assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900324265.1_9_LA_281	NZ_LT992460	Staphylococcus aureus isolate 9_LA_281 chromosome I	1	259219-259327	1	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|239aa|up_5|NZ_LT992460.1_254100_254817_-,NA|169aa|up_4|NZ_LT992460.1_254978_255485_-,NA	NA|75aa|up_9|NZ_LT992460.1_250223_250448_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_LT992460.1_250640_251570_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_LT992460.1_252517_252892_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_LT992460.1_253143_253932_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_LT992460.1_254100_254817_-	NA	NA|169aa|up_4|NZ_LT992460.1_254978_255485_-	NA	NA|267aa|up_3|NZ_LT992460.1_255620_256421_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_LT992460.1_256404_257124_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_LT992460.1_257178_258129_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_LT992460.1_258279_259167_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_LT992460.1_259496_260132_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_LT992460.1_260616_262278_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_LT992460.1_262274_262691_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_LT992460.1_262966_263977_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_LT992460.1_264475_264997_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_LT992460.1_265024_266320_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_LT992460.1_266359_266836_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_LT992460.1_267005_267542_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_LT992460.1_267987_268926_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_LT992460.1_269195_269822_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_900324265.1_9_LA_281	NZ_LT992460	Staphylococcus aureus isolate 9_LA_281 chromosome I	2	1202017-1202150	1	PILER-CR	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA,NA|103aa|down_1|NZ_LT992460.1_1207284_1207593_-,NA|89aa|down_2|NZ_LT992460.1_1207736_1208003_-	NA|388aa|up_9|NZ_LT992460.1_1186349_1187513_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|204aa|up_8|NZ_LT992460.1_1187610_1188222_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_7|NZ_LT992460.1_1188768_1190046_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_6|NZ_LT992460.1_1190957_1192781_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_5|NZ_LT992460.1_1192919_1193336_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_4|NZ_LT992460.1_1193566_1194259_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|263aa|up_3|NZ_LT992460.1_1194398_1195187_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|220aa|up_2|NZ_LT992460.1_1195343_1196003_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_1|NZ_LT992460.1_1196027_1197581_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_0|NZ_LT992460.1_1197697_1199056_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|289aa|down_0|NZ_LT992460.1_1206292_1207159_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992460.1_1207284_1207593_-	NA	NA|89aa|down_2|NZ_LT992460.1_1207736_1208003_-	NA	NA|584aa|down_3|NZ_LT992460.1_1208286_1210038_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992460.1_1210113_1211307_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992460.1_1211402_1212332_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992460.1_1212574_1213348_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992460.1_1213459_1214224_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992460.1_1214471_1215257_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992460.1_1215253_1216609_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324265.1_9_LA_281	NZ_LT992460	Staphylococcus aureus isolate 9_LA_281 chromosome I	3	1205561-1205694	2	PILER-CR	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA,NA|103aa|down_1|NZ_LT992460.1_1207284_1207593_-,NA|89aa|down_2|NZ_LT992460.1_1207736_1208003_-	NA|204aa|up_9|NZ_LT992460.1_1187610_1188222_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_LT992460.1_1188768_1190046_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_LT992460.1_1190957_1192781_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_LT992460.1_1192919_1193336_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_LT992460.1_1193566_1194259_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|263aa|up_4|NZ_LT992460.1_1194398_1195187_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|220aa|up_3|NZ_LT992460.1_1195343_1196003_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_LT992460.1_1196027_1197581_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_LT992460.1_1197697_1199056_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1018aa|up_0|NZ_LT992460.1_1199524_1202578_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_LT992460.1_1206292_1207159_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992460.1_1207284_1207593_-	NA	NA|89aa|down_2|NZ_LT992460.1_1207736_1208003_-	NA	