e-42
WP_001045074.1|322107_323415_-	potassium transporter KtrB	NA	NA	NA	NA	NA
WP_000206618.1|323797_325021_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791397.1|325452_326508_+	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	35.4	8.7e-37
WP_000595612.1|326529_327546_+	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	29.3	1.1e-25
WP_001814397.1|328688_329726_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.1	6.5e-178
WP_000440838.1|329918_330623_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	100.0	4.6e-127
WP_000705238.1|330762_330930_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000837517.1|331085_331784_-	potassium channel family protein	NA	A0A1B0Y2S3	Lactobacillus_phage	29.8	4.4e-13
WP_031763806.1|331965_332598_-	helix-turn-helix domain-containing protein	NA	Q4ZB06	Staphylococcus_virus	90.4	1.9e-103
WP_000192116.1|332751_332979_+	helix-turn-helix transcriptional regulator	NA	Q4ZB05	Staphylococcus_virus	98.7	3.5e-36
WP_114642533.1|333001_333790_+	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	99.2	1.0e-143
WP_001566738.1|333806_334001_+	hypothetical protein	NA	Q4ZDS1	Staphylococcus_virus	100.0	1.0e-23
WP_000768245.1|333995_334352_-	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_000389905.1|334401_334593_+	hypothetical protein	NA	Q4ZDR9	Staphylococcus_virus	100.0	2.1e-26
WP_000801108.1|334594_334822_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_001120935.1|334880_335201_+	DUF771 domain-containing protein	NA	Q4ZDR7	Staphylococcus_virus	100.0	1.5e-56
WP_000066014.1|335197_335359_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	98.1	9.5e-20
WP_031807559.1|335451_335754_+	DUF2482 family protein	NA	A1KWZ5	Staphylococcus_virus	63.6	1.2e-26
WP_031807558.1|335757_336018_+	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	95.3	3.2e-41
WP_001205732.1|336026_336290_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_031928235.1|336298_338242_+	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	92.6	0.0e+00
336601:336616	attL	AAATCAAAAAACGAAT	NA	NA	NA	NA
WP_000138475.1|338243_339164_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071621397.1|339244_339862_+	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000934759.1|339862_340333_+	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_000148300.1|340362_341247_+	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	96.6	1.9e-138
WP_000338530.1|341253_341472_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401960.1|341480_341885_+	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_031928234.1|341897_342269_+	phage protein	NA	A7TWA7	Staphylococcus_phage	97.6	3.2e-55
WP_031928233.1|342269_342518_+	phage protein	NA	A0A1W6JPI5	Staphylococcus_phage	98.8	1.4e-41
WP_061731534.1|342558_342792_+	DUF1024 family protein	NA	A0A2H4PQK1	Staphylococcus_phage	96.1	8.9e-35
WP_000185636.1|342799_343309_+	dUTP pyrophosphatase	NA	A0A1X9H051	Staphylococcus_phage	100.0	6.6e-91
WP_001282074.1|343345_343591_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195782.1|343587_343776_+	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001125015.1|343750_343951_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000237868.1|343953_344103_+	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	98.0	1.1e-17
WP_000265043.1|344102_344303_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|344330_344747_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988330.1|344978_345278_+	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|345407_345752_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625096.1|345748_347410_+|terminase	terminase large subunit	terminase	A0A075M4D3	Staphylococcus_phage	100.0	0.0e+00
WP_000025266.1|347425_348613_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.0e-219
WP_000861912.1|348596_349334_+|protease	Clp protease ClpP	protease	A0A1W6JPK0	Staphylococcus_phage	99.2	5.2e-129
WP_031897300.1|349356_350502_+|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	99.5	3.6e-214
WP_000238236.1|350521_350806_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|350795_351080_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|351063_351426_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114341.1|351422_351827_+	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000565498.1|351823_352231_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268736.1|352231_352876_+|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	100.0	6.5e-120
WP_071621395.1|352917_353142_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|353191_353542_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_001549167.1|353592_353730_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_103152412.1|353786_358307_+|tail	phage tail tape measure protein	tail	Q6R868	Staphylococcus_virus	99.2	0.0e+00
WP_062832900.1|358303_359788_+|tail	phage tail family protein	tail	A0EX04	Staphylococcus_phage	99.6	2.2e-296
WP_031889405.1|359803_363589_+	phage minor structural protein	NA	Q6R866	Staphylococcus_virus	98.6	0.0e+00
WP_001153681.1|363578_363731_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|363777_364065_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|364122_364419_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|364568_364745_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|364797_364905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|364956_365211_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|365222_365978_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|366168_366660_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000727649.1|367739_368189_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|368873_369224_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|369276_369537_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|369847_370027_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_000669725.1|370984_373054_+	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_001068535.1|373324_374611_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|374810_374909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681966.1|375150_375327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|375584_375965_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991294.1|375961_376858_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	6.5e-17
