assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900324305.1_13_LA_301	NZ_LT992470	Staphylococcus aureus isolate 13_LA_301 chromosome I	1	10817-10899	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	GTAAGCTGACTTTTTCGTCAGCTTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|128aa|up_6|NZ_LT992470.1_3734_4118_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_5|NZ_LT992470.1_4240_5188_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_4|NZ_LT992470.1_5275_6478_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_3|NZ_LT992470.1_6724_7225_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_2|NZ_LT992470.1_7365_8484_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|352aa|up_1|NZ_LT992470.1_8799_9855_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_0|NZ_LT992470.1_10029_10719_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|down_0|NZ_LT992470.1_11224_11638_-	pfam00582, Usp, Universal stress protein family	NA|433aa|down_1|NZ_LT992470.1_11842_13141_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_2|NZ_LT992470.1_13510_14452_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_3|NZ_LT992470.1_14472_17670_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_4|NZ_LT992470.1_18118_19348_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_5|NZ_LT992470.1_19542_20400_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_6|NZ_LT992470.1_20399_21344_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_7|NZ_LT992470.1_21612_22581_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_8|NZ_LT992470.1_22602_24360_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_9|NZ_LT992470.1_24703_26065_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
GCF_900324305.1_13_LA_301	NZ_LT992470	Staphylococcus aureus isolate 13_LA_301 chromosome I	2	895059-895139	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	GGGAGTGGGAGAGAAATGATAAAGA	25	1	1	895084-895114	NZ_LT992470.1_950067-950037	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|105aa|up_7|NZ_LT992470.1_887137_887452_+,NA	NA|356aa|up_9|NZ_LT992470.1_884647_885715_-	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|347aa|up_8|NZ_LT992470.1_885728_886769_-	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|105aa|up_7|NZ_LT992470.1_887137_887452_+	NA	NA|466aa|up_6|NZ_LT992470.1_887783_889181_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|155aa|up_5|NZ_LT992470.1_889331_889796_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|417aa|up_4|NZ_LT992470.1_889785_891036_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_3|NZ_LT992470.1_891141_892449_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_2|NZ_LT992470.1_892547_893309_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_1|NZ_LT992470.1_893636_894488_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_0|NZ_LT992470.1_894721_894916_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|down_0|NZ_LT992470.1_895723_896545_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|down_1|NZ_LT992470.1_896562_897258_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|down_2|NZ_LT992470.1_897250_898276_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|down_3|NZ_LT992470.1_898525_898822_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|down_4|NZ_LT992470.1_898814_899201_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_5|NZ_LT992470.1_899902_900781_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_6|NZ_LT992470.1_900960_901341_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_7|NZ_LT992470.1_901498_901855_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_8|NZ_LT992470.1_901998_902319_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_9|NZ_LT992470.1_902468_903008_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA
GCF_900324305.1_13_LA_301	NZ_LT992470	Staphylococcus aureus isolate 13_LA_301 chromosome I	3	1106736-1106844	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|239aa|up_5|NZ_LT992470.1_1101617_1102334_-,NA|169aa|up_4|NZ_LT992470.1_1102495_1103002_-,NA	NA|75aa|up_9|NZ_LT992470.1_1097740_1097965_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_LT992470.1_1098157_1099087_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_LT992470.1_1100034_1100409_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_LT992470.1_1100660_1101449_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_LT992470.1_1101617_1102334_-	NA	NA|169aa|up_4|NZ_LT992470.1_1102495_1103002_-	NA	NA|267aa|up_3|NZ_LT992470.1_1103137_1103938_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_LT992470.1_1103921_1104641_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_LT992470.1_1104695_1105646_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_LT992470.1_1105796_1106684_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_LT992470.1_1107013_1107649_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_LT992470.1_1108133_1109795_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_LT992470.1_1109791_1110208_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_LT992470.1_1110483_1111494_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_LT992470.1_1111992_1112514_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_LT992470.1_1112541_1113837_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_LT992470.1_1113876_1114353_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_LT992470.1_1114522_1115059_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_LT992470.1_1115504_1116443_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_LT992470.1_1116712_1117339_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_900324305.1_13_LA_301	NZ_LT992470	Staphylococcus aureus isolate 13_LA_301 chromosome I	4	2058598-2058731	1	PILER-CR	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA,NA|103aa|down_1|NZ_LT992470.1_2063865_2064174_-,NA|89aa|down_2|NZ_LT992470.1_2064317_2064584_-	