The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	675	61487	2871094	head,holin,tail,transposase	Staphylococcus_phage(80.0%)	46	NA	NA
WP_000150936.1|675_960_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|943_1306_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114341.1|1302_1707_+	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000565498.1|1703_2111_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_114665709.1|2111_2756_+|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	99.5	2.5e-119
WP_071621395.1|2797_3022_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_031906184.1|3071_3422_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	99.1	1.3e-58
WP_001549167.1|3472_3610_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_114665710.1|3666_8199_+|tail	phage tail tape measure protein	tail	W5R8I2	Staphylococcus_phage	98.3	0.0e+00
WP_031889406.1|8195_9680_+|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	98.8	1.2e-294
WP_075111493.1|9695_13481_+	hypothetical protein	NA	D2JLF9	Staphylococcus_phage	99.9	0.0e+00
WP_001153681.1|13470_13623_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040254.1|13669_13957_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	98.9	4.9e-43
WP_000539688.1|14014_14311_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|14460_14637_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031790389.1|14689_14797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|14848_15103_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|15114_15870_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000702262.1|18007_18358_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|18410_18671_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|18979_19159_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791577.1|20547_20673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001214652.1|20839_21823_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000974929.1|21834_22866_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_000989088.1|22862_23831_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
WP_001807842.1|24066_25437_+	YjiH family protein	NA	NA	NA	NA	NA
WP_001251935.1|25569_25830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000147094.1|26006_26522_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000884731.1|26565_27753_+	UDPGP type 1 family protein	NA	NA	NA	NA	NA
WP_000047256.1|27771_28455_+	hemolysin III family protein	NA	NA	NA	NA	NA
WP_001237523.1|28627_29971_+	MFS transporter	NA	NA	NA	NA	NA
WP_074347702.1|30092_30566_+	multidrug efflux transporter SepA	NA	NA	NA	NA	NA
WP_001141018.1|30754_32197_+	multidrug efflux MFS transporter LmrS	NA	NA	NA	NA	NA
WP_000958520.1|32344_33409_+	P-loop NTPase	NA	NA	NA	NA	NA
WP_014653238.1|33497_33683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000162592.1|39533_40442_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.3	1.6e-26
WP_000347896.1|40630_41440_+	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_000894032.1|41441_42374_+	YbbR-like domain-containing protein	NA	NA	NA	NA	NA
WP_000521495.1|42400_43756_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_001048244.1|44038_51418_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	24.1	2.6e-18
WP_000648724.1|51736_52843_-	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_001292149.1|52842_53277_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000927105.1|53288_55421_-	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_000083794.1|55455_56994_-	PTS mannitol transporter subunit IICB	NA	NA	NA	NA	NA
WP_000334469.1|57674_59480_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.4	5.8e-97
WP_014532505.1|59891_61487_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	97.9	3.2e-269
>prophage 2
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	199940	280616	2871094	capsid,head,portal,holin,protease,tail,terminase,integrase	Staphylococcus_phage(84.62%)	108	210061:210078	234217:234234
WP_000197638.1|199940_200684_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|200858_201143_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|201218_202835_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000201398.1|203375_203555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000216896.1|203551_204178_+	hypothetical protein	NA	C8CH40	Staphylococcus_phage	44.5	2.4e-42
WP_001045074.1|204716_206024_-	potassium transporter KtrB	NA	NA	NA	NA	NA
WP_000206618.1|206406_207630_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791397.1|208061_209117_+	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	35.4	8.7e-37
WP_000595612.1|209138_210155_+	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	29.3	1.1e-25
210061:210078	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_047215969.1|211297_212335_-|integrase	site-specific integrase	integrase	A0A1P8L6H8	Staphylococcus_phage	99.7	5.7e-174
WP_000429443.1|212512_213481_-	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	48.6	2.5e-83
WP_000705238.1|213620_213788_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_070982539.1|213986_214757_-	helix-turn-helix domain-containing protein	NA	A0A1X9H0P5	Staphylococcus_phage	99.2	2.3e-140
WP_000338187.1|214916_215138_+	DUF739 family protein	NA	A0A1X9H090	Staphylococcus_phage	100.0	7.6e-36
WP_000435360.1|215161_215605_+	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
WP_000939495.1|215619_215760_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000772137.1|215752_215962_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000389905.1|216018_216210_+	hypothetical protein	NA	Q4ZDR9	Staphylococcus_virus	100.0	2.1e-26
WP_000801108.1|216211_216439_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_001148587.1|216499_217249_+	phage antirepressor KilAC domain-containing protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	2.0e-136
WP_000435343.1|217261_217522_+	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001662405.1|217541_217679_+	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	3.7e-17
WP_001120197.1|217754_218075_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000066017.1|218071_218233_+	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_000138303.1|218322_218649_+	hypothetical protein	NA	D2JGJ7	Staphylococcus_phage	98.6	7.6e-32
WP_001644876.1|218629_218890_+	DUF1108 family protein	NA	A0A1X9H043	Staphylococcus_phage	100.0	5.8e-43
WP_000815403.1|218899_219121_+	DUF2483 family protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_000134097.1|219113_219902_+	ATP-binding protein	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
WP_000704705.1|219930_220482_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_001644874.1|220494_221187_+	hypothetical protein	NA	A0A1X9H044	Staphylococcus_phage	100.0	1.0e-131
WP_000504982.1|221158_221962_+	phage replisome organizer N-terminal domain-containing protein	NA	A0A1X9H0K3	Staphylococcus_phage	100.0	7.9e-115
