assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900324285.1_4_LA_208	NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	1	513534-513667	1	PILER-CR	no		csa3,WYL,TnsE_C,DEDDh,cas3,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	NA,NA|103aa|down_1|NZ_LT992466.1_518801_519110_-,NA|89aa|down_2|NZ_LT992466.1_519253_519520_-	NA|388aa|up_9|NZ_LT992466.1_497847_499011_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|204aa|up_8|NZ_LT992466.1_499108_499720_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_7|NZ_LT992466.1_500266_501544_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_6|NZ_LT992466.1_502455_504279_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_5|NZ_LT992466.1_504417_504834_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_4|NZ_LT992466.1_505064_505757_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_3|NZ_LT992466.1_505921_506686_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_2|NZ_LT992466.1_506842_507520_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_1|NZ_LT992466.1_507544_509098_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_0|NZ_LT992466.1_509214_510573_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|289aa|down_0|NZ_LT992466.1_517809_518676_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992466.1_518801_519110_-	NA	NA|89aa|down_2|NZ_LT992466.1_519253_519520_-	NA	NA|584aa|down_3|NZ_LT992466.1_519803_521555_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992466.1_521630_522824_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992466.1_522919_523849_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992466.1_524091_524865_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992466.1_524976_525741_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992466.1_525988_526774_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992466.1_526770_528126_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324285.1_4_LA_208	NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2	517078-517211	2	PILER-CR	no		csa3,WYL,TnsE_C,DEDDh,cas3,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	NA,NA|103aa|down_1|NZ_LT992466.1_518801_519110_-,NA|89aa|down_2|NZ_LT992466.1_519253_519520_-	NA|204aa|up_9|NZ_LT992466.1_499108_499720_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_LT992466.1_500266_501544_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_LT992466.1_502455_504279_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_LT992466.1_504417_504834_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_LT992466.1_505064_505757_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_LT992466.1_505921_506686_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_3|NZ_LT992466.1_506842_507520_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_LT992466.1_507544_509098_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_LT992466.1_509214_510573_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1018aa|up_0|NZ_LT992466.1_511041_514095_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_LT992466.1_517809_518676_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992466.1_518801_519110_-	NA	NA|89aa|down_2|NZ_LT992466.1_519253_519520_-	NA	NA|584aa|down_3|NZ_LT992466.1_519803_521555_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992466.1_521630_522824_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992466.1_522919_523849_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992466.1_524091_524865_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992466.1_524976_525741_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992466.1_525988_526774_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992466.1_526770_528126_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324285.1_4_LA_208	NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	3	541675-541769	1	CRISPRCasFinder	no		csa3,WYL,TnsE_C,DEDDh,cas3,DinG	Orphan	TTGCTTCGCAACAACTGCATAAGAGCCT	28	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	NA|105aa|up_8|NZ_LT992466.1_533516_533831_-,NA|121aa|up_0|NZ_LT992466.1_540643_541006_+,NA|249aa|down_9|NZ_LT992466.1_551436_552183_-	NA|140aa|up_9|NZ_LT992466.1_531220_531640_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|105aa|up_8|NZ_LT992466.1_533516_533831_-	NA	NA|403aa|up_7|NZ_LT992466.1_533836_535045_-	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|128aa|up_6|NZ_LT992466.1_535111_535495_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|up_5|NZ_LT992466.1_535949_536360_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|133aa|up_4|NZ_LT992466.1_536386_536785_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|141aa|up_3|NZ_LT992466.1_537256_537679_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|513aa|up_2|NZ_LT992466.1_537790_539329_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|273aa|up_1|NZ_LT992466.1_539562_540381_+	PRK08589, PRK08589, SDR family oxidoreductase	NA|121aa|up_0|NZ_LT992466.1_540643_541006_+	NA	NA|274aa|down_0|NZ_LT992466.1_541954_542776_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|273aa|down_1|NZ_LT992466.1_542786_543605_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|434aa|down_2|NZ_LT992466.1_543597_544899_+	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|533aa|down_3|NZ_LT992466.1_545041_546640_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|312aa|down_4|NZ_LT992466.1_546652_547588_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_5|NZ_LT992466.1_547584_548454_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_6|NZ_LT992466.1_548450_549266_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|down_7|NZ_LT992466.1_549258_550008_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|398aa|down_8|NZ_LT992466.1_550019_551213_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|249aa|down_9|NZ_LT992466.1_551436_552183_-	NA