WP_000645735.1|376858_377539_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|377535_378408_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221650.1|378407_379148_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|379211_379775_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966291.1|379895_380420_+	membrane protein	NA	NA	NA	NA	NA
WP_001033968.1|380479_381037_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713062.1|381033_381876_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188070.1|381932_382973_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|383423_383597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031775283.1|384142_385255_+|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.0	8.7e-11
WP_031775282.1|385257_387321_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_031775281.1|387329_387695_+|transposase	transposase	transposase	NA	NA	NA	NA
388875:388890	attR	ATTCGTTTTTTGATTT	NA	NA	NA	NA
>prophage 2
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	512154	560000	2904888	transposase,protease,tRNA	Staphylococcus_phage(91.89%)	47	NA	NA
WP_000196442.1|512154_512436_+|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
WP_000070813.1|512884_513268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|513278_513455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000864133.1|513825_514383_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000414230.1|514580_515153_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000627549.1|515250_515595_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000669036.1|515635_516262_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000070644.1|516337_517333_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_001825423.1|517413_518076_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_016187363.1|518378_518834_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_000348381.1|518992_520471_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_000778553.1|520475_521477_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000718107.1|521473_521731_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|521796_522270_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_016187361.1|522274_523021_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000109913.1|523317_524910_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_000933822.1|525281_526475_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366160.1|526599_527508_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_114642535.1|527719_528553_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	1.5e-156
WP_000623484.1|528802_529156_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_001200546.1|529152_529518_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000091443.1|529772_530075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|530333_531047_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000492903.1|531609_532230_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001168915.1|532396_533032_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001030474.1|533329_533773_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001153741.1|533759_534203_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671058.1|534315_534786_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_000384171.1|534984_535209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032832.1|535484_536339_+	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989103.1|536425_537718_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_000221190.1|537717_538032_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_001261672.1|538674_540177_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000077346.1|540657_541701_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_000493892.1|541707_542340_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159034.1|542350_543532_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_001008555.1|543544_544003_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001196354.1|544130_545132_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_014937042.1|545243_545363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|545365_546193_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|546765_547167_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764426.1|547285_547849_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000526541.1|547845_548799_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_001025064.1|548908_550090_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_001807819.1|550377_552795_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_000836471.1|552816_553128_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001050515.1|553451_560000_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
>prophage 3