WP_114665713.1|221971_222751_+	ATP-binding protein	NA	A0A1X9H042	Staphylococcus_phage	99.6	4.2e-145
WP_000256597.1|222744_222903_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_001123688.1|222915_223137_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_015997090.1|223146_223551_+	DUF1064 domain-containing protein	NA	C5I647	Staphylococcus_phage	100.0	1.6e-68
WP_001187244.1|223555_223741_+	DUF3113 family protein	NA	A0A2H4JAM6	uncultured_Caudovirales_phage	100.0	5.4e-27
WP_114665714.1|223741_224110_+	hypothetical protein	NA	Q9B0F5	Staphylococcus_virus	95.1	2.2e-51
WP_000131381.1|224113_224356_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_001065039.1|224370_224619_+	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000185671.1|224611_225148_+	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_000195794.1|225184_225391_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000141180.1|225387_225591_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_114665715.1|225583_225820_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	98.7	2.4e-35
WP_001596346.1|225809_226199_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.6e-65
WP_000595265.1|226195_226345_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001005262.1|226503_227154_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000265041.1|227153_227354_+	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000590122.1|227381_227798_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988332.1|228029_228329_+	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
WP_000402904.1|228459_228804_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625088.1|228800_230462_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|230477_231665_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|231648_232386_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154552.1|232409_233555_+|capsid	phage major capsid protein	capsid	C8CH21	Staphylococcus_phage	100.0	7.3e-215
WP_000238240.1|233574_233859_+	hypothetical protein	NA	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
WP_000150936.1|233848_234133_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|234116_234479_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
234217:234234	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000114341.1|234475_234880_+	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_114665716.1|234876_235284_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	98.5	1.8e-70
WP_114665709.1|235284_235929_+|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	99.5	2.5e-119
WP_071621395.1|235970_236195_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_031906184.1|236244_236595_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	99.1	1.3e-58
WP_001549167.1|236645_236783_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_000567408.1|241369_242854_+|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001644870.1|242869_246655_+	phage minor structural protein	NA	A0A1X9H0H3	Staphylococcus_phage	100.0	0.0e+00
WP_001153681.1|246644_246797_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|246843_247131_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|247188_247485_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|247634_247811_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|247863_247971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|248022_248277_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|248288_249044_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_114665717.1|249234_249726_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	99.4	6.2e-86
WP_000702263.1|250384_250735_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|250787_251048_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|251358_251538_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_051121075.1|252495_254235_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068535.1|254505_255792_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|255991_256090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681966.1|256331_256508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|256765_257146_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991294.1|257142_258039_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	6.5e-17
WP_000645735.1|258039_258720_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|258716_259589_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221650.1|259588_260329_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|260392_260956_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966291.1|261076_261601_+	membrane protein	NA	NA	NA	NA	NA
WP_001033968.1|261660_262218_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713062.1|262214_263057_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188070.1|263113_264154_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|264604_264778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|264834_265236_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181321.1|265506_266535_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021224.1|266654_268034_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001826057.1|268085_268259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|268451_269381_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|269433_269994_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275718.1|270365_271463_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000323172.1|271667_273230_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|273240_273348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177819.1|273419_274214_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897642.1|274233_275310_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284428.1|275493_276963_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.9	1.7e-107
WP_000040870.1|276955_277777_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	6.1e-70
WP_000011542.1|278046_278649_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669861.1|278629_278803_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434536.1|279095_279419_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827738.1|279449_280616_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 3
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	384442	432296	2871094	protease,transposase,tRNA	Staphylococcus_phage(91.89%)	47	NA	NA
WP_000196442.1|384442_384724_+|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