GCF_900324285.1_4_LA_208	NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	4	586023-586101	2	CRISPRCasFinder	no		csa3,WYL,TnsE_C,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	1	586046-586078	NZ_LT992466.1_2742785-2742753	NA	1	1	Orphan	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	NA|220aa|up_3|NZ_LT992466.1_582947_583607_-,NA|36aa|up_0|NZ_LT992466.1_585595_585703_+,NA|56aa|down_2|NZ_LT992466.1_590158_590326_+	NA|693aa|up_9|NZ_LT992466.1_575402_577481_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_LT992466.1_577618_579028_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_LT992466.1_579314_580121_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_LT992466.1_580183_580840_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_LT992466.1_580952_581426_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_LT992466.1_581548_582760_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_LT992466.1_582947_583607_-	NA	NA|381aa|up_2|NZ_LT992466.1_583666_584809_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_LT992466.1_585075_585462_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_LT992466.1_585595_585703_+	NA	NA|588aa|down_0|NZ_LT992466.1_586406_588170_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_LT992466.1_588194_589928_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_LT992466.1_590158_590326_+	NA	NA|229aa|down_3|NZ_LT992466.1_590380_591067_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_LT992466.1_591044_592403_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_LT992466.1_592404_593412_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_LT992466.1_593389_594505_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_LT992466.1_594515_595208_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_LT992466.1_595218_595686_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_LT992466.1_595737_596715_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_900324285.1_4_LA_208	NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	5	717894-717979	3	CRISPRCasFinder	no	WYL	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	6	717924-717949|717924-717949|717924-717949|717924-717949|717924-717949|717924-717949	NZ_LT992466.1_1431613-1431588|NZ_LT992466.1_2186329-2186304|NZ_LT992466.1_926516-926541|NZ_LT992466.1_1700297-1700322|NZ_LT992466.1_2137224-2137249|NZ_LT992466.1_2182159-2182184	NA	1	1	Orphan	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	NA|110aa|up_8|NZ_LT992466.1_708291_708621_-,NA|78aa|up_1|NZ_LT992466.1_716709_716943_+,NA|65aa|down_6|NZ_LT992466.1_725039_725234_+	NA|291aa|up_9|NZ_LT992466.1_706974_707847_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|110aa|up_8|NZ_LT992466.1_708291_708621_-	NA	NA|246aa|up_7|NZ_LT992466.1_708669_709407_+	pfam02517, Abi, CAAX protease self-immunity	WYL|231aa|up_6|NZ_LT992466.1_709431_710124_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|266aa|up_5|NZ_LT992466.1_710508_711306_+	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|316aa|up_4|NZ_LT992466.1_711438_712386_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|985aa|up_3|NZ_LT992466.1_712987_715942_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|158aa|up_2|NZ_LT992466.1_715941_716415_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|78aa|up_1|NZ_LT992466.1_716709_716943_+	NA	NA|259aa|up_0|NZ_LT992466.1_716964_717741_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|375aa|down_0|NZ_LT992466.1_718349_719474_+	PRK06753, PRK06753, hypothetical protein; Provisional	NA|318aa|down_1|NZ_LT992466.1_719565_720519_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|167aa|down_2|NZ_LT992466.1_720881_721382_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|141aa|down_3|NZ_LT992466.1_721618_722041_-	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|361aa|down_4|NZ_LT992466.1_722288_723371_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|467aa|down_5|NZ_LT992466.1_723465_724866_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|65aa|down_6|NZ_LT992466.1_725039_725234_+	NA	NA|270aa|down_7|NZ_LT992466.1_725302_726112_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|652aa|down_8|NZ_LT992466.1_726721_728677_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|248aa|down_9|NZ_LT992466.1_728702_729446_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family
