assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	1	866372-866452	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	GGGAGTGGGAGAGAAATGATAAAGA	25	1	1	866397-866427	NZ_LT992465.1_921296-921266	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|105aa|up_7|NZ_LT992465.1_858450_858765_+,NA	NA|356aa|up_9|NZ_LT992465.1_855960_857028_-	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|347aa|up_8|NZ_LT992465.1_857041_858082_-	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|105aa|up_7|NZ_LT992465.1_858450_858765_+	NA	NA|466aa|up_6|NZ_LT992465.1_859096_860494_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|155aa|up_5|NZ_LT992465.1_860644_861109_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|417aa|up_4|NZ_LT992465.1_861098_862349_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_3|NZ_LT992465.1_862454_863762_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_2|NZ_LT992465.1_863860_864622_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_1|NZ_LT992465.1_864949_865801_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_0|NZ_LT992465.1_866034_866229_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|down_0|NZ_LT992465.1_867036_867858_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|down_1|NZ_LT992465.1_867875_868571_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|down_2|NZ_LT992465.1_868563_869589_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|down_3|NZ_LT992465.1_869838_870135_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|down_4|NZ_LT992465.1_870127_870514_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_5|NZ_LT992465.1_871215_872094_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_6|NZ_LT992465.1_872273_872654_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_7|NZ_LT992465.1_872811_873168_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_8|NZ_LT992465.1_873311_873632_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_9|NZ_LT992465.1_873781_874321_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	2	1077626-1077734	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|239aa|up_5|NZ_LT992465.1_1072507_1073224_-,NA|169aa|up_4|NZ_LT992465.1_1073385_1073892_-,NA	NA|75aa|up_9|NZ_LT992465.1_1068631_1068856_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_LT992465.1_1069048_1069978_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_LT992465.1_1070925_1071300_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_LT992465.1_1071551_1072340_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_LT992465.1_1072507_1073224_-	NA	NA|169aa|up_4|NZ_LT992465.1_1073385_1073892_-	NA	NA|267aa|up_3|NZ_LT992465.1_1074027_1074828_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_LT992465.1_1074811_1075531_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_LT992465.1_1075585_1076536_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_LT992465.1_1076686_1077574_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_LT992465.1_1077903_1078539_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_LT992465.1_1079023_1080685_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_LT992465.1_1080681_1081098_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_LT992465.1_1081373_1082384_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_LT992465.1_1082882_1083404_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_LT992465.1_1083431_1084727_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_LT992465.1_1084766_1085243_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_LT992465.1_1085412_1085949_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_LT992465.1_1086394_1087333_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_LT992465.1_1087602_1088229_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	3	1976183-1976316	1	PILER-CR	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA,NA|103aa|down_2|NZ_LT992465.1_1981450_1981759_-,NA|89aa|down_3|NZ_LT992465.1_1981902_1982169_-	NA|388aa|up_9|NZ_LT992465.1_1960496_1961660_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|204aa|up_8|NZ_LT992465.1_1961757_1962369_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_7|NZ_LT992465.1_1962915_1964193_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_6|NZ_LT992465.1_1965104_1966928_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_5|NZ_LT992465.1_1967066_1967483_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_4|NZ_LT992465.1_1967713_1968406_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_3|NZ_LT992465.1_1968570_1969335_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_2|NZ_LT992465.1_1969491_1970169_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_1|NZ_LT992465.1_1970193_1971747_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_0|NZ_LT992465.1_1971863_1973222_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|952aa|down_0|NZ_LT992465.1_1977423_1980279_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_LT992465.1_1980458_1981325_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_2|NZ_LT992465.1_1981450_1981759_-	NA	NA|89aa|down_3|NZ_LT992465.1_1981902_1982169_-	NA	NA|584aa|down_4|NZ_LT992465.1_1982452_1984204_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_5|NZ_LT992465.1_1984279_1985473_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_6|NZ_LT992465.1_1985568_1986498_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_7|NZ_LT992465.1_1986740_1987514_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_8|NZ_LT992465.1_1987625_1988390_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_9|NZ_LT992465.1_1988637_1989423_+	pfam04507, DUF576, Csa1 family
