The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2789928	1006183	1077030	2789928	holin,transposase,tail,integrase,head,protease,portal,terminase,capsid	Staphylococcus_phage(94.29%)	90	1017550:1017567	1085786:1085803
WP_000197638.1|1006183_1006927_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|1007101_1007386_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|1007461_1009078_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000201398.1|1009618_1009798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000216896.1|1009794_1010421_+	hypothetical protein	NA	C8CH40	Staphylococcus_phage	44.5	2.4e-42
WP_001045074.1|1010959_1012267_-	potassium transporter KtrB	NA	NA	NA	NA	NA
WP_000206618.1|1012649_1013873_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791397.1|1014304_1015360_+	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	35.4	8.7e-37
WP_000595612.1|1015381_1016398_+	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	29.3	1.1e-25
WP_000857198.1|1017540_1018578_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
1017550:1017567	attL	TTCTAAAATTTTAGTTGT	NA	NA	NA	NA
WP_017804779.1|1018770_1019475_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	99.6	6.7e-126
WP_000705238.1|1019614_1019782_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_001089804.1|1019981_1020167_-	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_001049399.1|1020153_1020309_-	hypothetical protein	NA	A0A2I6PDR9	Staphylococcus_phage	100.0	6.3e-21
WP_001566740.1|1020320_1021052_-	helix-turn-helix transcriptional regulator	NA	A0A075LYE4	Staphylococcus_phage	75.8	9.8e-88
WP_000213811.1|1021203_1021416_+	helix-turn-helix transcriptional regulator	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
WP_000435341.1|1021463_1021724_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_061385157.1|1021747_1022287_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	99.4	2.2e-97
WP_001148337.1|1022343_1023093_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_001148861.1|1023108_1023306_+	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_000939496.1|1023336_1023477_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_000275058.1|1023491_1024124_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_001120197.1|1024182_1024503_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000066017.1|1024499_1024661_+	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_000165375.1|1024755_1025082_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	100.0	1.2e-53
WP_000291503.1|1025062_1025323_+	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
WP_001205732.1|1025331_1025595_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_061736933.1|1025603_1027547_+	AAA family ATPase	NA	A0A0E3T8H3	Staphylococcus_phage	98.9	0.0e+00
WP_000138475.1|1027548_1028469_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_078158007.1|1028549_1029167_+	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	99.4	4.5e-86
WP_000934764.1|1029167_1029638_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
WP_031833239.1|1029667_1030552_+	DnaD domain protein	NA	A0A1W6JPN9	Staphylococcus_phage	100.0	1.7e-139
WP_000338530.1|1030558_1030777_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401964.1|1030785_1031190_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000101270.1|1031202_1031571_+	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000131381.1|1031574_1031817_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_061385154.1|1031831_1032080_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	97.6	2.0e-37
WP_061385153.1|1032072_1032606_+	dUTP pyrophosphatase	NA	A0A059T5A7	Staphylococcus_phage	99.4	3.5e-95
WP_061385152.1|1032642_1032849_+	DUF1381 domain-containing protein	NA	A0A2I6PDB6	Staphylococcus_phage	95.6	1.9e-28
WP_061385151.1|1032845_1033232_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	98.4	2.0e-63
WP_000595265.1|1033228_1033378_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001005262.1|1033536_1034187_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000265041.1|1034186_1034387_+	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000590122.1|1034414_1034831_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|1035062_1035362_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|1035491_1035836_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625088.1|1035832_1037494_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1037509_1038697_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|1038680_1039418_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154555.1|1039441_1040587_+|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000238236.1|1040606_1040891_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|1040880_1041165_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|1041148_1041511_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114225.1|1041507_1041912_+	HK97 gp10 family phage protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|1041908_1042316_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268740.1|1042316_1042961_+|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_071621395.1|1043002_1043227_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096353.1|1043276_1043627_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	99.1	3.0e-58
WP_114638088.1|1043871_1048401_+|tail	phage tail tape measure protein	tail	A0A1X9H017	Staphylococcus_phage	92.0	0.0e+00
WP_031889406.1|1048397_1049882_+|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	98.8	1.2e-294
WP_098827734.1|1049897_1053683_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_001153681.1|1053672_1053825_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|1053871_1054159_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|1054216_1054513_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|1054662_1054839_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|1054891_1054999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|1055050_1055305_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|1055316_1056072_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|1056262_1056754_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000702262.1|1058207_1058558_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|1058610_1058871_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|1059181_1059361_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_000669725.1|1060318_1062388_+	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_001068535.1|1062658_1063945_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|1064144_1064243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681966.1|1064484_1064661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|1064918_1065299_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991294.1|1065295_1066192_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	6.5e-17
WP_000645735.1|1066192_1066873_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|1066869_1067742_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221650.1|1067741_1068482_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|1068545_1069109_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966291.1|1069229_1069754_+	membrane protein	NA	NA	NA	NA	NA
