The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	5303	53157	2811691	transposase,tRNA,protease	Staphylococcus_phage(91.89%)	47	NA	NA
WP_001050515.1|5303_11852_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
WP_000836471.1|12175_12487_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001807819.1|12508_14926_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025064.1|15213_16395_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|16504_17458_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|17454_18018_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|18136_18538_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|19110_19938_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|19940_20060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|20171_21173_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|21300_21759_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|21771_22953_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_000493892.1|22963_23596_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077346.1|23602_24646_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261672.1|25126_26629_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|27279_27594_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|27593_28886_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|28972_29827_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|30102_30327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|30525_30996_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_001153741.1|31108_31552_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030474.1|31538_31982_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001168915.1|32279_32915_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492903.1|33081_33702_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|34264_34978_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|35236_35539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|35793_36159_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|36155_36509_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|36758_37592_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|37803_38712_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|38836_40030_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|40401_41994_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|42290_43037_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|43041_43515_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|43580_43838_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778553.1|43834_44836_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|44840_46319_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|46477_46933_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|47235_47898_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|47978_48974_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|49049_49676_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|49716_50061_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|50158_50731_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|50928_51486_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|51856_52033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|52043_52427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|52875_53157_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
>prophage 2
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	1362327	1374172	2811691	integrase	Staphylococcus_phage(33.33%)	14	1365349:1365369	1378854:1378874
WP_000264071.1|1362327_1363794_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424968.1|1363818_1365360_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
1365349:1365369	attL	GAGTGGGAATAATTATATATA	NA	NA	NA	NA
WP_000592970.1|1365453_1366590_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	1.7e-75
WP_000819103.1|1366673_1367459_-	helix-turn-helix transcriptional regulator	NA	A0A1S5S8T5	Streptococcus_phage	58.6	1.2e-09
WP_000494396.1|1367575_1367803_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000080597.1|1367848_1368109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000773833.1|1368155_1368302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058503.1|1368294_1368519_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	61.8	3.0e-16
WP_001103964.1|1368519_1368819_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	76.8	1.1e-37
WP_000985238.1|1368909_1371273_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.2	4.4e-137
WP_001081424.1|1371694_1372039_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|1372263_1372470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657541.1|1372456_1373515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000253082.1|1373680_1374172_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.2	6.7e-24
1378854:1378874	attR	GAGTGGGAATAATTATATATA	NA	NA	NA	NA
>prophage 3
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	1641121	1688411	2811691	portal,protease,capsid,head,tail,integrase,holin	Staphylococcus_phage(93.94%)	70	1641503:1641519	1646781:1646797
WP_000817954.1|1641121_1642849_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
1641503:1641519	attL	GAATTTATTTCACAAAA	NA	NA	NA	NA
WP_000479274.1|1643207_1644437_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA	NA
WP_000857198.1|1644721_1645759_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_001549185.1|1645949_1646663_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000705240.1|1646740_1646923_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
1646781:1646797	attR	TTTTGTGAAATAAATTC	NA	NA	NA	NA
WP_000100503.1|1647122_1647308_-	hypothetical protein	NA	A0A1X9H0K5	Staphylococcus_phage	100.0	1.1e-24
WP_000345949.1|1647304_1647451_-	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
WP_001557601.1|1647524_1648379_-	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_001083975.1|1648390_1649107_-	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_000639923.1|1649270_1649513_+	DUF739 family protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
WP_000435341.1|1649525_1649786_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_001120197.1|1650406_1650727_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000066017.1|1650723_1650885_+	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_000138304.1|1650974_1651304_+	hypothetical protein	NA	D2JGJ7	Staphylococcus_phage	100.0	1.4e-33
WP_001644876.1|1651284_1651545_+	DUF1108 family protein	NA	A0A1X9H043	Staphylococcus_phage	100.0	5.8e-43
WP_000815403.1|1651554_1651776_+	DUF2483 family protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_001644875.1|1651768_1652557_+	ATP-binding protein	NA	A0A1X9H046	Staphylococcus_phage	100.0	2.6e-142
WP_000704705.1|1652585_1653137_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_001644874.1|1653149_1653842_+	hypothetical protein	NA	A0A1X9H044	Staphylococcus_phage	100.0	1.0e-131
WP_064289498.1|1653813_1654605_+	phage replisome organizer N-terminal domain-containing protein	NA	A0A2H4JCF5	uncultured_Caudovirales_phage	73.0	7.1e-84
WP_000803070.1|1654614_1655394_+	ATP-binding protein	NA	A0A1X9H042	Staphylococcus_phage	100.0	1.4e-145
WP_000256597.1|1655387_1655546_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_001123688.1|1655558_1655780_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_015997090.1|1655789_1656194_+	DUF1064 domain-containing protein	NA	C5I647	Staphylococcus_phage	100.0	1.6e-68