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	4	1979727-1979860	2	PILER-CR	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA,NA|103aa|down_1|NZ_LT992465.1_1981450_1981759_-,NA|89aa|down_2|NZ_LT992465.1_1981902_1982169_-	NA|204aa|up_9|NZ_LT992465.1_1961757_1962369_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_LT992465.1_1962915_1964193_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_LT992465.1_1965104_1966928_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_LT992465.1_1967066_1967483_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_LT992465.1_1967713_1968406_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_LT992465.1_1968570_1969335_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_3|NZ_LT992465.1_1969491_1970169_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_LT992465.1_1970193_1971747_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_LT992465.1_1971863_1973222_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1018aa|up_0|NZ_LT992465.1_1973690_1976744_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_LT992465.1_1980458_1981325_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992465.1_1981450_1981759_-	NA	NA|89aa|down_2|NZ_LT992465.1_1981902_1982169_-	NA	NA|584aa|down_3|NZ_LT992465.1_1982452_1984204_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992465.1_1984279_1985473_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992465.1_1985568_1986498_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992465.1_1986740_1987514_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992465.1_1987625_1988390_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992465.1_1988637_1989423_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992465.1_1989419_1990775_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	5	2004324-2004418	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	TTGCTTCGCAACAACTGCATAAGAGCCT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|105aa|up_8|NZ_LT992465.1_1996165_1996480_-,NA|121aa|up_0|NZ_LT992465.1_2003292_2003655_+,NA|249aa|down_9|NZ_LT992465.1_2014085_2014832_-	NA|140aa|up_9|NZ_LT992465.1_1993869_1994289_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|105aa|up_8|NZ_LT992465.1_1996165_1996480_-	NA	NA|403aa|up_7|NZ_LT992465.1_1996485_1997694_-	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|128aa|up_6|NZ_LT992465.1_1997760_1998144_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|up_5|NZ_LT992465.1_1998598_1999009_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|133aa|up_4|NZ_LT992465.1_1999035_1999434_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|141aa|up_3|NZ_LT992465.1_1999905_2000328_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|513aa|up_2|NZ_LT992465.1_2000439_2001978_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|273aa|up_1|NZ_LT992465.1_2002211_2003030_+	PRK08589, PRK08589, SDR family oxidoreductase	NA|121aa|up_0|NZ_LT992465.1_2003292_2003655_+	NA	NA|274aa|down_0|NZ_LT992465.1_2004603_2005425_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|273aa|down_1|NZ_LT992465.1_2005435_2006254_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|434aa|down_2|NZ_LT992465.1_2006246_2007548_+	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|533aa|down_3|NZ_LT992465.1_2007690_2009289_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|312aa|down_4|NZ_LT992465.1_2009301_2010237_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_5|NZ_LT992465.1_2010233_2011103_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_6|NZ_LT992465.1_2011099_2011915_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|down_7|NZ_LT992465.1_2011907_2012657_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|398aa|down_8|NZ_LT992465.1_2012668_2013862_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|249aa|down_9|NZ_LT992465.1_2014085_2014832_-	NA
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	6	2048671-2048749	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|220aa|up_3|NZ_LT992465.1_2045595_2046255_-,NA|36aa|up_0|NZ_LT992465.1_2048243_2048351_+,NA|56aa|down_2|NZ_LT992465.1_2052806_2052974_+	NA|693aa|up_9|NZ_LT992465.1_2038051_2040130_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_LT992465.1_2040267_2041677_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_LT992465.1_2041962_2042769_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_LT992465.1_2042831_2043488_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_LT992465.1_2043600_2044074_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_LT992465.1_2044196_2045408_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_LT992465.1_2045595_2046255_-	NA	NA|381aa|up_2|NZ_LT992465.1_2046314_2047457_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_LT992465.1_2047723_2048110_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_LT992465.1_2048243_2048351_+	NA	NA|588aa|down_0|NZ_LT992465.1_2049054_2050818_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_LT992465.1_2050842_2052576_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_LT992465.1_2052806_2052974_+	NA	