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	695210	704253	2904888	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005766.1|695210_696215_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019177.1|696216_697242_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|697264_698404_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|698422_698683_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749801.1|698957_701237_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595008.1|701439_703713_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000364542.1|703734_704253_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 4
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	773677	781989	2904888	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217255.1|773677_775477_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
WP_001283055.1|775700_776807_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624563.1|776937_777615_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683941.1|777617_778718_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_001062170.1|778831_780178_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000924214.1|780187_781078_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|781203_781989_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 5
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	1056779	1061967	2904888		Staphylococcus_phage(66.67%)	8	NA	NA
WP_001215406.1|1056779_1056953_+	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
WP_000974166.1|1057016_1057601_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_000477489.1|1058032_1058449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1058959_1059145_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|1059537_1059648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002341.1|1060348_1060555_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_074347689.1|1060855_1061083_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001807853.1|1061769_1061967_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
>prophage 6
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	1318314	1326787	2904888		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238668.1|1318314_1318881_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
WP_000030815.1|1318883_1319912_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000483707.1|1319904_1321389_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000032750.1|1321367_1323557_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000666799.1|1323549_1324221_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848351.1|1324222_1324486_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174055.1|1324485_1325190_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_001010409.1|1325193_1326318_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001807816.1|1326304_1326787_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 7
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	1346570	1371037	2904888	holin,bacteriocin,protease	Planktothrix_phage(50.0%)	27	NA	NA
WP_001088778.1|1346570_1347752_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284455.1|1347789_1348119_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|1348356_1349178_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150215.1|1349170_1349974_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526673.1|1349960_1351634_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190615.1|1351620_1352982_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|1353163_1354102_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620945.1|1354152_1354704_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867362.1|1354868_1355084_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_001794249.1|1355147_1355279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081332.1|1355327_1356287_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1356776_1357133_+	DoxX family protein	NA	NA	NA	NA	NA
WP_157958947.1|1357221_1357410_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001796515.1|1357499_1357790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571192.1|1357877_1358519_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_000668623.1|1358515_1358836_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870811.1|1358838_1360803_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000790905.1|1360846_1361131_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_099119695.1|1361765_1361843_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_001033867.1|1362142_1362745_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|1362759_1362936_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668814.1|1363134_1364121_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|1364201_1364420_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|1364629_1365199_+	competence protein ComK	NA	NA	NA	NA	NA
WP_031795489.1|1365687_1367199_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021872.1|1367337_1368696_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_014937014.1|1368712_1371037_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
>prophage 8
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	1425507	1448732	2904888	integrase	Streptococcus_phage(94.74%)	23	1421216:1421233	1460259:1460276
1421216:1421233	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
