The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	180285	188597	2866864	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|180285_181071_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|181196_182087_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062170.1|182096_183443_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000683941.1|183556_184657_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|184659_185337_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|185467_186574_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|186797_188597_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 2
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	258021	267064	2866864	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|258021_258540_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595008.1|258561_260835_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000749801.1|261037_263317_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|263591_263852_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|263870_265010_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019177.1|265032_266058_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005766.1|266059_267064_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 3
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	390799	439985	2866864	protease,transposase,tRNA	Staphylococcus_phage(92.11%)	48	NA	NA
WP_001050515.1|390799_397348_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
WP_000836471.1|397671_397983_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001807819.1|398004_400422_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025064.1|400709_401891_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|402000_402954_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|402950_403514_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|403632_404034_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|404606_405434_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|405436_405556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|405667_406669_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|406796_407255_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|407267_408449_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_000493892.1|408459_409092_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077346.1|409098_410142_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261672.1|410622_412125_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|412775_413090_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|413089_414382_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|414468_415323_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|415598_415823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|416021_416492_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_001153741.1|416604_417048_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030474.1|417034_417478_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001168915.1|417775_418411_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000195429.1|418647_419820_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000492903.1|419909_420530_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|421092_421806_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|422064_422367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|422621_422987_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|422983_423337_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|423586_424420_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|424631_425540_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|425664_426858_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|427229_428822_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|429118_429865_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|429869_430343_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|430408_430666_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778553.1|430662_431664_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|431668_433147_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|433305_433761_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|434063_434726_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|434806_435802_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|435877_436504_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|436544_436889_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|436986_437559_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|437756_438314_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|438684_438861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|438871_439255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|439703_439985_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
>prophage 4
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	529789	572727	2866864	protease,integrase,transposase,tRNA	Staphylococcus_phage(28.57%)	37	555742:555758	577550:577566
WP_000545368.1|529789_531217_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027924.1|531229_532687_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|532688_532991_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957030.1|533357_534896_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|534984_536184_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774571.1|536196_538200_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	4.4e-114
WP_000992924.1|538203_540396_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272065.1|540392_541085_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|541256_541559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|541667_542963_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827738.1|543811_544978_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434536.1|545008_545332_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|545624_545798_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|545778_546381_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040870.1|546650_547472_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	6.1e-70
WP_000284428.1|547464_548934_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.9	1.7e-107
WP_000897642.1|549117_550194_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177819.1|550213_551008_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|551079_551187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323172.1|551197_552760_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275718.1|552964_554062_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|554433_554994_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|555046_555976_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