NA|229aa|down_3|NZ_LT992465.1_2053028_2053715_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_LT992465.1_2053692_2055051_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_LT992465.1_2055052_2056060_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_LT992465.1_2056037_2057153_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_LT992465.1_2057163_2057856_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_LT992465.1_2057866_2058334_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_LT992465.1_2058385_2059363_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	7	2064048-2064142	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	GCCTTTCTAACAAATAAATTTGAAGAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|40aa|up_0|NZ_LT992465.1_2063749_2063869_+,NA|35aa|down_2|NZ_LT992465.1_2066316_2066421_-	NA|453aa|up_9|NZ_LT992465.1_2053692_2055051_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_LT992465.1_2055052_2056060_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_LT992465.1_2056037_2057153_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_LT992465.1_2057163_2057856_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_LT992465.1_2057866_2058334_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_LT992465.1_2058385_2059363_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_LT992465.1_2059364_2060312_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_LT992465.1_2060879_2061809_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|437aa|up_1|NZ_LT992465.1_2062344_2063655_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|40aa|up_0|NZ_LT992465.1_2063749_2063869_+	NA	NA|289aa|down_0|NZ_LT992465.1_2064283_2065150_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_LT992465.1_2065476_2066163_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_LT992465.1_2066316_2066421_-	NA	NA|480aa|down_3|NZ_LT992465.1_2066594_2068034_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_LT992465.1_2068154_2068934_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_LT992465.1_2068914_2069634_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_LT992465.1_2069630_2070362_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_LT992465.1_2070458_2071709_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_LT992465.1_2071963_2072326_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_LT992465.1_2072344_2072944_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	8	2180474-2180559	6	CRISPRCasFinder	no	WYL	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	6	2180504-2180529|2180504-2180529|2180504-2180529|2180504-2180529|2180504-2180529|2180504-2180529	NZ_LT992465.1_115228-115203|NZ_LT992465.1_870795-870770|NZ_LT992465.1_383680-383705|NZ_LT992465.1_821690-821715|NZ_LT992465.1_866625-866650|NZ_LT992465.1_2389078-2389103	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|110aa|up_8|NZ_LT992465.1_2170871_2171201_-,NA|78aa|up_1|NZ_LT992465.1_2179289_2179523_+,NA|65aa|down_6|NZ_LT992465.1_2187619_2187814_+	NA|291aa|up_9|NZ_LT992465.1_2169554_2170427_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|110aa|up_8|NZ_LT992465.1_2170871_2171201_-	NA	NA|246aa|up_7|NZ_LT992465.1_2171249_2171987_+	pfam02517, Abi, CAAX protease self-immunity	WYL|231aa|up_6|NZ_LT992465.1_2172011_2172704_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|266aa|up_5|NZ_LT992465.1_2173088_2173886_+	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|316aa|up_4|NZ_LT992465.1_2174018_2174966_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|985aa|up_3|NZ_LT992465.1_2175567_2178522_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|158aa|up_2|NZ_LT992465.1_2178521_2178995_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|78aa|up_1|NZ_LT992465.1_2179289_2179523_+	NA	NA|259aa|up_0|NZ_LT992465.1_2179544_2180321_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|375aa|down_0|NZ_LT992465.1_2180929_2182054_+	PRK06753, PRK06753, hypothetical protein; Provisional	NA|318aa|down_1|NZ_LT992465.1_2182145_2183099_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|167aa|down_2|NZ_LT992465.1_2183461_2183962_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|141aa|down_3|NZ_LT992465.1_2184198_2184621_-	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|361aa|down_4|NZ_LT992465.1_2184868_2185951_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|467aa|down_5|NZ_LT992465.1_2186045_2187446_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|65aa|down_6|NZ_LT992465.1_2187619_2187814_+	NA	NA|270aa|down_7|NZ_LT992465.1_2187882_2188692_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|652aa|down_8|NZ_LT992465.1_2189301_2191257_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|248aa|down_9|NZ_LT992465.1_2191282_2192026_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	9	2344434-2344584	7	CRISPRCasFinder	no	TnsE_C,csa3	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Type I-A	TGCATAAGAGCCCCTTACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|31aa|up_2|NZ_LT992465.1_2342633_2342726_-,NA|53aa|up_1|NZ_LT992465.1_2343161_2343320_-,NA|35aa|up_0|NZ_LT992465.1_2343999_2344104_+,NA|364aa|down_0|NZ_LT992465.1_2344601_2345693_-,NA|77aa|down_5|NZ_LT992465.1_2349480_2349711_+	TnsE_C|135aa|up_9|NZ_LT992465.1_2336394_2336799_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|97aa|up_8|NZ_LT992465.1_2336923_2337214_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|490aa|up_7|NZ_LT992465.1_2337273_2338743_+	