WP_000420682.1|1425507_1425822_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|1425837_1426224_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|1426252_1427638_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|1427640_1427793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|1427815_1429021_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_001009056.1|1429063_1429285_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|1429401_1429899_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|1429873_1430380_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|1430363_1432811_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000804748.1|1432813_1434991_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|1434987_1435989_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224318.1|1435985_1436918_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_001814923.1|1437162_1437279_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691736.1|1437294_1439214_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_000336323.1|1439332_1439500_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|1439559_1439913_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|1440417_1440840_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|1440836_1441067_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|1441527_1441731_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|1441812_1443030_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000902814.1|1443294_1443684_-	YisL family protein	NA	NA	NA	NA	NA
WP_000670757.1|1444010_1444913_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000154905.1|1445078_1448732_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
1460259:1460276	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 9
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	1497925	1543887	2904888	head,plate,tail,capsid,terminase,holin,portal,integrase	Staphylococcus_phage(70.15%)	71	1491203:1491218	1549012:1549027
1491203:1491218	attL	CTTTTGGTAATTCTTT	NA	NA	NA	NA
WP_015980424.1|1497925_1499098_-	hypothetical protein	NA	Q9MBN0	Staphylococcus_prophage	100.0	2.0e-215
WP_000273396.1|1499111_1499531_-	hypothetical protein	NA	Q9MBN1	Staphylococcus_prophage	100.0	8.7e-81
WP_000861038.1|1500105_1500861_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_016187459.1|1500872_1501127_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	98.8	1.2e-40
WP_031867673.1|1501609_1503484_-	glucosaminidase domain-containing protein	NA	W5R999	Staphylococcus_phage	97.6	0.0e+00
WP_000466752.1|1503620_1503920_-	DUF2951 family protein	NA	B7T0E7	Staphylococcus_virus	100.0	2.5e-42
WP_001800921.1|1503960_1504134_-	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_031867674.1|1504143_1504521_-	DUF2977 domain-containing protein	NA	B7T0E5	Staphylococcus_virus	96.0	6.4e-59
WP_031867675.1|1504520_1506344_-|plate	phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	95.4	2.4e-284
WP_031867676.1|1506343_1508242_-	hypothetical protein	NA	W5R996	Staphylococcus_phage	98.1	0.0e+00
WP_001144705.1|1508254_1510141_-|tail	phage tail protein	tail	W5RAP4	Staphylococcus_phage	99.8	0.0e+00
WP_000560199.1|1510151_1511087_-|tail	phage tail family protein	tail	A0A0H4J355	Staphylococcus_phage	100.0	4.8e-180
WP_031867677.1|1511101_1514071_-|terminase	terminase	terminase	R4IG82	Staphylococcus_phage	89.6	4.6e-269
WP_000204079.1|1514073_1514415_-	hypothetical protein	NA	W5R8J4	Staphylococcus_phage	100.0	3.5e-56
WP_000141084.1|1514435_1514930_-	hypothetical protein	NA	A0A0H4IPX9	Staphylococcus_phage	100.0	2.5e-87
WP_000046067.1|1514991_1515552_-	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_000270194.1|1515538_1515976_-	DUF3168 domain-containing protein	NA	A0A0H4J350	Staphylococcus_phage	100.0	7.9e-77
WP_001151336.1|1515988_1516402_-	HK97 gp10 family phage protein	NA	A0A0H4IPA6	Staphylococcus_phage	100.0	3.4e-77
WP_031794845.1|1516388_1516724_-|head	phage head closure protein	head	A0A0H4ISR6	Staphylococcus_phage	100.0	5.2e-60
WP_000338934.1|1516716_1517031_-|head,tail	phage head-tail connector protein	head,tail	A0A0H4IPX4	Staphylococcus_phage	100.0	2.6e-53
WP_000278802.1|1517030_1517357_-	Rho termination factor N-terminal domain-containing protein	NA	A0A0H4ITX8	Staphylococcus_phage	100.0	1.2e-50
WP_001135533.1|1517373_1518198_-|capsid	N4-gp56 family major capsid protein	capsid	A0A0H4J347	Staphylococcus_phage	100.0	4.3e-148
WP_000366936.1|1518218_1518815_-	phage scaffolding protein	NA	A0A0H4IP83	Staphylococcus_phage	100.0	5.7e-102
WP_049948321.1|1518912_1519893_-|head	phage head morphogenesis protein	head	Q4ZAW9	Staphylococcus_virus	98.5	5.6e-179
WP_001159669.1|1519831_1521310_-|portal	phage portal protein	portal	Q4ZB45	Staphylococcus_virus	99.6	4.3e-284
WP_001807202.1|1521263_1522472_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0H4ITX6	Staphylococcus_phage	100.0	1.0e-235
WP_031867679.1|1522464_1522959_-|terminase	terminase	terminase	R4IH30	Staphylococcus_phage	98.8	1.6e-73
WP_000286968.1|1523311_1523713_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_025174881.1|1523713_1523887_-	transcriptional regulator	NA	Q4ZAX6	Staphylococcus_virus	91.2	4.6e-20
WP_001623479.1|1523886_1524273_-	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	98.4	3.4e-63
WP_000608283.1|1524262_1524499_-	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	100.0	3.6e-36
WP_000141259.1|1524491_1524695_-	hypothetical protein	NA	A7TWH9	Staphylococcus_phage	100.0	8.8e-31
WP_031867680.1|1524691_1524898_-	DUF1381 domain-containing protein	NA	A7TWH8	Staphylococcus_phage	98.5	2.9e-29
WP_031807824.1|1524934_1525468_-	dUTP diphosphatase	NA	W5R8N7	Staphylococcus_phage	99.4	3.0e-94
WP_000889682.1|1525482_1525644_-	hypothetical protein	NA	W5R9K6	Staphylococcus_phage	100.0	1.4e-23
WP_000028424.1|1525644_1525818_-	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_031867695.1|1525807_1526059_-	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	97.6	5.4e-38
WP_031765535.1|1526051_1526417_-	hypothetical protein	NA	A7YGS3	Staphylococcus_virus	94.2	4.3e-60
WP_015994748.1|1526818_1527025_-	hypothetical protein	NA	B7T0H4	Staphylococcus_virus	100.0	7.8e-35