GCF_900324285.1_4_LA_208	NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	6	881872-882022	4	CRISPRCasFinder	no	TnsE_C,csa3	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	Type I-A	TGCATAAGAGCCCCTTACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	NA|31aa|up_2|NZ_LT992466.1_880071_880164_-,NA|53aa|up_1|NZ_LT992466.1_880599_880758_-,NA|35aa|up_0|NZ_LT992466.1_881437_881542_+,NA|364aa|down_0|NZ_LT992466.1_882039_883131_-,NA|77aa|down_5|NZ_LT992466.1_886918_887149_+	TnsE_C|135aa|up_9|NZ_LT992466.1_873832_874237_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|97aa|up_8|NZ_LT992466.1_874361_874652_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|490aa|up_7|NZ_LT992466.1_874711_876181_+	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|345aa|up_6|NZ_LT992466.1_876274_877309_+	pfam13676, TIR_2, TIR domain	NA|203aa|up_5|NZ_LT992466.1_877336_877945_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|261aa|up_4|NZ_LT992466.1_878234_879017_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_LT992466.1_879084_879942_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_LT992466.1_880071_880164_-	NA	NA|53aa|up_1|NZ_LT992466.1_880599_880758_-	NA	NA|35aa|up_0|NZ_LT992466.1_881437_881542_+	NA	NA|364aa|down_0|NZ_LT992466.1_882039_883131_-	NA	NA|327aa|down_1|NZ_LT992466.1_883396_884377_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_LT992466.1_884378_884699_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_LT992466.1_884850_885516_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_LT992466.1_885949_886888_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_LT992466.1_886918_887149_+	NA	NA|458aa|down_6|NZ_LT992466.1_887820_889194_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_LT992466.1_889651_890065_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_LT992466.1_890264_890708_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_LT992466.1_890828_891539_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_900324285.1_4_LA_208	NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	7	937441-937653	5	CRISPRCasFinder	no		csa3,WYL,TnsE_C,DEDDh,cas3,DinG	Orphan	CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	47	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	NA|107aa|up_0|NZ_LT992466.1_937086_937407_-,NA|46aa|down_4|NZ_LT992466.1_940653_940791_+	NA|147aa|up_9|NZ_LT992466.1_928559_929000_+	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|147aa|up_8|NZ_LT992466.1_929056_929497_-	pfam14183, YwpF, YwpF-like protein	NA|132aa|up_7|NZ_LT992466.1_929690_930086_+	pfam00436, SSB, Single-strand binding protein family	NA|232aa|up_6|NZ_LT992466.1_930474_931170_+	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|230aa|up_5|NZ_LT992466.1_931556_932246_+	TIGR04306, salvage_TenA, thiaminase II	NA|277aa|up_4|NZ_LT992466.1_932238_933069_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|264aa|up_3|NZ_LT992466.1_933052_933844_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|214aa|up_2|NZ_LT992466.1_933845_934487_+	PRK00043, thiE, thiamine phosphate synthase	NA|291aa|up_1|NZ_LT992466.1_934572_935445_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|107aa|up_0|NZ_LT992466.1_937086_937407_-	NA	NA|216aa|down_0|NZ_LT992466.1_937686_938334_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|495aa|down_1|NZ_LT992466.1_938361_939846_-	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|98aa|down_2|NZ_LT992466.1_940011_940305_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|70aa|down_3|NZ_LT992466.1_940316_940526_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|46aa|down_4|NZ_LT992466.1_940653_940791_+	NA	NA|401aa|down_5|NZ_LT992466.1_941054_942257_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|357aa|down_6|NZ_LT992466.1_942574_943645_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|452aa|down_7|NZ_LT992466.1_943659_945015_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|507aa|down_8|NZ_LT992466.1_945530_947051_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|232aa|down_9|NZ_LT992466.1_947403_948099_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_900324285.1_4_LA_208	NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	8	1309075-1309157	6	CRISPRCasFinder	no		csa3,WYL,TnsE_C,DEDDh,cas3,DinG	Orphan	GTAAGCTGACTTTTTCGTCAGCTTC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	NA,NA	NA|383aa|up_9|NZ_LT992466.1_1298598_1299747_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|408aa|up_8|NZ_LT992466.1_1299746_1300970_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|257aa|up_7|NZ_LT992466.1_1301013_1301784_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|165aa|up_6|NZ_LT992466.1_1301881_1302376_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_5|NZ_LT992466.1_1302498_1303446_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_4|NZ_LT992466.1_1303533_1304736_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_3|NZ_LT992466.1_1304982_1305483_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_2|NZ_LT992466.1_1305623_1306742_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|352aa|up_1|NZ_LT992466.1_1307057_1308113_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_0|NZ_LT992466.1_1308287_1308977_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|down_0|NZ_LT992466.1_1309482_1309896_-	