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|345aa|up_6|NZ_LT992465.1_2338836_2339871_+	pfam13676, TIR_2, TIR domain	NA|203aa|up_5|NZ_LT992465.1_2339898_2340507_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|261aa|up_4|NZ_LT992465.1_2340796_2341579_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_LT992465.1_2341646_2342504_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_LT992465.1_2342633_2342726_-	NA	NA|53aa|up_1|NZ_LT992465.1_2343161_2343320_-	NA	NA|35aa|up_0|NZ_LT992465.1_2343999_2344104_+	NA	NA|364aa|down_0|NZ_LT992465.1_2344601_2345693_-	NA	NA|327aa|down_1|NZ_LT992465.1_2345958_2346939_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_LT992465.1_2346940_2347261_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_LT992465.1_2347412_2348078_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_LT992465.1_2348511_2349450_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_LT992465.1_2349480_2349711_+	NA	NA|458aa|down_6|NZ_LT992465.1_2350382_2351756_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_LT992465.1_2352213_2352627_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_LT992465.1_2352826_2353270_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_LT992465.1_2353390_2354101_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	10	2400003-2400215	8	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	47	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA|107aa|up_0|NZ_LT992465.1_2399648_2399969_-,NA|46aa|down_4|NZ_LT992465.1_2403215_2403353_+	NA|147aa|up_9|NZ_LT992465.1_2391121_2391562_+	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|147aa|up_8|NZ_LT992465.1_2391618_2392059_-	pfam14183, YwpF, YwpF-like protein	NA|132aa|up_7|NZ_LT992465.1_2392252_2392648_+	pfam00436, SSB, Single-strand binding protein family	NA|232aa|up_6|NZ_LT992465.1_2393036_2393732_+	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|230aa|up_5|NZ_LT992465.1_2394118_2394808_+	TIGR04306, salvage_TenA, thiaminase II	NA|277aa|up_4|NZ_LT992465.1_2394800_2395631_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|264aa|up_3|NZ_LT992465.1_2395614_2396406_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|214aa|up_2|NZ_LT992465.1_2396407_2397049_+	PRK00043, thiE, thiamine phosphate synthase	NA|291aa|up_1|NZ_LT992465.1_2397134_2398007_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|107aa|up_0|NZ_LT992465.1_2399648_2399969_-	NA	NA|216aa|down_0|NZ_LT992465.1_2400248_2400896_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|495aa|down_1|NZ_LT992465.1_2400923_2402408_-	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|98aa|down_2|NZ_LT992465.1_2402573_2402867_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|70aa|down_3|NZ_LT992465.1_2402878_2403088_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|46aa|down_4|NZ_LT992465.1_2403215_2403353_+	NA	NA|401aa|down_5|NZ_LT992465.1_2403616_2404819_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|357aa|down_6|NZ_LT992465.1_2405136_2406207_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|452aa|down_7|NZ_LT992465.1_2406221_2407577_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|507aa|down_8|NZ_LT992465.1_2408092_2409613_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|232aa|down_9|NZ_LT992465.1_2409965_2410661_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_900324275.1_6_LA_232	NZ_LT992465	Staphylococcus aureus isolate 6_LA_232 chromosome I	11	2772591-2772673	9	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,TnsE_C	Orphan	GTAAGCTGACTTTTTCGTCAGCTTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,TnsE_C	NA,NA	NA|383aa|up_9|NZ_LT992465.1_2762114_2763263_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|408aa|up_8|NZ_LT992465.1_2763262_2764486_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|257aa|up_7|NZ_LT992465.1_2764529_2765300_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|165aa|up_6|NZ_LT992465.1_2765397_2765892_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_5|NZ_LT992465.1_2766014_2766962_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_4|NZ_LT992465.1_2767049_2768252_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_3|NZ_LT992465.1_2768498_2768999_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_2|NZ_LT992465.1_2769139_2770258_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|352aa|up_1|NZ_LT992465.1_2770573_2771629_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_0|NZ_LT992465.1_2771803_2772493_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|down_0|NZ_LT992465.1_2772998_2773412_-	pfam00582, Usp, Universal stress protein family	NA|433aa|down_1|NZ_LT992465.1_2773616_2774915_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_2|NZ_LT992465.1_2775284_2776226_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_3|NZ_LT992465.1_2776246_2779444_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_4|NZ_LT992465.1_2779892_2781122_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_5|NZ_LT992465.1_2781316_2782174_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_6|NZ_LT992465.1_2782173_2783118_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_7|NZ_LT992465.1_2783386_2784355_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_8|NZ_LT992465.1_2784376_2786134_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_9|NZ_LT992465.1_2786477_2787839_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