WP_000070813.1|385172_385556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|385566_385743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000864133.1|386113_386671_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000414230.1|386868_387441_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000627549.1|387538_387883_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000669036.1|387923_388550_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000070644.1|388625_389621_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_001825423.1|389701_390364_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_016187363.1|390666_391122_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_000348381.1|391280_392759_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_000778553.1|392763_393765_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_031794906.1|393761_394019_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	9.4e-46
WP_000672013.1|394084_394558_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_016187361.1|394562_395309_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000109913.1|395605_397198_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_000933822.1|397569_398763_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366160.1|398887_399796_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000453302.1|400007_400841_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000623484.1|401090_401444_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_001200546.1|401440_401806_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000091443.1|402060_402363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|402621_403335_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000492903.1|403897_404518_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001168915.1|404684_405320_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001030474.1|405617_406061_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001153741.1|406047_406491_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671058.1|406603_407074_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_000384171.1|407272_407497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032832.1|407772_408627_+	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989103.1|408713_410006_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_000221190.1|410005_410320_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_001261672.1|410970_412473_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000077346.1|412953_413997_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_000493892.1|414003_414636_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159034.1|414646_415828_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_001008555.1|415840_416299_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001196354.1|416426_417428_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_014937042.1|417539_417659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|417661_418489_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|419061_419463_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764426.1|419581_420145_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000526541.1|420141_421095_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_001025064.1|421204_422386_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_001807819.1|422673_425091_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_000836471.1|425112_425424_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001050515.1|425747_432296_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
>prophage 4
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	561246	570289	2871094	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005766.1|561246_562251_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019177.1|562252_563278_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|563300_564440_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|564458_564719_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749801.1|564993_567273_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595008.1|567475_569749_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000364542.1|569770_570289_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 5
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	639713	648025	2871094	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217255.1|639713_641513_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
WP_001283055.1|641736_642843_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624563.1|642973_643651_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683941.1|643653_644754_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_001062170.1|644867_646214_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000924214.1|646223_647114_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|647239_648025_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 6
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	703147	792531	2871094	capsid,head,portal,tRNA,holin,protease,plate,tail,terminase,integrase	Staphylococcus_phage(75.31%)	109	705898:705915	757578:757595
WP_000064078.1|703147_703873_+	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987760.1|703853_705605_+	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.3	1.3e-21
WP_001825329.1|705849_706779_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
705898:705915	attL	GGATGTTCCACGATGGAA	NA	NA	NA	NA
WP_014532489.1|706771_708799_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	95.3	2.7e-111
WP_031871821.1|708841_710047_-|integrase	site-specific integrase	integrase	M1RZA8	Staphylococcus_phage	99.8	3.8e-222
WP_000191466.1|710157_710772_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_001794606.1|710768_710915_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	97.9	2.6e-16
WP_000825948.1|711144_711729_-	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
WP_000525004.1|711746_712208_-	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000333630.1|712220_712535_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_001121027.1|712686_712923_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_001148544.1|712936_713713_+	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
WP_000771849.1|713741_713891_+	hypothetical protein	NA	D2JGJ0	Staphylococcus_phage	100.0	1.4e-20
WP_000362644.1|713931_714144_-	hypothetical protein	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
WP_001148860.1|714213_714411_+	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
WP_000773059.1|714397_714778_-	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
WP_001025401.1|714844_715090_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|715058_715424_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001097552.1|715478_715694_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001596347.1|715720_715984_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	98.9	2.5e-46
WP_001285948.1|715996_716158_+	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_000174994.1|716236_716560_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_031863778.1|716574_716937_+	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	98.3	7.1e-55
WP_079219804.1|716933_718100_+	DUF2800 domain-containing protein	NA	M1T2Z7	Staphylococcus_phage	98.7	1.7e-219