NA|584aa|down_3|NZ_LT992460.1_1208286_1210038_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992460.1_1210113_1211307_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992460.1_1211402_1212332_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992460.1_1212574_1213348_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992460.1_1213459_1214224_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992460.1_1214471_1215257_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992460.1_1215253_1216609_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324265.1_9_LA_281	NZ_LT992460	Staphylococcus aureus isolate 9_LA_281 chromosome I	4	1230158-1230252	2	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	TTGCTTCGCAACAACTGCATAAGAGCCT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|105aa|up_8|NZ_LT992460.1_1221999_1222314_-,NA|121aa|up_0|NZ_LT992460.1_1229126_1229489_+,NA|249aa|down_9|NZ_LT992460.1_1239919_1240666_-	NA|140aa|up_9|NZ_LT992460.1_1219703_1220123_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|105aa|up_8|NZ_LT992460.1_1221999_1222314_-	NA	NA|403aa|up_7|NZ_LT992460.1_1222319_1223528_-	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|128aa|up_6|NZ_LT992460.1_1223594_1223978_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|up_5|NZ_LT992460.1_1224432_1224843_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|133aa|up_4|NZ_LT992460.1_1224869_1225268_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|141aa|up_3|NZ_LT992460.1_1225739_1226162_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|513aa|up_2|NZ_LT992460.1_1226273_1227812_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|273aa|up_1|NZ_LT992460.1_1228045_1228864_+	PRK08589, PRK08589, SDR family oxidoreductase	NA|121aa|up_0|NZ_LT992460.1_1229126_1229489_+	NA	NA|274aa|down_0|NZ_LT992460.1_1230437_1231259_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|273aa|down_1|NZ_LT992460.1_1231269_1232088_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|434aa|down_2|NZ_LT992460.1_1232080_1233382_+	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|533aa|down_3|NZ_LT992460.1_1233524_1235123_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|312aa|down_4|NZ_LT992460.1_1235135_1236071_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_5|NZ_LT992460.1_1236067_1236937_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_6|NZ_LT992460.1_1236933_1237749_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|down_7|NZ_LT992460.1_1237741_1238491_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|398aa|down_8|NZ_LT992460.1_1238502_1239696_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|249aa|down_9|NZ_LT992460.1_1239919_1240666_-	NA
GCF_900324265.1_9_LA_281	NZ_LT992460	Staphylococcus aureus isolate 9_LA_281 chromosome I	5	1274505-1274583	3	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	1	1274528-1274560	NZ_LT992460.1_658502-658470	NA	1	1	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|220aa|up_3|NZ_LT992460.1_1271429_1272089_-,NA|36aa|up_0|NZ_LT992460.1_1274077_1274185_+,NA|56aa|down_2|NZ_LT992460.1_1278640_1278808_+	NA|693aa|up_9|NZ_LT992460.1_1263885_1265964_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_LT992460.1_1266101_1267511_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_LT992460.1_1267796_1268603_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_LT992460.1_1268665_1269322_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_LT992460.1_1269434_1269908_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_LT992460.1_1270030_1271242_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_LT992460.1_1271429_1272089_-	NA	NA|381aa|up_2|NZ_LT992460.1_1272148_1273291_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_LT992460.1_1273557_1273944_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_LT992460.1_1274077_1274185_+	NA	NA|588aa|down_0|NZ_LT992460.1_1274888_1276652_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_LT992460.1_1276676_1278410_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_LT992460.1_1278640_1278808_+	NA	NA|229aa|down_3|NZ_LT992460.1_1278862_1279549_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_LT992460.1_1279526_1280885_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_LT992460.1_1280886_1281894_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_LT992460.1_1281871_1282987_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_LT992460.1_1282997_1283690_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_LT992460.1_1283700_1284168_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_LT992460.1_1284219_1285197_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_900324265.1_9_LA_281	NZ_LT992460	Staphylococcus aureus isolate 9_LA_281 chromosome I	6	1570243-1570393	4	CRISPRCasFinder	no	TnsE_C,csa3	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Type I-A	TGCATAAGAGCCCCTTACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|107aa|up_9|NZ_LT992460.1_1561704_1562025_+,NA|31aa|up_2|NZ_LT992460.1_1568442_1568535_-,NA|53aa|up_1|NZ_LT992460.1_1568970_1569129_-,NA|35aa|up_0|NZ_LT992460.1_1569808_1569913_+,NA|364aa|down_0|NZ_LT992460.1_1570410_1571502_-,NA|77aa|down_5|NZ_LT992460.1_1575289_1575520_+	NA|107aa|up_9|NZ_LT992460.1_1561704_1562025_+	NA	TnsE_C|135aa|up_8|NZ_LT992460.1_1562202_1562607_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|97aa|up_7|NZ_LT992460.1_1562731_1563022_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|490aa|up_6|NZ_LT992460.1_1563081_1564551_+	