555742:555758	attL	AGATTTAGAAAAAGAAA	NA	NA	NA	NA
WP_001826057.1|556168_556342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021224.1|556393_557773_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181321.1|557892_558921_-	lactonase family protein	NA	NA	NA	NA	NA
WP_001284658.1|559380_559761_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096367.1|559750_561508_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733622.1|561614_562460_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.9	4.4e-31
WP_000612779.1|562773_563184_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	53.5	3.1e-30
WP_000195429.1|563575_564748_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001028144.1|564877_566317_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000393259.1|566317_566710_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_000195429.1|566766_567939_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000410574.1|569174_569540_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000026850.1|569548_571612_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_031775878.1|571614_572727_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.6	1.7e-11
577550:577566	attR	AGATTTAGAAAAAGAAA	NA	NA	NA	NA
>prophage 5
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	586842	632938	2866864	holin,integrase,tail,portal,protease,head,capsid,terminase	Staphylococcus_phage(98.48%)	67	605694:605711	630922:630939
WP_000669789.1|586842_587022_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|587332_587593_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|587645_587996_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727643.1|588678_589128_+	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000920041.1|590205_590697_-	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000861038.1|590888_591644_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|591655_591910_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|591961_592069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072357969.1|592121_592298_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	6.5e-22
WP_000539688.1|592449_592746_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|592803_593091_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|593137_593290_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_114636066.1|593279_597065_-	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.7	0.0e+00
WP_000567408.1|597080_598565_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_114636067.1|598561_603091_-|tail	phage tail tape measure protein	tail	W5R8I2	Staphylococcus_phage	91.8	0.0e+00
WP_001096353.1|603335_603686_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	99.1	3.0e-58
WP_114636068.1|603735_604041_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	1.5e-29
WP_114636069.1|604001_604643_-|tail	phage tail protein	tail	A0A1W6JPP5	Staphylococcus_phage	98.6	6.1e-118
WP_086095461.1|604643_605051_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	96.3	3.7e-68
WP_000114341.1|605047_605452_-	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000755150.1|605448_605811_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
605694:605711	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|605794_606079_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238240.1|606068_606353_-	hypothetical protein	NA	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
WP_033857025.1|606372_607518_-|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	99.5	2.1e-214
WP_033857027.1|607540_608278_-|protease	Clp protease ClpP	protease	Q8LTH1	Staphylococcus_phage	99.6	1.4e-129
WP_114636070.1|608261_609434_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	98.0	6.4e-214
WP_000625085.1|609449_611111_-|terminase	terminase large subunit	terminase	A0A075M4D3	Staphylococcus_phage	99.8	0.0e+00
WP_000402904.1|611107_611452_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988333.1|611581_611881_-	HNH endonuclease	NA	A0A1W6JPL7	Staphylococcus_phage	100.0	2.7e-52
WP_000590122.1|612112_612529_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001794311.1|612556_612757_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
WP_114636071.1|612756_612906_-	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	1.4e-17
WP_001596346.1|612902_613292_-	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.6e-65
WP_000608275.1|613281_613518_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|613510_613714_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|613710_613917_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_031881549.1|613953_614490_-	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	99.4	4.6e-95
WP_000714407.1|614482_614653_-	hypothetical protein	NA	A0A1W6JQ22	Staphylococcus_phage	100.0	5.7e-23
WP_114636072.1|614639_614894_-	DUF1024 family protein	NA	A0A2I6PDI5	Staphylococcus_phage	96.4	7.2e-38
WP_000131370.1|614908_615151_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_114636073.1|615154_615523_-	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	94.3	9.7e-52
WP_000401960.1|615535_615940_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|615948_616167_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148335.1|616173_617067_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	100.0	8.4e-142
WP_000610650.1|617096_617567_-	single-stranded DNA-binding protein	NA	A0A2I6PDH4	Staphylococcus_phage	100.0	5.7e-81
WP_114636074.1|617567_618185_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	98.8	1.0e-85
WP_031763788.1|618265_619186_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	99.7	6.6e-166
WP_174220649.1|619187_621143_-	AAA family ATPase	NA	R9QT82	Staphylococcus_phage	99.5	0.0e+00
WP_001205732.1|621139_621403_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_031763794.1|621411_621672_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	97.7	1.5e-43
WP_000165371.1|621676_621979_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|622073_622235_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|622231_622555_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762521.1|622609_622990_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001148856.1|622976_623174_-	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_001148337.1|623189_623939_-	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_000351243.1|623995_624535_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|624558_624819_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000213811.1|624866_625079_-	helix-turn-helix transcriptional regulator	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