WP_000645042.1|718125_718683_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_079219836.1|718751_720704_+	DNA polymerase	NA	M9QT72	Staphylococcus_phage	98.9	0.0e+00
WP_079219803.1|720715_720877_+	hypothetical protein	NA	A7TWH0	Staphylococcus_phage	100.0	1.7e-21
WP_079219802.1|720885_721134_+	hypothetical protein	NA	A7TWH1	Staphylococcus_phage	98.8	3.0e-41
WP_000693989.1|721147_721354_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_000695771.1|721356_721764_+	hypothetical protein	NA	M9NST1	Staphylococcus_phage	98.5	2.6e-74
WP_000983950.1|721760_721955_+	hypothetical protein	NA	A0A0U2A067	Staphylococcus_phage	96.8	1.4e-25
WP_000982714.1|721951_722389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105602.1|722385_722751_+	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	97.3	7.4e-52
WP_001065067.1|722743_722992_+	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	93.9	1.7e-36
WP_000185680.1|722984_723521_+	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_000195803.1|723557_723764_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592221.1|723760_724147_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	1.0e-64
WP_000595260.1|724143_724296_+	transcriptional activator RinB	NA	A7TWI2	Staphylococcus_phage	100.0	2.6e-19
WP_000265253.1|724363_724564_+	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	98.5	4.9e-26
WP_114665719.1|724851_727299_+	virulence-associated E family protein	NA	Q4ZCG0	Staphylococcus_virus	98.9	0.0e+00
WP_078092588.1|727407_727506_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	96.9	3.1e-10
WP_000665203.1|727639_727930_+	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_078100893.1|727910_729278_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	98.9	1.1e-260
WP_000513702.1|729290_729728_+	transcriptional regulator	NA	B7T0I6	Staphylococcus_virus	100.0	6.1e-77
WP_015994756.1|729884_730199_+	HNH endonuclease	NA	A0A0K1LL59	Staphylococcus_phage	100.0	4.2e-56
WP_000778933.1|730325_730631_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000153552.1|730620_732312_+|terminase	terminase large subunit	terminase	A0A2I6PE99	Staphylococcus_phage	98.8	0.0e+00
WP_001100664.1|732316_733555_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_021285854.1|733538_734312_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	99.6	9.2e-137
WP_031794937.1|734323_735487_+|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	99.7	2.1e-217
WP_000050973.1|735555_735834_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_016187452.1|735845_736178_+	hypothetical protein	NA	M9QX19	Staphylococcus_phage	100.0	1.1e-57
WP_031794936.1|736174_736576_+	phage protein	NA	A0A0K1LL98	Staphylococcus_phage	99.2	4.0e-67
WP_001023808.1|736576_736972_+	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	100.0	5.1e-67
WP_000807536.1|737006_737648_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169128.1|737739_738195_+	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_031775785.1|738252_738603_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	99.1	2.0e-54
WP_000438833.1|738644_738803_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_079219800.1|738816_745017_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	97.8	0.0e+00
WP_031775783.1|745016_745841_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	99.6	7.0e-159
WP_000384460.1|745849_747433_+|tail	phage tail protein	tail	Q4ZD01	Staphylococcus_virus	99.8	3.5e-308
WP_000179864.1|747432_747723_+	hypothetical protein	NA	R4WEC3	Staphylococcus_phage	100.0	2.1e-49
WP_000429556.1|747738_749649_+	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	99.2	0.0e+00
WP_031776075.1|749648_751115_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.8	4.4e-273
WP_001166606.1|751114_751504_+	DUF2977 domain-containing protein	NA	Q4ZCZ7	Staphylococcus_virus	95.3	5.4e-61
WP_000916022.1|751496_751661_+	XkdX family protein	NA	M9QX31	Staphylococcus_phage	98.1	1.9e-23
WP_000466774.1|751706_752006_+	DUF2951 family protein	NA	M9QRV2	Staphylococcus_phage	100.0	2.6e-31
WP_000354117.1|752141_752579_+|holin	phage holin	holin	M9QTA6	Staphylococcus_phage	97.9	3.8e-71
WP_001148129.1|752559_754005_+	SH3 domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	96.9	1.7e-288
WP_000201920.1|754907_755087_+	hypothetical protein	NA	M9QYR8	Staphylococcus_phage	100.0	4.1e-24
WP_000455173.1|755108_755636_+	DUF4065 domain-containing protein	NA	M9QX37	Staphylococcus_phage	100.0	3.4e-98
WP_016187462.1|755607_756024_+	hypothetical protein	NA	M9QRV7	Staphylococcus_phage	100.0	6.4e-76
WP_000126130.1|756239_756455_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
WP_001825313.1|756545_757475_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001807840.1|757529_758426_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
757578:757595	attR	GGATGTTCCACGATGGAA	NA	NA	NA	NA
WP_001825312.1|758880_759813_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001186909.1|760216_760762_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151997.1|760867_761116_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|761223_762177_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000902104.1|762166_763546_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	6.4e-56
WP_000069278.1|763698_765153_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_001807838.1|765278_765395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001174257.1|765555_766542_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000681742.1|766656_767625_-	asparaginase	NA	NA	NA	NA	NA
WP_000644390.1|767701_768361_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_001807839.1|768391_768508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001825307.1|768624_768816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000133960.1|769072_770248_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000165530.1|770469_771780_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000161737.1|771796_772795_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001043863.1|772965_773238_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|773668_774241_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774681.1|774243_774969_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001096479.1|774970_775930_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|776021_776471_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|776676_776877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269939.1|777263_778430_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
WP_000776339.1|778455_779520_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000245908.1|779529_780828_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000389530.1|780834_782079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000005220.1|782092_782668_+	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	1.6e-08