WP_001187244.1|1656198_1656384_+	DUF3113 family protein	NA	A0A2H4JAM6	uncultured_Caudovirales_phage	100.0	5.4e-27
WP_001140291.1|1656384_1656756_+	hypothetical protein	NA	C5I648	Staphylococcus_phage	100.0	2.7e-57
WP_000022720.1|1656755_1657013_+	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	100.0	5.7e-43
WP_000235325.1|1657015_1657216_+	hypothetical protein	NA	C5I650	Staphylococcus_phage	100.0	5.6e-30
WP_015994229.1|1657224_1657473_+	hypothetical protein	NA	A0A1X9H0L3	Staphylococcus_phage	100.0	2.7e-42
WP_001065065.1|1657513_1657762_+	DUF1024 family protein	NA	O80090	Staphylococcus_phage	100.0	3.1e-38
WP_000185636.1|1657754_1658264_+	dUTP pyrophosphatase	NA	A0A1X9H051	Staphylococcus_phage	100.0	6.6e-91
WP_001282074.1|1658300_1658546_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195782.1|1658542_1658731_+	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001125015.1|1658705_1658906_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000237868.1|1658908_1659058_+	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	98.0	1.1e-17
WP_001005262.1|1659216_1659867_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000265042.1|1659866_1660067_+	DUF1514 family protein	NA	A0A2I6PDJ9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|1660094_1660511_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988332.1|1660742_1661042_+	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
WP_000402904.1|1661171_1661516_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000025274.1|1663189_1664377_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|1664360_1665098_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|1665121_1666267_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|1666286_1666571_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|1666560_1666845_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|1666828_1667191_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114227.1|1667187_1667592_+	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000565498.1|1667588_1667996_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_114666345.1|1667996_1668641_+|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	99.5	3.2e-119
WP_071621395.1|1668682_1668907_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|1668956_1669307_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_001549167.1|1669357_1669495_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001644871.1|1669551_1674081_+|tail	phage tail tape measure protein	tail	A0A1X9H017	Staphylococcus_phage	100.0	0.0e+00
WP_000567408.1|1674077_1675562_+|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001644870.1|1675577_1679363_+	phage minor structural protein	NA	A0A1X9H0H3	Staphylococcus_phage	100.0	0.0e+00
WP_001153681.1|1679352_1679505_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|1679551_1679839_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|1679896_1680193_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|1680342_1680519_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|1680571_1680679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|1680730_1680985_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|1680996_1681752_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|1681942_1682434_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000727649.1|1683513_1683963_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|1684647_1684998_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|1685050_1685311_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|1685621_1685801_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001788321.1|1686228_1686321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001044664.1|1686498_1687332_+	YitT family protein	NA	NA	NA	NA	NA
WP_001080809.1|1687613_1688411_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 4
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	1745791	1753611	2811691		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|1745791_1746847_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|1746846_1747533_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037805.1|1747507_1747981_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093559.1|1748321_1748762_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637685.1|1749042_1749627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062967.1|1749725_1750439_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	5.0e-52
WP_000941336.1|1750442_1750862_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|1750863_1751532_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604516.1|1751882_1752476_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_001217786.1|1752459_1753611_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 5
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	1765581	1779897	2811691		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663034.1|1765581_1766640_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
WP_000197271.1|1766798_1767341_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429003.1|1768077_1768995_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_014936998.1|1769085_1769193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|1769264_1770770_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|1771109_1771610_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068490.1|1771629_1772496_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|1773297_1773696_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|1773658_1775764_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|1775883_1776855_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|1777224_1778196_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245567.1|1778182_1779139_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000616865.1|1779135_1779897_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 6
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	1919473	1942698	2811691	integrase	Streptococcus_phage(94.74%)	23	1907930:1907947	1946973:1946990
1907930:1907947	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
WP_000154905.1|1919473_1923127_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
WP_000670757.1|1923292_1924195_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000902814.1|1924521_1924911_+	YisL family protein	NA	NA	NA	NA	NA
WP_001291561.1|1925175_1926393_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|1926474_1926678_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|1927138_1927369_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|1927365_1927788_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|1928292_1928646_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|1928705_1928873_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691736.1|1928991_1930911_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_001814923.1|1930926_1931043_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224318.1|1931287_1932220_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_000769868.1|1932216_1933218_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|1933214_1935392_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000331163.1|1935394_1937842_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.9	0.0e+00