WP_031924696.1|625230_625962_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	75.9	2.2e-95
WP_000759682.1|625977_626910_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|626915_627257_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705241.1|627459_627627_+	hypothetical protein	NA	U5U774	Staphylococcus_phage	100.0	1.7e-24
WP_000440838.1|627766_628471_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	100.0	4.6e-127
WP_000857198.1|628664_629702_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000595612.1|630844_631861_-	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	29.3	1.1e-25
630922:630939	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791397.1|631882_632938_-	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	35.4	8.7e-37
>prophage 6
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	1807368	1816912	2866864	integrase	Staphylococcus_phage(33.33%)	11	1810390:1810410	1824152:1824172
WP_000264071.1|1807368_1808835_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424968.1|1808859_1810401_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
1810390:1810410	attL	GAGTGGGAATAATTATATATA	NA	NA	NA	NA
WP_031869372.1|1810494_1811631_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	6.0e-76
WP_031588064.1|1811714_1812101_-	helix-turn-helix transcriptional regulator	NA	U3PIS7	Lactobacillus_phage	41.2	3.8e-06
WP_031588042.1|1812233_1812473_+	helix-turn-helix transcriptional regulator	NA	Q38329	Lactococcus_phage	40.0	2.5e-08
WP_000080597.1|1812469_1812730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162852058.1|1812776_1812923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031774950.1|1812915_1813140_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	58.8	7.5e-15
WP_001103957.1|1813140_1813434_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	46.1	1.7e-14
WP_031593609.1|1813524_1815897_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	3.7e-136
WP_001082128.1|1816567_1816912_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	64.3	1.2e-40
1824152:1824172	attR	GAGTGGGAATAATTATATATA	NA	NA	NA	NA
>prophage 7
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	2152907	2160727	2866864		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|2152907_2153963_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|2153962_2154649_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037805.1|2154623_2155097_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093559.1|2155437_2155878_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637685.1|2156158_2156743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062967.1|2156841_2157555_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	5.0e-52
WP_000941336.1|2157558_2157978_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|2157979_2158648_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604516.1|2158998_2159592_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_001217786.1|2159575_2160727_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 8
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	2172697	2187013	2866864		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663034.1|2172697_2173756_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
WP_000197271.1|2173914_2174457_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429003.1|2175193_2176111_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_014936998.1|2176201_2176309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|2176380_2177886_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|2178225_2178726_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068490.1|2178745_2179612_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|2180413_2180812_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|2180774_2182880_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|2182999_2183971_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|2184340_2185312_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245567.1|2185298_2186255_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000616865.1|2186251_2187013_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 9
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	2275819	2320616	2866864	holin,integrase,tail,portal,plate,head,capsid,terminase	Staphylococcus_phage(83.33%)	71	2270680:2270695	2327400:2327415
2270680:2270695	attL	AAAGAATTACCAAAAG	NA	NA	NA	NA
WP_001825559.1|2275819_2277070_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.3e-111
WP_001010508.1|2277059_2277524_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|2277674_2279072_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145730.1|2279139_2280189_-|integrase	site-specific integrase	integrase	A0A0H4ISP4	Staphylococcus_phage	100.0	2.7e-203
WP_016187262.1|2280255_2280498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021285964.1|2280508_2281492_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000142628.1|2281543_2282218_-	LexA family transcriptional regulator	NA	A0A1W6JPS3	Staphylococcus_phage	92.0	2.3e-115
WP_016187264.1|2282409_2282649_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J3I3	uncultured_Caudovirales_phage	88.6	9.4e-32
WP_001153175.1|2282663_2282825_+	hypothetical protein	NA	Q4ZBN4	Staphylococcus_phage	100.0	1.9e-20
WP_021285963.1|2282817_2283054_-	hypothetical protein	NA	Q4ZBN3	Staphylococcus_phage	97.4	8.7e-38
WP_001576117.1|2283118_2283859_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.6	1.8e-134
WP_001555746.1|2283883_2284099_+	hypothetical protein	NA	E9LT76	Staphylococcus_phage	98.6	5.0e-32
WP_016187267.1|2284054_2284300_-	hypothetical protein	NA	E9LT77	Staphylococcus_phage	96.3	1.4e-35
WP_000977381.1|2284370_2284592_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_000048124.1|2284584_2284746_+	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
WP_114636090.1|2284848_2285151_+	DUF2482 family protein	NA	A0A0K1LKL3	Staphylococcus_phage	71.0	9.1e-32
WP_031794902.1|2285155_2285416_+	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	87.2	1.5e-38
WP_000815403.1|2285425_2285647_+	DUF2483 family protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_000139720.1|2285639_2286263_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_031867689.1|2286262_2286688_+	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	97.2	6.1e-66
WP_031867690.1|2286701_2287376_+	phi PV83 orf 19-like protein	NA	Q9MBS0	Staphylococcus_prophage	98.2	1.2e-127