pfam00582, Usp, Universal stress protein family	NA|433aa|down_1|NZ_LT992466.1_1310100_1311399_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_2|NZ_LT992466.1_1311768_1312710_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_3|NZ_LT992466.1_1312730_1315928_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_4|NZ_LT992466.1_1316376_1317606_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_5|NZ_LT992466.1_1317800_1318658_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_6|NZ_LT992466.1_1318657_1319602_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_7|NZ_LT992466.1_1319870_1320839_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_8|NZ_LT992466.1_1320860_1322618_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_9|NZ_LT992466.1_1322961_1324323_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
GCF_900324285.1_4_LA_208	NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	9	2181906-2181986	7	CRISPRCasFinder	no		csa3,WYL,TnsE_C,DEDDh,cas3,DinG	Orphan	GGGAGTGGGAGAGAAATGATAAAGA	25	1	1	2181931-2181961	NZ_LT992466.1_2236915-2236885	NA	1	1	Orphan	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	NA|105aa|up_7|NZ_LT992466.1_2173984_2174299_+,NA	NA|356aa|up_9|NZ_LT992466.1_2171494_2172562_-	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|347aa|up_8|NZ_LT992466.1_2172575_2173616_-	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|105aa|up_7|NZ_LT992466.1_2173984_2174299_+	NA	NA|466aa|up_6|NZ_LT992466.1_2174630_2176028_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|155aa|up_5|NZ_LT992466.1_2176178_2176643_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|417aa|up_4|NZ_LT992466.1_2176632_2177883_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_3|NZ_LT992466.1_2177988_2179296_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_2|NZ_LT992466.1_2179394_2180156_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_1|NZ_LT992466.1_2180483_2181335_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_0|NZ_LT992466.1_2181568_2181763_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|down_0|NZ_LT992466.1_2182570_2183392_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|down_1|NZ_LT992466.1_2183409_2184105_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|down_2|NZ_LT992466.1_2184097_2185123_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|down_3|NZ_LT992466.1_2185372_2185669_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|down_4|NZ_LT992466.1_2185661_2186048_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_5|NZ_LT992466.1_2186749_2187628_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_6|NZ_LT992466.1_2187807_2188188_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_7|NZ_LT992466.1_2188345_2188702_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_8|NZ_LT992466.1_2188845_2189166_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_9|NZ_LT992466.1_2189315_2189855_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA
GCF_900324285.1_4_LA_208	NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	10	2393513-2393621	8	CRISPRCasFinder	no		csa3,WYL,TnsE_C,DEDDh,cas3,DinG	Orphan	TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	39	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,TnsE_C,DEDDh,cas3,DinG	NA|239aa|up_5|NZ_LT992466.1_2388394_2389111_-,NA|169aa|up_4|NZ_LT992466.1_2389272_2389779_-,NA	NA|75aa|up_9|NZ_LT992466.1_2384517_2384742_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_LT992466.1_2384934_2385864_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_LT992466.1_2386811_2387186_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_LT992466.1_2387437_2388226_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_LT992466.1_2388394_2389111_-	NA	NA|169aa|up_4|NZ_LT992466.1_2389272_2389779_-	NA	NA|267aa|up_3|NZ_LT992466.1_2389914_2390715_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_LT992466.1_2390698_2391418_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_LT992466.1_2391472_2392423_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_LT992466.1_2392573_2393461_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_LT992466.1_2393790_2394426_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_LT992466.1_2394910_2396572_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_LT992466.1_2396568_2396985_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_LT992466.1_2397260_2398271_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_LT992466.1_2398769_2399291_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_LT992466.1_2399318_2400614_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_LT992466.1_2400653_2401130_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_LT992466.1_2401299_2401836_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_LT992466.1_2402281_2403220_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_LT992466.1_2403489_2404116_-	pfam04276, DUF443, Protein of unknown function (DUF443)