WP_015994747.1|1527038_1527728_-	N-6 DNA methylase	NA	B7T0H3	Staphylococcus_virus	100.0	6.1e-132
WP_015994746.1|1527724_1527925_-	hypothetical protein	NA	B7T0H2	Staphylococcus_virus	100.0	3.7e-29
WP_015994745.1|1527927_1528185_-	DUF3310 domain-containing protein	NA	B7T0H1	Staphylococcus_virus	100.0	7.5e-43
WP_031794870.1|1528184_1528544_-	phage protein	NA	Q4ZBU0	Staphylococcus_virus	98.3	3.8e-61
WP_000101252.1|1528671_1528977_-	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_001187243.1|1528977_1529163_-	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_031872375.1|1529167_1529572_-	DUF1064 domain-containing protein	NA	Q6R835	Staphylococcus_virus	99.3	3.5e-71
WP_001123688.1|1529581_1529803_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_031794786.1|1529805_1530021_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	98.6	1.8e-34
WP_031882232.1|1530017_1531259_-	AAA family ATPase	NA	M9NSS7	Staphylococcus_phage	99.5	2.2e-228
WP_001132243.1|1531255_1531612_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_001037657.1|1531611_1532367_-	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_031867651.1|1532359_1533034_-	phi PV83 orf 19-like protein	NA	R4IH15	Staphylococcus_phage	98.2	6.8e-128
WP_031867650.1|1533047_1533476_-	single-stranded DNA-binding protein	NA	A0A2H4PQQ4	Staphylococcus_phage	100.0	3.5e-53
WP_001043063.1|1533475_1534114_-	ERF family protein	NA	Q9MBS2	Staphylococcus_prophage	100.0	1.7e-115
WP_000002517.1|1534113_1534593_-	siphovirus Gp157 family protein	NA	Q9MBS3	Staphylococcus_prophage	100.0	8.1e-83
WP_031867649.1|1534607_1534868_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	98.8	1.5e-43
WP_000048124.1|1534960_1535122_-	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
WP_000977381.1|1535114_1535336_-	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_016187267.1|1535406_1535652_+	hypothetical protein	NA	E9LT77	Staphylococcus_phage	96.3	1.4e-35
WP_001555746.1|1535607_1535823_-	hypothetical protein	NA	E9LT76	Staphylococcus_phage	98.6	5.0e-32
WP_031867648.1|1535847_1536588_-	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.2	3.5e-133
WP_021285963.1|1536652_1536889_+	hypothetical protein	NA	Q4ZBN3	Staphylococcus_phage	97.4	8.7e-38
WP_001153175.1|1536881_1537043_-	hypothetical protein	NA	Q4ZBN4	Staphylococcus_phage	100.0	1.9e-20
WP_016187264.1|1537057_1537297_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J3I3	uncultured_Caudovirales_phage	88.6	9.4e-32
WP_000142628.1|1537488_1538163_+	LexA family transcriptional regulator	NA	A0A1W6JPS3	Staphylococcus_phage	92.0	2.3e-115
WP_021285964.1|1538214_1539198_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_016187262.1|1539208_1539451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001145730.1|1539517_1540567_+|integrase	site-specific integrase	integrase	A0A0H4ISP4	Staphylococcus_phage	100.0	2.7e-203
WP_001074405.1|1540634_1542032_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001010508.1|1542182_1542647_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001825559.1|1542636_1543887_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.3e-111
1549012:1549027	attR	CTTTTGGTAATTCTTT	NA	NA	NA	NA
>prophage 10
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	1631361	1645677	2904888		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000616865.1|1631361_1632123_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
WP_001245567.1|1632119_1633076_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000876311.1|1633062_1634034_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_000562498.1|1634403_1635375_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|1635494_1637600_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1637562_1637961_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068490.1|1638762_1639629_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930016.1|1639648_1640149_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_000193750.1|1640488_1641994_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_014936998.1|1642065_1642173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429003.1|1642263_1643181_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_000197271.1|1643917_1644460_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663034.1|1644618_1645677_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
>prophage 11
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	1657647	1665467	2904888		Pandoravirus(16.67%)	10	NA	NA
WP_001217786.1|1657647_1658799_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604516.1|1658782_1659376_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_000446724.1|1659726_1660395_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_114642538.1|1660396_1660816_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062968.1|1660819_1661533_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637685.1|1661631_1662216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093557.1|1662496_1662937_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_031795501.1|1663277_1663751_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1663725_1664412_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1664411_1665467_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 12
NZ_LT992475	Staphylococcus aureus isolate 20_LA_415 chromosome I	2904888	2059098	2103140	2904888	head,plate,protease,tail,capsid,terminase,holin,portal,integrase	Staphylococcus_phage(98.41%)	63	2050531:2050546	2108564:2108579
2050531:2050546	attL	ATTTTCTAATAAATGA	NA	NA	NA	NA
WP_021285991.1|2059098_2060553_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	99.6	7.5e-289