WP_001037657.1|2287368_2288124_+	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_001132247.1|2288123_2288480_+	hypothetical protein	NA	B7T0A8	Staphylococcus_virus	97.5	2.2e-61
WP_031794787.1|2288476_2289718_+	AAA family ATPase	NA	Q4ZCW6	Staphylococcus_virus	99.8	5.7e-229
WP_031794786.1|2289714_2289930_+	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	98.6	1.8e-34
WP_001123688.1|2289932_2290154_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000049794.1|2290163_2290568_+	DUF1064 domain-containing protein	NA	A1KX76	Staphylococcus_virus	100.0	9.6e-69
WP_001187243.1|2290572_2290758_+	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000101252.1|2290758_2291064_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_001557189.1|2291191_2291548_+	phage protein	NA	A0A0F6N3E3	Staphylococcus_phage	99.2	7.2e-60
WP_031837732.1|2291551_2291794_+	phage protein	NA	A1KX80	Staphylococcus_virus	95.0	6.8e-38
WP_000693989.1|2291807_2292014_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_000695771.1|2292016_2292424_+	hypothetical protein	NA	M9NST1	Staphylococcus_phage	98.5	2.6e-74
WP_031837730.1|2292420_2292615_+	hypothetical protein	NA	A0A0U2A067	Staphylococcus_phage	96.8	1.1e-25
WP_000982714.1|2292611_2293049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105602.1|2293045_2293411_+	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	97.3	7.4e-52
WP_031795590.1|2293403_2293652_+	DUF1024 family protein	NA	A0A0E3T8I2	Staphylococcus_phage	97.6	2.0e-37
WP_000185680.1|2293644_2294181_+	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_000195803.1|2294217_2294424_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_031795332.1|2294420_2294804_+	phage protein	NA	A0A0H3U465	Staphylococcus_phage	98.4	4.8e-62
WP_031837681.1|2294803_2294977_+	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	96.5	2.4e-21
WP_000989998.1|2294977_2295124_+	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
WP_000162701.1|2295147_2295570_+	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_000594088.1|2295900_2296395_+|terminase	terminase small subunit	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037578.1|2296387_2297611_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_016187272.1|2297607_2299032_+|portal	phage portal protein	portal	M9NS48	Staphylococcus_phage	100.0	7.4e-273
WP_000184140.1|2299000_2299951_+|head	phage head morphogenesis protein	head	M9NST7	Staphylococcus_phage	100.0	2.3e-177
WP_000440857.1|2299954_2300188_+	hypothetical protein	NA	M9NUJ2	Staphylococcus_phage	100.0	2.5e-37
WP_016187273.1|2300291_2300876_+	DUF4355 domain-containing protein	NA	M9NRJ1	Staphylococcus_phage	100.0	9.0e-76
WP_016187274.1|2300892_2301807_+|capsid	phage major capsid protein	capsid	M9NTC2	Staphylococcus_phage	100.0	3.4e-170
WP_000002930.1|2301818_2301962_+	hypothetical protein	NA	A0A059T673	Staphylococcus_phage	100.0	7.9e-18
WP_016187275.1|2301967_2302318_+	hypothetical protein	NA	M9NST9	Staphylococcus_phage	100.0	1.4e-60
WP_021285837.1|2302329_2302665_+|head	phage head closure protein	head	M9NUJ3	Staphylococcus_phage	100.0	3.9e-60
WP_021285836.1|2302651_2303059_+	HK97 gp10 family phage protein	NA	A0A059T7Q2	Staphylococcus_phage	97.0	2.5e-72
WP_016187278.1|2303071_2303497_+	DUF3168 domain-containing protein	NA	M9NTC5	Staphylococcus_phage	100.0	1.6e-74
WP_114636098.1|2303492_2304056_+|tail	phage tail protein	tail	A0A059T675	Staphylococcus_phage	99.5	1.0e-100
WP_000134336.1|2304122_2304635_+	hypothetical protein	NA	A0A059T5B1	Staphylococcus_phage	100.0	5.4e-93
WP_025176538.1|2304679_2304964_+	hypothetical protein	NA	A0A059T626	Staphylococcus_phage	96.8	1.2e-44
WP_021285835.1|2304967_2307853_+|terminase	terminase	terminase	M9NRJ5	Staphylococcus_phage	100.0	0.0e+00
WP_021285834.1|2307867_2308809_+|tail	phage tail family protein	tail	Q4ZBQ4	Staphylococcus_phage	99.0	2.6e-181
WP_016187282.1|2308819_2310706_+|tail	phage tail protein	tail	M9NS58	Staphylococcus_phage	100.0	0.0e+00
WP_016187283.1|2310718_2312617_+	hypothetical protein	NA	M9NSU3	Staphylococcus_phage	100.0	0.0e+00
WP_016187284.1|2312616_2314440_+|plate	BppU family phage baseplate upper protein	plate	M9NUJ5	Staphylococcus_phage	100.0	1.5e-299
WP_016187285.1|2314439_2314817_+	DUF2977 domain-containing protein	NA	M9NRJ7	Staphylococcus_phage	100.0	1.1e-61
WP_001800921.1|2314826_2315000_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_016187457.1|2315477_2317352_+	glucosaminidase domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	96.5	0.0e+00
WP_016187459.1|2317834_2318089_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	98.8	1.2e-40
WP_016187460.1|2318100_2318856_+	CHAP domain-containing protein	NA	Q4ZCZ2	Staphylococcus_virus	98.8	1.7e-151
WP_000201920.1|2319499_2319679_+	hypothetical protein	NA	M9QYR8	Staphylococcus_phage	100.0	4.1e-24
WP_000455172.1|2319700_2320228_+	DUF4065 domain-containing protein	NA	M9QX37	Staphylococcus_phage	99.4	1.3e-97
WP_043854724.1|2320199_2320616_+	hypothetical protein	NA	M9QRV7	Staphylococcus_phage	99.3	5.4e-75
2327400:2327415	attR	AAAGAATTACCAAAAG	NA	NA	NA	NA
>prophage 10
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	2369885	2393110	2866864	integrase	Streptococcus_phage(94.74%)	23	2358342:2358359	2397385:2397402
2358342:2358359	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
WP_000154905.1|2369885_2373539_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
WP_000670757.1|2373704_2374607_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000902814.1|2374933_2375323_+	YisL family protein	NA	NA	NA	NA	NA
WP_001291561.1|2375587_2376805_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|2376886_2377090_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|2377550_2377781_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|2377777_2378200_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|2378704_2379058_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|2379117_2379285_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691736.1|2379403_2381323_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_001814923.1|2381338_2381455_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224318.1|2381699_2382632_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_000769868.1|2382628_2383630_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|2383626_2385804_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000331163.1|2385806_2388254_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.9	0.0e+00
WP_000506270.1|2388237_2388744_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|2388718_2389216_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|2389332_2389554_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_114636091.1|2389596_2390802_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	99.5	5.3e-232