WP_000506270.1|1937825_1938332_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|1938306_1938804_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|1938920_1939142_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398286.1|1939184_1940390_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	99.8	1.1e-232
WP_000879507.1|1940412_1940565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|1940567_1941953_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|1941981_1942368_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|1942383_1942698_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
1946973:1946990	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 7
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	1969622	2010442	2811691	tRNA,protease,transposase,bacteriocin,holin	Streptococcus_phage(40.0%)	37	NA	NA
WP_000448934.1|1969622_1970612_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1970906_1971302_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217731.1|1971672_1972392_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_114666348.1|1972512_1973436_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000121214.1|1973396_1974344_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.9e-184
WP_000082727.1|1974621_1976430_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
WP_000896695.1|1976889_1977696_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|1977718_1978084_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224612.1|1978187_1978781_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242104.1|1978966_1979314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1979330_1979966_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1979982_1980792_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669942.1|1980788_1981643_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1981663_1983049_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1983058_1984903_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933200.1|1985180_1985951_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1986147_1987233_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570705.1|1987574_1989143_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889181.1|1989284_1990043_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1990236_1990746_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154224.1|1990858_1992049_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1992026_1993202_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340124.1|1993632_1995117_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_072434963.1|1995097_1995358_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049947.1|1995357_1996920_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
WP_000928413.1|1997221_1998025_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_014937014.1|1998243_2000568_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|2000584_2001943_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414168.1|2002081_2003593_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287260.1|2004081_2004651_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|2004860_2005079_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668814.1|2005159_2006146_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|2006344_2006521_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|2006535_2007138_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|2007437_2007515_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_000790905.1|2008149_2008434_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870811.1|2008477_2010442_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
>prophage 8
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	2042494	2050967	2811691		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807816.1|2042494_2042977_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_031794888.1|2042963_2044088_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174055.1|2044091_2044796_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_000848351.1|2044795_2045059_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|2045060_2045732_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032750.1|2045724_2047914_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000483707.1|2047892_2049377_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000030815.1|2049369_2050398_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|2050400_2050967_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 9
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	2307303	2312491	2811691		Staphylococcus_phage(66.67%)	9	NA	NA
WP_001807853.1|2307303_2307501_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_074347689.1|2308187_2308415_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001002341.1|2308715_2308922_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_001788716.1|2309622_2309733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|2310125_2310311_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477490.1|2310821_2311238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033855983.1|2311361_2311625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974166.1|2311669_2312254_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_001215406.1|2312317_2312491_-	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
>prophage 10
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	2586240	2594552	2811691	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|2586240_2587026_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|2587151_2588042_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062170.1|2588051_2589398_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000683941.1|2589511_2590612_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|2590614_2591292_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|2591422_2592529_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|2592752_2594552_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 11
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	2663975	2673018	2811691	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|2663975_2664494_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595008.1|2664515_2666789_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000749801.1|2666991_2669271_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|2669545_2669806_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|2669824_2670964_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019177.1|2670986_2672012_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005766.1|2672013_2673018_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 12
NZ_LT992472	Staphylococcus aureus isolate 10_5235 chromosome I	2811691	2796753	2809468	2811691	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_001050515.1|2796753_2803302_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
WP_000836471.1|2803625_2803937_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001807819.1|2803958_2806376_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025064.1|2806663_2807845_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|2807954_2808908_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|2808904_2809468_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