WP_001033968.1|1069813_1070371_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713062.1|1070367_1071210_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188070.1|1071266_1072307_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|1072757_1072931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000706213.1|1073477_1074590_+|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.6	1.7e-11
WP_000026850.1|1074592_1076656_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000410574.1|1076664_1077030_+|transposase	transposase	transposase	NA	NA	NA	NA
1085786:1085803	attR	ACAACTAAAATTTTAGAA	NA	NA	NA	NA
>prophage 2
NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2789928	1201646	1249500	2789928	protease,tRNA,transposase	Staphylococcus_phage(91.89%)	47	NA	NA
WP_000196442.1|1201646_1201928_+|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
WP_000070813.1|1202376_1202760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1202770_1202947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000864133.1|1203317_1203875_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000414230.1|1204072_1204645_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000627549.1|1204742_1205087_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000669036.1|1205127_1205754_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000070644.1|1205829_1206825_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_001825423.1|1206905_1207568_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_016187363.1|1207870_1208326_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_000348381.1|1208484_1209963_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_000778553.1|1209967_1210969_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000718107.1|1210965_1211223_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|1211288_1211762_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_016187361.1|1211766_1212513_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000109913.1|1212809_1214402_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_000933822.1|1214773_1215967_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366160.1|1216091_1217000_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000453302.1|1217211_1218045_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000623484.1|1218294_1218648_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_001200546.1|1218644_1219010_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000091443.1|1219264_1219567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|1219825_1220539_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000492903.1|1221101_1221722_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001168915.1|1221888_1222524_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001030474.1|1222821_1223265_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001153741.1|1223251_1223695_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671058.1|1223807_1224278_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_000384171.1|1224476_1224701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032832.1|1224976_1225831_+	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989103.1|1225917_1227210_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_000221190.1|1227209_1227524_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_001261672.1|1228174_1229677_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000077346.1|1230157_1231201_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_000493892.1|1231207_1231840_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159034.1|1231850_1233032_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_001008555.1|1233044_1233503_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001196354.1|1233630_1234632_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_014937042.1|1234743_1234863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|1234865_1235693_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|1236265_1236667_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764426.1|1236785_1237349_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000526541.1|1237345_1238299_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_001025064.1|1238408_1239590_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_001807819.1|1239877_1242295_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_000836471.1|1242316_1242628_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001050515.1|1242951_1249500_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
>prophage 3
NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2789928	1373235	1382278	2789928	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005766.1|1373235_1374240_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019177.1|1374241_1375267_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|1375289_1376429_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|1376447_1376708_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749801.1|1376982_1379262_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595008.1|1379464_1381738_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000364542.1|1381759_1382278_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 4
NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2789928	1451702	1460014	2789928	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217255.1|1451702_1453502_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
WP_001283055.1|1453725_1454832_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624563.1|1454962_1455640_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683941.1|1455642_1456743_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_001062170.1|1456856_1458203_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000924214.1|1458212_1459103_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|1459228_1460014_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 5
NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2789928	1733762	1738950	2789928		Staphylococcus_phage(66.67%)	8	NA	NA
WP_001215406.1|1733762_1733936_+	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
WP_000974166.1|1733999_1734584_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_000477490.1|1735015_1735432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1735942_1736128_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|1736520_1736631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002341.1|1737331_1737538_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_074347689.1|1737838_1738066_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001807853.1|1738752_1738950_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
>prophage 6
NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2789928	1995287	2003760	2789928		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238668.1|1995287_1995854_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