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|203aa|up_5|NZ_LT992460.1_1565707_1566316_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|261aa|up_4|NZ_LT992460.1_1566605_1567388_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_LT992460.1_1567455_1568313_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_LT992460.1_1568442_1568535_-	NA	NA|53aa|up_1|NZ_LT992460.1_1568970_1569129_-	NA	NA|35aa|up_0|NZ_LT992460.1_1569808_1569913_+	NA	NA|364aa|down_0|NZ_LT992460.1_1570410_1571502_-	NA	NA|327aa|down_1|NZ_LT992460.1_1571767_1572748_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_LT992460.1_1572749_1573070_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_LT992460.1_1573221_1573887_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_LT992460.1_1574320_1575259_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_LT992460.1_1575289_1575520_+	NA	NA|458aa|down_6|NZ_LT992460.1_1576191_1577565_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_LT992460.1_1578022_1578436_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_LT992460.1_1578635_1579079_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_LT992460.1_1579199_1579910_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_900324265.1_9_LA_281	NZ_LT992460	Staphylococcus aureus isolate 9_LA_281 chromosome I	7	1997114-1997196	5	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	GTAAGCTGACTTTTTCGTCAGCTTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA,NA	NA|383aa|up_9|NZ_LT992460.1_1986637_1987786_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|408aa|up_8|NZ_LT992460.1_1987785_1989009_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|257aa|up_7|NZ_LT992460.1_1989052_1989823_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|165aa|up_6|NZ_LT992460.1_1989920_1990415_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_5|NZ_LT992460.1_1990537_1991485_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_4|NZ_LT992460.1_1991572_1992775_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_3|NZ_LT992460.1_1993021_1993522_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_2|NZ_LT992460.1_1993662_1994781_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|352aa|up_1|NZ_LT992460.1_1995096_1996152_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_0|NZ_LT992460.1_1996326_1997016_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|down_0|NZ_LT992460.1_1997521_1997935_-	pfam00582, Usp, Universal stress protein family	NA|433aa|down_1|NZ_LT992460.1_1998139_1999438_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_2|NZ_LT992460.1_1999807_2000749_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_3|NZ_LT992460.1_2000769_2003967_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_4|NZ_LT992460.1_2004415_2005645_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_5|NZ_LT992460.1_2005839_2006697_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_6|NZ_LT992460.1_2006696_2007641_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_7|NZ_LT992460.1_2007909_2008878_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_8|NZ_LT992460.1_2008899_2010657_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_9|NZ_LT992460.1_2011000_2012362_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
GCF_900324265.1_9_LA_281	NZ_LT992460	Staphylococcus aureus isolate 9_LA_281 chromosome I	8	2881462-2881542	6	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	GGGAGTGGGAGAGAAATGATAAAGA	25	1	1	2881487-2881517	NZ_LT992460.1_45637-45607	NA	1	1	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|105aa|up_7|NZ_LT992460.1_2873540_2873855_+,NA	NA|356aa|up_9|NZ_LT992460.1_2871050_2872118_-	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|347aa|up_8|NZ_LT992460.1_2872131_2873172_-	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|105aa|up_7|NZ_LT992460.1_2873540_2873855_+	NA	NA|466aa|up_6|NZ_LT992460.1_2874186_2875584_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|155aa|up_5|NZ_LT992460.1_2875734_2876199_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|417aa|up_4|NZ_LT992460.1_2876188_2877439_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_3|NZ_LT992460.1_2877544_2878852_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_2|NZ_LT992460.1_2878950_2879712_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_1|NZ_LT992460.1_2880039_2880891_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_0|NZ_LT992460.1_2881124_2881319_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|down_0|NZ_LT992460.1_2882126_2882948_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|down_1|NZ_LT992460.1_2882965_2883661_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|down_2|NZ_LT992460.1_2883653_2884679_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|down_3|NZ_LT992460.1_2884928_2885225_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|down_4|NZ_LT992460.1_2885217_2885604_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_5|NZ_LT992460.1_2886305_2887184_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_6|NZ_LT992460.1_2887363_2887744_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_7|NZ_LT992460.1_2887901_2888258_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_8|NZ_LT992460.1_2888401_2888722_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_9|NZ_LT992460.1_2888871_2889411_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA
