assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900324325.1_14_5418	NZ_LT992473	Staphylococcus aureus isolate 14_5418 chromosome I	1	107070-107152	1	CRISPRCasFinder	no		csa3,cas3,DinG,DEDDh,WYL,TnsE_C	Orphan	GTAAGCTGACTTTTTCGTCAGCTTC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,DEDDh,WYL,TnsE_C	NA,NA	NA|383aa|up_9|NZ_LT992473.1_96593_97742_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|408aa|up_8|NZ_LT992473.1_97741_98965_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|257aa|up_7|NZ_LT992473.1_99008_99779_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|165aa|up_6|NZ_LT992473.1_99876_100371_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_5|NZ_LT992473.1_100493_101441_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_4|NZ_LT992473.1_101528_102731_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_3|NZ_LT992473.1_102977_103478_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_2|NZ_LT992473.1_103618_104737_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|352aa|up_1|NZ_LT992473.1_105052_106108_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_0|NZ_LT992473.1_106282_106972_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|down_0|NZ_LT992473.1_107477_107891_-	pfam00582, Usp, Universal stress protein family	NA|433aa|down_1|NZ_LT992473.1_108095_109394_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_2|NZ_LT992473.1_109763_110705_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_3|NZ_LT992473.1_110725_113923_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_4|NZ_LT992473.1_114371_115601_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_5|NZ_LT992473.1_115795_116653_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_6|NZ_LT992473.1_116652_117597_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_7|NZ_LT992473.1_117865_118834_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_8|NZ_LT992473.1_118855_120613_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_9|NZ_LT992473.1_120956_122318_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
GCF_900324325.1_14_5418	NZ_LT992473	Staphylococcus aureus isolate 14_5418 chromosome I	2	991360-991440	2	CRISPRCasFinder	no		csa3,cas3,DinG,DEDDh,WYL,TnsE_C	Orphan	GGGAGTGGGAGAGAAATGATAAAGA	25	1	1	991385-991415	NZ_LT992473.1_1046369-1046339	NA	1	1	Orphan	csa3,cas3,DinG,DEDDh,WYL,TnsE_C	NA|105aa|up_7|NZ_LT992473.1_983438_983753_+,NA	NA|356aa|up_9|NZ_LT992473.1_980948_982016_-	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|347aa|up_8|NZ_LT992473.1_982029_983070_-	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|105aa|up_7|NZ_LT992473.1_983438_983753_+	NA	NA|466aa|up_6|NZ_LT992473.1_984084_985482_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|155aa|up_5|NZ_LT992473.1_985632_986097_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|417aa|up_4|NZ_LT992473.1_986086_987337_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_3|NZ_LT992473.1_987442_988750_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_2|NZ_LT992473.1_988848_989610_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_1|NZ_LT992473.1_989937_990789_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_0|NZ_LT992473.1_991022_991217_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|down_0|NZ_LT992473.1_992024_992846_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|down_1|NZ_LT992473.1_992863_993559_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|down_2|NZ_LT992473.1_993551_994577_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|down_3|NZ_LT992473.1_994826_995123_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|down_4|NZ_LT992473.1_995115_995502_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_5|NZ_LT992473.1_996203_997082_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_6|NZ_LT992473.1_997261_997642_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_7|NZ_LT992473.1_997799_998156_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_8|NZ_LT992473.1_998299_998620_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_9|NZ_LT992473.1_998769_999309_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA
GCF_900324325.1_14_5418	NZ_LT992473	Staphylococcus aureus isolate 14_5418 chromosome I	3	1203034-1203142	3	CRISPRCasFinder	no		csa3,cas3,DinG,DEDDh,WYL,TnsE_C	Orphan	TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	39	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,DEDDh,WYL,TnsE_C	NA|239aa|up_5|NZ_LT992473.1_1197915_1198632_-,NA|169aa|up_4|NZ_LT992473.1_1198793_1199300_-,NA	NA|75aa|up_9|NZ_LT992473.1_1194038_1194263_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_LT992473.1_1194455_1195385_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_LT992473.1_1196332_1196707_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_LT992473.1_1196958_1197747_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_LT992473.1_1197915_1198632_-	NA	NA|169aa|up_4|NZ_LT992473.1_1198793_1199300_-	NA	NA|267aa|up_3|NZ_LT992473.1_1199435_1200236_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_LT992473.1_1200219_1200939_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_LT992473.1_1200993_1201944_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_LT992473.1_1202094_1202982_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_LT992473.1_1203311_1203947_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_LT992473.1_1204431_1206093_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_LT992473.1_1206089_1206506_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_LT992473.1_1206781_1207792_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_LT992473.1_1208290_1208812_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_LT992473.1_1208839_1210135_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_LT992473.1_1210174_1210651_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_LT992473.1_1210820_1211357_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_LT992473.1_1211802_1212741_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_LT992473.1_1213010_1213637_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_900324325.1_14_5418	NZ_LT992473	Staphylococcus aureus isolate 14_5418 chromosome I	4	2154886-2155019	1	PILER-CR	no		csa3,cas3,DinG,DEDDh,WYL,TnsE_C	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DinG,DEDDh,WYL,TnsE_C	NA,NA|103aa|down_1|NZ_LT992473.1_2160153_2160462_-,NA|89aa|down_2|NZ_LT992473.1_2160605_2160872_-	NA|388aa|up_9|NZ_LT992473.1_2139212_2140376_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|204aa|up_8|NZ_LT992473.1_2140473_2141085_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_7|NZ_LT992473.1_2141631_2142909_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_6|NZ_LT992473.1_2143820_2145644_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_5|NZ_LT992473.1_2145770_2146187_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_4|NZ_LT992473.1_2146417_2147110_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|263aa|up_3|NZ_LT992473.1_2147249_2148038_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_2|NZ_LT992473.1_2148194_2148872_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_1|NZ_LT992473.1_2148896_2150450_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_0|NZ_LT992473.1_2150566_2151925_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|289aa|down_0|NZ_LT992473.1_2159161_2160028_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992473.1_2160153_2160462_-	NA	NA|89aa|down_2|NZ_LT992473.1_2160605_2160872_-	NA	NA|584aa|down_3|NZ_LT992473.1_2161155_2162907_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992473.1_2162982_2164176_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992473.1_2164271_2165201_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992473.1_2165443_2166217_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992473.1_2166328_2167093_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992473.1_2167340_2168126_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992473.1_2168122_2169478_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324325.1_14_5418	NZ_LT992473	Staphylococcus aureus isolate 14_5418 chromosome I	5	2158430-2158563	2	PILER-CR	no		csa3,cas3,DinG,DEDDh,WYL,TnsE_C	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DinG,DEDDh,WYL,TnsE_C	NA,NA|103aa|down_1|NZ_LT992473.1_2160153_2160462_-,NA|89aa|down_2|NZ_LT992473.1_2160605_2160872_-	NA|204aa|up_9|NZ_LT992473.1_2140473_2141085_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_LT992473.1_2141631_2142909_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_LT992473.1_2143820_2145644_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_LT992473.1_2145770_2146187_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_LT992473.1_2146417_2147110_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|263aa|up_4|NZ_LT992473.1_2147249_2148038_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_3|NZ_LT992473.1_2148194_2148872_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_LT992473.1_2148896_2150450_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_LT992473.1_2150566_2151925_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1018aa|up_0|NZ_LT992473.1_2152393_2155447_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_LT992473.1_2159161_2160028_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992473.1_2160153_2160462_-	NA	NA|89aa|down_2|NZ_LT992473.1_2160605_2160872_-	NA	NA|584aa|down_3|NZ_LT992473.1_2161155_2162907_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992473.1_2162982_2164176_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992473.1_2164271_2165201_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992473.1_2165443_2166217_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992473.1_2166328_2167093_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992473.1_2167340_2168126_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992473.1_2168122_2169478_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324325.1_14_5418	NZ_LT992473	Staphylococcus aureus isolate 14_5418 chromosome I	6	2183027-2183121	4	CRISPRCasFinder	no		csa3,cas3,DinG,DEDDh,WYL,TnsE_C	Orphan	TTGCTTCGCAACAACTGCATAAGAGCCT	28	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DinG,DEDDh,WYL,TnsE_C	NA|105aa|up_8|NZ_LT992473.1_2174868_2175183_-,NA|121aa|up_0|NZ_LT992473.1_2181995_2182358_+,NA|249aa|down_9|NZ_LT992473.1_2192788_2193535_-	NA|140aa|up_9|NZ_LT992473.1_2172572_2172992_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|105aa|up_8|NZ_LT992473.1_2174868_2175183_-	NA	NA|403aa|up_7|NZ_LT992473.1_2175188_2176397_-	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|128aa|up_6|NZ_LT992473.1_2176463_2176847_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|up_5|NZ_LT992473.1_2177301_2177712_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|133aa|up_4|NZ_LT992473.1_2177738_2178137_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|141aa|up_3|NZ_LT992473.1_2178608_2179031_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|513aa|up_2|NZ_LT992473.1_2179142_2180681_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|273aa|up_1|NZ_LT992473.1_2180914_2181733_+	PRK08589, PRK08589, SDR family oxidoreductase	NA|121aa|up_0|NZ_LT992473.1_2181995_2182358_+	NA	NA|274aa|down_0|NZ_LT992473.1_2183306_2184128_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|273aa|down_1|NZ_LT992473.1_2184138_2184957_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|434aa|down_2|NZ_LT992473.1_2184949_2186251_+	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|533aa|down_3|NZ_LT992473.1_2186393_2187992_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|312aa|down_4|NZ_LT992473.1_2188004_2188940_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_5|NZ_LT992473.1_2188936_2189806_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_6|NZ_LT992473.1_2189802_2190618_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|down_7|NZ_LT992473.1_2190610_2191360_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|398aa|down_8|NZ_LT992473.1_2191371_2192565_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|249aa|down_9|NZ_LT992473.1_2192788_2193535_-	NA
GCF_900324325.1_14_5418	NZ_LT992473	Staphylococcus aureus isolate 14_5418 chromosome I	7	2227373-2227451	5	CRISPRCasFinder	no		csa3,cas3,DinG,DEDDh,WYL,TnsE_C	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	1	2227396-2227428	NZ_LT992473.1_1603722-1603690	NA	1	1	Orphan	csa3,cas3,DinG,DEDDh,WYL,TnsE_C	NA|220aa|up_3|NZ_LT992473.1_2224297_2224957_-,NA|36aa|up_0|NZ_LT992473.1_2226945_2227053_+,NA|56aa|down_2|NZ_LT992473.1_2231508_2231676_+	NA|693aa|up_9|NZ_LT992473.1_2216753_2218832_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_LT992473.1_2218969_2220379_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_LT992473.1_2220664_2221471_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_LT992473.1_2221533_2222190_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_LT992473.1_2222302_2222776_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_LT992473.1_2222898_2224110_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_LT992473.1_2224297_2224957_-	NA	NA|381aa|up_2|NZ_LT992473.1_2225016_2226159_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_LT992473.1_2226425_2226812_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_LT992473.1_2226945_2227053_+	NA	NA|588aa|down_0|NZ_LT992473.1_2227756_2229520_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_LT992473.1_2229544_2231278_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_LT992473.1_2231508_2231676_+	NA	NA|229aa|down_3|NZ_LT992473.1_2231730_2232417_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_LT992473.1_2232394_2233753_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_LT992473.1_2233754_2234762_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_LT992473.1_2234739_2235855_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_LT992473.1_2235865_2236558_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_LT992473.1_2236568_2237036_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_LT992473.1_2237087_2238065_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_900324325.1_14_5418	NZ_LT992473	Staphylococcus aureus isolate 14_5418 chromosome I	8	2523103-2523253	6	CRISPRCasFinder	no	TnsE_C,csa3	csa3,cas3,DinG,DEDDh,WYL,TnsE_C	Type I-A	TGCATAAGAGCCCCTTACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DinG,DEDDh,WYL,TnsE_C	NA|107aa|up_9|NZ_LT992473.1_2514565_2514886_+,NA|53aa|up_1|NZ_LT992473.1_2521830_2521989_-,NA|35aa|up_0|NZ_LT992473.1_2522668_2522773_+,NA|364aa|down_0|NZ_LT992473.1_2523270_2524362_-,NA|77aa|down_5|NZ_LT992473.1_2528149_2528380_+	NA|107aa|up_9|NZ_LT992473.1_2514565_2514886_+	NA	TnsE_C|135aa|up_8|NZ_LT992473.1_2515063_2515468_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|97aa|up_7|NZ_LT992473.1_2515592_2515883_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|490aa|up_6|NZ_LT992473.1_2515942_2517412_+	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|345aa|up_5|NZ_LT992473.1_2517505_2518540_+	pfam13676, TIR_2, TIR domain	NA|203aa|up_4|NZ_LT992473.1_2518567_2519176_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|261aa|up_3|NZ_LT992473.1_2519465_2520248_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_LT992473.1_2520315_2521173_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_LT992473.1_2521830_2521989_-	NA	NA|35aa|up_0|NZ_LT992473.1_2522668_2522773_+	NA	NA|364aa|down_0|NZ_LT992473.1_2523270_2524362_-	NA	NA|327aa|down_1|NZ_LT992473.1_2524627_2525608_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_LT992473.1_2525609_2525930_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_LT992473.1_2526081_2526747_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_LT992473.1_2527180_2528119_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_LT992473.1_2528149_2528380_+	NA	NA|458aa|down_6|NZ_LT992473.1_2529051_2530425_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_LT992473.1_2530882_2531296_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_LT992473.1_2531495_2531939_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_LT992473.1_2532059_2532770_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_900324325.1_14_5418	NZ_LT992473	Staphylococcus aureus isolate 14_5418 chromosome I	9	2578670-2578882	7	CRISPRCasFinder	no		csa3,cas3,DinG,DEDDh,WYL,TnsE_C	Orphan	CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	47	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DinG,DEDDh,WYL,TnsE_C	NA|107aa|up_0|NZ_LT992473.1_2578315_2578636_-,NA|46aa|down_4|NZ_LT992473.1_2581882_2582020_+	NA|147aa|up_9|NZ_LT992473.1_2569789_2570230_+	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|147aa|up_8|NZ_LT992473.1_2570286_2570727_-	pfam14183, YwpF, YwpF-like protein	NA|132aa|up_7|NZ_LT992473.1_2570920_2571316_+	pfam00436, SSB, Single-strand binding protein family	NA|232aa|up_6|NZ_LT992473.1_2571704_2572400_+	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|230aa|up_5|NZ_LT992473.1_2572786_2573476_+	TIGR04306, salvage_TenA, thiaminase II	NA|277aa|up_4|NZ_LT992473.1_2573468_2574299_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|264aa|up_3|NZ_LT992473.1_2574282_2575074_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|214aa|up_2|NZ_LT992473.1_2575075_2575717_+	PRK00043, thiE, thiamine phosphate synthase	NA|291aa|up_1|NZ_LT992473.1_2575802_2576675_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|107aa|up_0|NZ_LT992473.1_2578315_2578636_-	NA	NA|216aa|down_0|NZ_LT992473.1_2578915_2579563_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|495aa|down_1|NZ_LT992473.1_2579590_2581075_-	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|98aa|down_2|NZ_LT992473.1_2581240_2581534_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|70aa|down_3|NZ_LT992473.1_2581545_2581755_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|46aa|down_4|NZ_LT992473.1_2581882_2582020_+	NA	NA|401aa|down_5|NZ_LT992473.1_2582283_2583486_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|357aa|down_6|NZ_LT992473.1_2583803_2584874_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|452aa|down_7|NZ_LT992473.1_2584888_2586244_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|507aa|down_8|NZ_LT992473.1_2586759_2588280_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|232aa|down_9|NZ_LT992473.1_2588632_2589328_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