WP_000154694.1|782657_783245_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_031774809.1|783316_783997_+	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000839926.1|784331_784649_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000690021.1|784892_786035_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000361538.1|786039_787242_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	7.1e-35
WP_000049916.1|787228_788200_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525056.1|788223_790917_+	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.3	1.4e-46
WP_000858789.1|791238_792531_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
>prophage 7
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	969294	974482	2871094		Staphylococcus_phage(66.67%)	8	NA	NA
WP_001215406.1|969294_969468_+	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
WP_000974166.1|969531_970116_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_000477490.1|970547_970964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|971474_971660_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|972052_972163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002341.1|972863_973070_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_074347689.1|973370_973598_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001807853.1|974284_974482_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
>prophage 8
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	1230819	1239292	2871094		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238668.1|1230819_1231386_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
WP_000030815.1|1231388_1232417_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000483707.1|1232409_1233894_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000032750.1|1233872_1236062_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000666799.1|1236054_1236726_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848351.1|1236727_1236991_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174055.1|1236990_1237695_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_031794888.1|1237698_1238823_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001807816.1|1238809_1239292_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 9
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	1259075	1283543	2871094	holin,bacteriocin,protease	Planktothrix_phage(50.0%)	27	NA	NA
WP_001088778.1|1259075_1260257_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284455.1|1260294_1260624_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|1260861_1261683_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150215.1|1261675_1262479_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526673.1|1262465_1264139_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190616.1|1264125_1265487_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|1265668_1266607_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620945.1|1266657_1267209_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867362.1|1267373_1267589_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_001794249.1|1267652_1267784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081332.1|1267832_1268792_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1269282_1269639_+	DoxX family protein	NA	NA	NA	NA	NA
WP_157958947.1|1269727_1269916_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001796515.1|1270005_1270296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571192.1|1270383_1271025_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_000668623.1|1271021_1271342_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870811.1|1271344_1273309_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000790905.1|1273352_1273637_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_099119695.1|1274271_1274349_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_001033867.1|1274648_1275251_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|1275265_1275442_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668814.1|1275640_1276627_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|1276707_1276926_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287260.1|1277135_1277705_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414168.1|1278193_1279705_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021872.1|1279843_1281202_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_014937014.1|1281218_1283543_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
>prophage 10
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	1338013	1361238	2871094	integrase	Streptococcus_phage(94.74%)	23	1333722:1333739	1372765:1372782
1333722:1333739	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
WP_000420682.1|1338013_1338328_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|1338343_1338730_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|1338758_1340144_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|1340146_1340299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398286.1|1340321_1341527_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	99.8	1.1e-232
WP_001009056.1|1341569_1341791_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|1341907_1342405_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|1342379_1342886_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331163.1|1342869_1345317_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.9	0.0e+00
WP_000804748.1|1345319_1347497_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|1347493_1348495_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224318.1|1348491_1349424_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_001814923.1|1349668_1349785_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691736.1|1349800_1351720_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_000336323.1|1351838_1352006_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|1352065_1352419_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|1352923_1353346_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|1353342_1353573_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|1354033_1354237_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|1354318_1355536_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000902814.1|1355800_1356190_-	YisL family protein	NA	NA	NA	NA	NA
WP_000670757.1|1356516_1357419_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000154905.1|1357584_1361238_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
1372765:1372782	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 11
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	1500888	1515204	2871094		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000616865.1|1500888_1501650_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