NA|388aa|up_9|NZ_LT992470.1_2042924_2044088_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|204aa|up_8|NZ_LT992470.1_2044185_2044797_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_7|NZ_LT992470.1_2045343_2046621_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_6|NZ_LT992470.1_2047532_2049356_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_5|NZ_LT992470.1_2049482_2049899_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_4|NZ_LT992470.1_2050129_2050822_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|263aa|up_3|NZ_LT992470.1_2050961_2051750_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_2|NZ_LT992470.1_2051906_2052584_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_1|NZ_LT992470.1_2052608_2054162_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_0|NZ_LT992470.1_2054278_2055637_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|289aa|down_0|NZ_LT992470.1_2062873_2063740_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992470.1_2063865_2064174_-	NA	NA|89aa|down_2|NZ_LT992470.1_2064317_2064584_-	NA	NA|584aa|down_3|NZ_LT992470.1_2064867_2066619_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992470.1_2066694_2067888_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992470.1_2067983_2068913_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992470.1_2069155_2069929_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992470.1_2070040_2070805_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992470.1_2071052_2071838_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992470.1_2071834_2073190_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324305.1_13_LA_301	NZ_LT992470	Staphylococcus aureus isolate 13_LA_301 chromosome I	5	2062142-2062275	2	PILER-CR	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA,NA|103aa|down_1|NZ_LT992470.1_2063865_2064174_-,NA|89aa|down_2|NZ_LT992470.1_2064317_2064584_-	NA|204aa|up_9|NZ_LT992470.1_2044185_2044797_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_LT992470.1_2045343_2046621_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_LT992470.1_2047532_2049356_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_LT992470.1_2049482_2049899_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_LT992470.1_2050129_2050822_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|263aa|up_4|NZ_LT992470.1_2050961_2051750_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_3|NZ_LT992470.1_2051906_2052584_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_LT992470.1_2052608_2054162_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_LT992470.1_2054278_2055637_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1018aa|up_0|NZ_LT992470.1_2056105_2059159_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_LT992470.1_2062873_2063740_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992470.1_2063865_2064174_-	NA	NA|89aa|down_2|NZ_LT992470.1_2064317_2064584_-	NA	NA|584aa|down_3|NZ_LT992470.1_2064867_2066619_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992470.1_2066694_2067888_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992470.1_2067983_2068913_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992470.1_2069155_2069929_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992470.1_2070040_2070805_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992470.1_2071052_2071838_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992470.1_2071834_2073190_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324305.1_13_LA_301	NZ_LT992470	Staphylococcus aureus isolate 13_LA_301 chromosome I	6	2086738-2086832	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	TTGCTTCGCAACAACTGCATAAGAGCCT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|105aa|up_8|NZ_LT992470.1_2078579_2078894_-,NA|121aa|up_0|NZ_LT992470.1_2085706_2086069_+,NA|249aa|down_9|NZ_LT992470.1_2096499_2097246_-	NA|140aa|up_9|NZ_LT992470.1_2076284_2076704_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|105aa|up_8|NZ_LT992470.1_2078579_2078894_-	NA	NA|403aa|up_7|NZ_LT992470.1_2078899_2080108_-	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|128aa|up_6|NZ_LT992470.1_2080174_2080558_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|up_5|NZ_LT992470.1_2081012_2081423_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|133aa|up_4|NZ_LT992470.1_2081449_2081848_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|141aa|up_3|NZ_LT992470.1_2082319_2082742_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|513aa|up_2|NZ_LT992470.1_2082853_2084392_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|273aa|up_1|NZ_LT992470.1_2084625_2085444_+	PRK08589, PRK08589, SDR family oxidoreductase	NA|121aa|up_0|NZ_LT992470.1_2085706_2086069_+	NA	NA|274aa|down_0|NZ_LT992470.1_2087017_2087839_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|273aa|down_1|NZ_LT992470.1_2087849_2088668_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|434aa|down_2|NZ_LT992470.1_2088660_2089962_+	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|533aa|down_3|NZ_LT992470.1_2090104_2091703_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|312aa|down_4|NZ_LT992470.1_2091715_2092651_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_5|NZ_LT992470.1_2092647_2093517_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_6|NZ_LT992470.1_2093513_2094329_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|down_7|NZ_LT992470.1_2094321_2095071_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|398aa|down_8|NZ_LT992470.1_2095082_2096276_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|249aa|down_9|NZ_LT992470.1_2096499_2097246_-	NA