WP_000339146.1|2060564_2060867_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|2061002_2061302_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|2061347_2061512_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|2061504_2061894_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_021285990.1|2061893_2063360_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.8	5.8e-273
WP_000429558.1|2063359_2065270_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|2065285_2065576_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|2065575_2067159_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|2067167_2067992_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000438833.1|2074206_2074365_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|2074406_2074757_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|2074814_2075270_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_031795557.1|2075361_2076003_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	99.1	6.5e-120
WP_001023808.1|2076037_2076433_-	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	100.0	5.1e-67
WP_000110017.1|2076433_2076835_-	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	100.0	1.1e-67
WP_016187452.1|2076831_2077164_-	hypothetical protein	NA	M9QX19	Staphylococcus_phage	100.0	1.1e-57
WP_000050973.1|2077175_2077454_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142738.1|2077522_2078686_-|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	100.0	4.2e-218
WP_021285854.1|2078697_2079471_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	99.6	9.2e-137
WP_031796928.1|2079454_2080693_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	99.8	1.5e-234
WP_031796929.1|2080697_2082389_-|terminase	terminase large subunit	terminase	M9QX14	Staphylococcus_phage	99.5	0.0e+00
WP_000778933.1|2082378_2082684_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_031910567.1|2082811_2083126_-	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	98.1	7.2e-56
WP_000528512.1|2083282_2083720_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_078066486.1|2083732_2085100_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	1.1e-262
WP_000665203.1|2085080_2085371_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|2085504_2085603_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884844.1|2085711_2088159_-	virulence-associated E family protein	NA	R4WAL1	Staphylococcus_phage	100.0	0.0e+00
WP_015986198.1|2088210_2088411_-	DUF1514 family protein	NA	A7TWI3	Staphylococcus_phage	100.0	6.5e-26
WP_000595260.1|2088478_2088631_-	transcriptional activator RinB	NA	A7TWI2	Staphylococcus_phage	100.0	2.6e-19
WP_001596346.1|2088627_2089017_-	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.6e-65
WP_000608283.1|2089006_2089243_-	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	100.0	3.6e-36
WP_000141259.1|2089235_2089439_-	hypothetical protein	NA	A7TWH9	Staphylococcus_phage	100.0	8.8e-31
WP_015977976.1|2089435_2089642_-	DUF1381 domain-containing protein	NA	A7TWH8	Staphylococcus_phage	100.0	9.9e-30
WP_015986196.1|2090195_2090366_-	hypothetical protein	NA	A7TWH6	Staphylococcus_phage	100.0	1.9e-23
WP_015986195.1|2090352_2090607_-	DUF1024 family protein	NA	A7TWH5	Staphylococcus_phage	100.0	1.1e-38
WP_015986194.1|2090599_2090908_-	hypothetical protein	NA	A7TWH4	Staphylococcus_phage	100.0	1.2e-50
WP_001642661.1|2090904_2091276_-	hypothetical protein	NA	A7TWH3	Staphylococcus_phage	100.0	2.0e-65
WP_001642659.1|2091272_2091674_-	hypothetical protein	NA	A7TWH2	Staphylococcus_phage	100.0	2.0e-71
WP_015986193.1|2091687_2091936_-	hypothetical protein	NA	A7TWH1	Staphylococcus_phage	100.0	8.0e-42
WP_015986192.1|2091944_2092145_-	hypothetical protein	NA	A7TWH0	Staphylococcus_phage	100.0	5.6e-30
WP_015984497.1|2092147_2092405_-	DUF3310 domain-containing protein	NA	A7TWG9	Staphylococcus_phage	100.0	3.4e-43
WP_000113977.1|2092404_2092806_-	PVL family protein	NA	A7TWG8	Staphylococcus_phage	100.0	9.5e-69
WP_001164629.1|2092805_2092991_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001796208.1|2093003_2094956_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_000645042.1|2095024_2095582_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_000762547.1|2095607_2096774_-	DUF2800 domain-containing protein	NA	A0A2D1G5B8	Staphylococcus_phage	100.0	8.3e-222
WP_031775157.1|2096770_2097133_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	99.2	1.4e-55
WP_000174994.1|2097147_2097471_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_001285963.1|2097549_2097711_-	DUF1270 family protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
WP_001124190.1|2097723_2097987_-	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
WP_001036302.1|2098011_2098227_-	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
WP_001128433.1|2098281_2098647_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|2098615_2098861_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000272860.1|2098876_2099125_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PED6	Staphylococcus_phage	98.8	4.8e-39
WP_001260485.1|2099288_2099612_+	helix-turn-helix transcriptional regulator	NA	R4WAK9	Staphylococcus_phage	99.1	4.5e-53
WP_031838007.1|2099624_2100086_+	toxin	NA	A0A0H3U308	Staphylococcus_phage	98.7	1.3e-82
WP_000755718.1|2100103_2100538_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_000449655.1|2100566_2100962_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_074370993.1|2101051_2101198_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	1.7e-15
WP_000191466.1|2101194_2101809_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264745.1|2101934_2103140_+|integrase	site-specific integrase	integrase	Q4ZBP1	Staphylococcus_phage	99.8	1.9e-221
2108564:2108579	attR	TCATTTATTAGAAAAT	NA	NA	NA	NA