WP_000030815.1|1995856_1996885_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000483707.1|1996877_1998362_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000032750.1|1998340_2000530_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000666799.1|2000522_2001194_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848351.1|2001195_2001459_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174055.1|2001458_2002163_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_031794888.1|2002166_2003291_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001807816.1|2003277_2003760_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 7
NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2789928	2023543	2048011	2789928	protease,holin,bacteriocin	Planktothrix_phage(50.0%)	27	NA	NA
WP_001088778.1|2023543_2024725_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284455.1|2024762_2025092_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|2025329_2026151_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150215.1|2026143_2026947_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526673.1|2026933_2028607_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190616.1|2028593_2029955_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|2030136_2031075_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620945.1|2031125_2031677_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867362.1|2031841_2032057_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_001794249.1|2032120_2032252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081332.1|2032300_2033260_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|2033750_2034107_+	DoxX family protein	NA	NA	NA	NA	NA
WP_157958947.1|2034195_2034384_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001796515.1|2034473_2034764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571192.1|2034851_2035493_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_000668623.1|2035489_2035810_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870811.1|2035812_2037777_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000790905.1|2037820_2038105_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_099119695.1|2038739_2038817_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_001033867.1|2039116_2039719_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|2039733_2039910_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668814.1|2040108_2041095_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|2041175_2041394_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287260.1|2041603_2042173_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414168.1|2042661_2044173_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021872.1|2044311_2045670_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_014937014.1|2045686_2048011_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
>prophage 8
NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2789928	2102481	2125706	2789928	integrase	Streptococcus_phage(94.74%)	23	2098190:2098207	2137233:2137250
2098190:2098207	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
WP_000420682.1|2102481_2102796_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|2102811_2103198_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|2103226_2104612_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|2104614_2104767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398286.1|2104789_2105995_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	99.8	1.1e-232
WP_001009056.1|2106037_2106259_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|2106375_2106873_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|2106847_2107354_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331163.1|2107337_2109785_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.9	0.0e+00
WP_000804748.1|2109787_2111965_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|2111961_2112963_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224318.1|2112959_2113892_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_001814923.1|2114136_2114253_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691736.1|2114268_2116188_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_000336323.1|2116306_2116474_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|2116533_2116887_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|2117391_2117814_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|2117810_2118041_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|2118501_2118705_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|2118786_2120004_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000902814.1|2120268_2120658_-	YisL family protein	NA	NA	NA	NA	NA
WP_000670757.1|2120984_2121887_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000154905.1|2122052_2125706_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
2137233:2137250	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 9
NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2789928	2265357	2279673	2789928		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000616865.1|2265357_2266119_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
WP_001245567.1|2266115_2267072_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000876311.1|2267058_2268030_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_000562498.1|2268399_2269371_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|2269490_2271596_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|2271558_2271957_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068490.1|2272758_2273625_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930016.1|2273644_2274145_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_000193750.1|2274484_2275990_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_014936998.1|2276061_2276169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429003.1|2276259_2277177_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_000197271.1|2277913_2278456_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663034.1|2278614_2279673_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
>prophage 10
NZ_LT992466	Staphylococcus aureus isolate 4_LA_208 chromosome I	2789928	2291643	2299463	2789928		Pandoravirus(16.67%)	10	NA	NA
WP_001217786.1|2291643_2292795_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604516.1|2292778_2293372_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_000446724.1|2293722_2294391_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|2294392_2294812_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062967.1|2294815_2295529_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	5.0e-52
WP_000637685.1|2295627_2296212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093559.1|2296492_2296933_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037805.1|2297273_2297747_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|2297721_2298408_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|2298407_2299463_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