WP_000879507.1|2390824_2390977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|2390979_2392365_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|2392393_2392780_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|2392795_2393110_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
2397385:2397402	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 11
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	2399756	2461111	2866864	holin,bacteriocin,transposase,protease,tRNA	Planktothrix_phage(20.0%)	55	NA	NA
WP_000195429.1|2399756_2400929_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000353948.1|2401241_2403851_+	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001047061.1|2403909_2404779_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000700886.1|2404909_2405425_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000769695.1|2405735_2406170_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000682089.1|2406426_2406612_-	YjzD family protein	NA	NA	NA	NA	NA
WP_001100526.1|2406906_2407848_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_000081234.1|2407859_2409104_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_000915159.1|2409158_2409530_-	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_000521531.1|2409772_2410699_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000829637.1|2410698_2411769_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000140050.1|2411784_2412867_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
WP_000786744.1|2412856_2413798_+	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	9.3e-06
WP_000197091.1|2413816_2415472_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001807927.1|2415641_2416577_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000234063.1|2416566_2417586_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_162829041.1|2417601_2418681_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.4	5.4e-18
WP_001064121.1|2418670_2419597_+	ABC transporter ATP-binding protein	NA	M1I1A6	Acanthocystis_turfacea_Chlorella_virus	23.9	3.5e-05
WP_000406183.1|2419624_2421247_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000448934.1|2421366_2422356_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|2422650_2423046_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217731.1|2423416_2424136_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959279.1|2424256_2425243_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082727.1|2425290_2427099_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
WP_000896695.1|2427558_2428365_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|2428387_2428753_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224612.1|2428856_2429450_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242104.1|2429635_2429983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|2429999_2430635_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|2430651_2431461_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669942.1|2431457_2432312_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|2432332_2433718_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|2433727_2435572_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933200.1|2435849_2436620_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|2436816_2437902_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570705.1|2438243_2439812_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889181.1|2439953_2440712_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|2440905_2441415_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154224.1|2441527_2442718_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|2442695_2443871_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340124.1|2444301_2445786_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_072434963.1|2445766_2446027_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049947.1|2446026_2447589_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
WP_000928413.1|2447890_2448694_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_014937014.1|2448912_2451237_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|2451253_2452612_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414168.1|2452750_2454262_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287260.1|2454750_2455320_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|2455529_2455748_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668814.1|2455828_2456815_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|2457013_2457190_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|2457204_2457807_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|2458106_2458184_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_000790905.1|2458818_2459103_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870811.1|2459146_2461111_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
>prophage 12
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	2493163	2501636	2866864		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807816.1|2493163_2493646_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010409.1|2493632_2494757_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174055.1|2494760_2495465_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_000848351.1|2495464_2495728_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|2495729_2496401_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032750.1|2496393_2498583_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000483707.1|2498561_2500046_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000030815.1|2500038_2501067_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|2501069_2501636_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 13
NZ_LT992467	Staphylococcus aureus isolate 16_LA_309 chromosome I	2866864	2757908	2763096	2866864		Staphylococcus_phage(66.67%)	8	NA	NA
WP_001807853.1|2757908_2758106_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_074347689.1|2758792_2759020_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001002341.1|2759320_2759527_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_001788716.1|2760227_2760338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|2760730_2760916_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477490.1|2761426_2761843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974166.1|2762274_2762859_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_001215406.1|2762922_2763096_-	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