GCF_900324305.1_13_LA_301	NZ_LT992470	Staphylococcus aureus isolate 13_LA_301 chromosome I	7	2131085-2131163	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	1	2131108-2131140	NZ_LT992470.1_1507427-1507395	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|220aa|up_3|NZ_LT992470.1_2128009_2128669_-,NA|36aa|up_0|NZ_LT992470.1_2130657_2130765_+,NA|56aa|down_2|NZ_LT992470.1_2135220_2135388_+	NA|693aa|up_9|NZ_LT992470.1_2120465_2122544_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_LT992470.1_2122681_2124091_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_LT992470.1_2124376_2125183_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_LT992470.1_2125245_2125902_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_LT992470.1_2126014_2126488_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_LT992470.1_2126610_2127822_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_LT992470.1_2128009_2128669_-	NA	NA|381aa|up_2|NZ_LT992470.1_2128728_2129871_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_LT992470.1_2130137_2130524_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_LT992470.1_2130657_2130765_+	NA	NA|588aa|down_0|NZ_LT992470.1_2131468_2133232_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_LT992470.1_2133256_2134990_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_LT992470.1_2135220_2135388_+	NA	NA|229aa|down_3|NZ_LT992470.1_2135442_2136129_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_LT992470.1_2136106_2137465_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_LT992470.1_2137466_2138474_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_LT992470.1_2138451_2139567_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_LT992470.1_2139577_2140270_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_LT992470.1_2140280_2140748_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_LT992470.1_2140799_2141777_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_900324305.1_13_LA_301	NZ_LT992470	Staphylococcus aureus isolate 13_LA_301 chromosome I	8	2426818-2426968	6	CRISPRCasFinder	no	TnsE_C,csa3	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Type I-A	TGCATAAGAGCCCCTTACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|31aa|up_2|NZ_LT992470.1_2425017_2425110_-,NA|53aa|up_1|NZ_LT992470.1_2425545_2425704_-,NA|35aa|up_0|NZ_LT992470.1_2426383_2426488_+,NA|364aa|down_0|NZ_LT992470.1_2426985_2428077_-,NA|77aa|down_5|NZ_LT992470.1_2431864_2432095_+	TnsE_C|135aa|up_9|NZ_LT992470.1_2418778_2419183_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|97aa|up_8|NZ_LT992470.1_2419307_2419598_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|490aa|up_7|NZ_LT992470.1_2419657_2421127_+	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|345aa|up_6|NZ_LT992470.1_2421220_2422255_+	pfam13676, TIR_2, TIR domain	NA|203aa|up_5|NZ_LT992470.1_2422282_2422891_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|261aa|up_4|NZ_LT992470.1_2423180_2423963_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_LT992470.1_2424030_2424888_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_LT992470.1_2425017_2425110_-	NA	NA|53aa|up_1|NZ_LT992470.1_2425545_2425704_-	NA	NA|35aa|up_0|NZ_LT992470.1_2426383_2426488_+	NA	NA|364aa|down_0|NZ_LT992470.1_2426985_2428077_-	NA	NA|327aa|down_1|NZ_LT992470.1_2428342_2429323_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_LT992470.1_2429324_2429645_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_LT992470.1_2429796_2430462_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_LT992470.1_2430895_2431834_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_LT992470.1_2431864_2432095_+	NA	NA|458aa|down_6|NZ_LT992470.1_2432766_2434140_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_LT992470.1_2434597_2435011_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_LT992470.1_2435210_2435654_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_LT992470.1_2435774_2436485_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_900324305.1_13_LA_301	NZ_LT992470	Staphylococcus aureus isolate 13_LA_301 chromosome I	9	2482387-2482599	7	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	47	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|107aa|up_0|NZ_LT992470.1_2482032_2482353_-,NA|46aa|down_4|NZ_LT992470.1_2485599_2485737_+	NA|147aa|up_9|NZ_LT992470.1_2473505_2473946_+	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|147aa|up_8|NZ_LT992470.1_2474002_2474443_-	pfam14183, YwpF, YwpF-like protein	NA|132aa|up_7|NZ_LT992470.1_2474636_2475032_+	pfam00436, SSB, Single-strand binding protein family	NA|232aa|up_6|NZ_LT992470.1_2475420_2476116_+	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|230aa|up_5|NZ_LT992470.1_2476502_2477192_+	TIGR04306, salvage_TenA, thiaminase II	NA|277aa|up_4|NZ_LT992470.1_2477184_2478015_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|264aa|up_3|NZ_LT992470.1_2477998_2478790_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|214aa|up_2|NZ_LT992470.1_2478791_2479433_+	PRK00043, thiE, thiamine phosphate synthase	NA|291aa|up_1|NZ_LT992470.1_2479518_2480391_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|107aa|up_0|NZ_LT992470.1_2482032_2482353_-	NA	NA|216aa|down_0|NZ_LT992470.1_2482632_2483280_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|495aa|down_1|NZ_LT992470.1_2483307_2484792_-	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|98aa|down_2|NZ_LT992470.1_2484957_2485251_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|70aa|down_3|NZ_LT992470.1_2485262_2485472_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|46aa|down_4|NZ_LT992470.1_2485599_2485737_+	NA	NA|401aa|down_5|NZ_LT992470.1_2486000_2487203_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|357aa|down_6|NZ_LT992470.1_2487520_2488591_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|452aa|down_7|NZ_LT992470.1_2488605_2489961_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|507aa|down_8|NZ_LT992470.1_2490476_2491997_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|232aa|down_9|NZ_LT992470.1_2492349_2493045_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