WP_001245567.1|1501646_1502603_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000876311.1|1502589_1503561_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_000562498.1|1503930_1504902_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|1505021_1507127_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1507089_1507488_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068490.1|1508289_1509156_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930016.1|1509175_1509676_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_000193750.1|1510015_1511521_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_014936998.1|1511592_1511700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429003.1|1511790_1512708_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_000197271.1|1513444_1513987_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663034.1|1514145_1515204_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
>prophage 12
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	1527174	1534994	2871094		Pandoravirus(16.67%)	10	NA	NA
WP_001217786.1|1527174_1528326_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604516.1|1528309_1528903_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_000446724.1|1529253_1529922_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1529923_1530343_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062967.1|1530346_1531060_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	5.0e-52
WP_000637685.1|1531158_1531743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093559.1|1532023_1532464_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037805.1|1532804_1533278_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1533252_1533939_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1533938_1534994_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 13
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	1862808	1872352	2871094	integrase	Staphylococcus_phage(33.33%)	11	1855549:1855569	1869311:1869331
1855549:1855569	attL	TATATATAATTATTCCCACTC	NA	NA	NA	NA
WP_001082128.1|1862808_1863153_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	64.3	1.2e-40
WP_031593609.1|1863823_1866196_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	3.7e-136
WP_001103957.1|1866286_1866580_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	46.1	1.7e-14
WP_031774950.1|1866580_1866805_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	58.8	7.5e-15
WP_162852058.1|1866797_1866944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000080597.1|1866990_1867251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031588042.1|1867247_1867487_-	helix-turn-helix transcriptional regulator	NA	Q38329	Lactococcus_phage	40.0	2.5e-08
WP_031588064.1|1867619_1868006_+	helix-turn-helix transcriptional regulator	NA	U3PIS7	Lactobacillus_phage	41.2	3.8e-06
WP_000592970.1|1868089_1869226_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	1.7e-75
WP_000424968.1|1869319_1870861_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
1869311:1869331	attR	TATATATAATTATTCCCACTC	NA	NA	NA	NA
WP_000264071.1|1870885_1872352_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 14
NZ_LT992469	Staphylococcus aureus isolate 15_LA_305 chromosome I	2871094	2848189	2870188	2871094	protease,portal,integrase	Staphylococcus_phage(90.24%)	41	2838977:2838991	2866292:2866306
2838977:2838991	attL	TTAAAGAAAAAGAAA	NA	NA	NA	NA
WP_000857198.1|2848189_2849227_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000391618.1|2849399_2849939_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	33.1	9.0e-14
WP_000705238.1|2850078_2850246_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000109189.1|2850316_2850502_-	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
WP_000345949.1|2850498_2850645_-	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
WP_001557601.1|2850718_2851573_-	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_001083975.1|2851584_2852301_-	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_000639923.1|2852464_2852707_+	DUF739 family protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
WP_001662741.1|2852719_2853163_+	hypothetical protein	NA	Q6R853	Staphylococcus_virus	100.0	2.0e-75
WP_000939495.1|2853177_2853318_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000772137.1|2853310_2853520_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_001148337.1|2853576_2854326_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_000435343.1|2854338_2854599_+	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001662405.1|2854618_2854756_+	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	3.7e-17
WP_001120936.1|2854831_2855152_+	DUF771 domain-containing protein	NA	A0A1W6JPI1	Staphylococcus_phage	100.0	7.4e-56
WP_000066011.1|2855148_2855310_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291488.1|2855402_2855663_+	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_001205732.1|2855671_2855935_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_174220587.1|2855931_2857887_+	AAA family ATPase	NA	R9QT82	Staphylococcus_phage	99.2	0.0e+00
WP_000138475.1|2857888_2858809_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_072460574.1|2858889_2859507_+	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	100.0	1.2e-86
WP_000934770.1|2859507_2859978_+	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	4.8e-80
WP_061741412.1|2860007_2860892_+	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	96.6	1.2e-137
WP_000338528.1|2860898_2861117_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401964.1|2861125_2861530_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000101270.1|2861542_2861911_+	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000131381.1|2861914_2862157_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_001065039.1|2862171_2862420_+	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000185671.1|2862412_2862949_+	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_000195794.1|2862985_2863192_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000141180.1|2863188_2863392_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_114665715.1|2863384_2863621_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	98.7	2.4e-35
WP_001596346.1|2863610_2864000_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.6e-65
WP_000595265.1|2863996_2864146_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001005262.1|2864304_2864955_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000265041.1|2864954_2865155_+	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000590122.1|2865182_2865599_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988332.1|2865830_2866130_+	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
WP_000402904.1|2866260_2866605_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
2866292:2866306	attR	TTAAAGAAAAAGAAA	NA	NA	NA	NA
WP_000025274.1|2868279_2869467_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2869450_2870188_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
