The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	552921	598014	2857311	terminase,protease,integrase,holin,portal,tail,head,plate,capsid	Staphylococcus_phage(93.85%)	66	552811:552828	598748:598765
552811:552828	attL	ATCTTACAAGGGTGGGAT	NA	NA	NA	NA
WP_000264185.1|552921_554127_-|integrase	site-specific integrase	integrase	A7YGM7	Staphylococcus_virus	99.8	2.9e-222
WP_000191461.1|554236_554851_+	hypothetical protein	NA	A7TW88	Staphylococcus_phage	99.0	9.7e-105
WP_001013104.1|554847_554994_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000825948.1|555223_555808_-	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
WP_000521395.1|555825_556284_-	hypothetical protein	NA	B2ZYU2	Staphylococcus_phage	100.0	1.2e-83
WP_000455972.1|556305_556632_-	helix-turn-helix transcriptional regulator	NA	A0A059T5A2	Staphylococcus_phage	100.0	7.0e-54
WP_001114715.1|556794_557004_+	helix-turn-helix transcriptional regulator	NA	A0A059T617	Staphylococcus_phage	100.0	4.8e-32
WP_031886646.1|557042_557819_+	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	89.9	2.4e-124
WP_000939498.1|557847_557991_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|557980_558190_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_001025401.1|558245_558491_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|558459_558825_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001036302.1|558879_559095_+	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
WP_001124190.1|559119_559383_+	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
WP_001285948.1|559395_559557_+	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_000174994.1|559635_559959_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_000985976.1|559973_560336_+	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_000762545.1|560332_561499_+	DUF2800 domain-containing protein	NA	A7TWG4	Staphylococcus_phage	99.7	7.0e-221
WP_031915349.1|561524_562082_+	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	96.8	1.4e-94
WP_078100362.1|562150_564103_+	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	98.8	0.0e+00
WP_000152769.1|564114_564270_+	hypothetical protein	NA	A0A2I6PDP0	Staphylococcus_phage	94.1	3.5e-19
WP_001187243.1|564269_564455_+	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000101252.1|564455_564761_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_000029381.1|564888_565248_+	hypothetical protein	NA	A0A0E3T8L4	Staphylococcus_phage	95.8	2.7e-59
WP_031915351.1|565248_565497_+	phage protein	NA	A0A2I6PDI0	Staphylococcus_phage	87.8	2.5e-35
WP_000693989.1|565510_565717_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_000695771.1|565719_566127_+	hypothetical protein	NA	M9NST1	Staphylococcus_phage	98.5	2.6e-74
WP_000983950.1|566123_566318_+	hypothetical protein	NA	A0A0U2A067	Staphylococcus_phage	96.8	1.4e-25
WP_000982714.1|566314_566752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105602.1|566748_567114_+	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	97.3	7.4e-52
WP_001065080.1|567106_567355_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
WP_031915352.1|567347_567860_+	dUTP pyrophosphatase	NA	Q4ZDG4	Staphylococcus_virus	98.2	8.1e-89
WP_000195803.1|567896_568103_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_031915353.1|568099_568483_+	phage protein	NA	M9QX07	Staphylococcus_phage	98.4	4.8e-62
WP_031915354.1|568482_568635_+	transcriptional regulator	NA	A7TWI2	Staphylococcus_phage	96.0	3.4e-19
WP_000265251.1|568702_568903_+	DUF1514 family protein	NA	Q9B0E8	Staphylococcus_virus	100.0	3.8e-26
WP_031915355.1|568954_571402_+	virulence-associated E family protein	NA	M9QQL2	Staphylococcus_phage	99.1	0.0e+00
WP_001801650.1|571510_571609_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_031790894.1|571742_572033_+	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	99.0	1.4e-50
WP_078066486.1|572013_573381_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	1.1e-262
WP_031867792.1|573393_573831_+	transcriptional regulator	NA	A7TWI7	Staphylococcus_phage	97.9	3.3e-75
WP_031915356.1|573987_574302_+	HNH endonuclease	NA	A0A2D1G549	Staphylococcus_phage	99.0	4.2e-56
WP_000778933.1|574429_574735_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_031796929.1|574724_576416_+|terminase	terminase large subunit	terminase	M9QX14	Staphylococcus_phage	99.5	0.0e+00
WP_031796928.1|576420_577659_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	99.8	1.5e-234
WP_021285854.1|577642_578416_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	99.6	9.2e-137
WP_001142738.1|578427_579591_+|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	100.0	4.2e-218
WP_000050973.1|579659_579938_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_016187452.1|579949_580282_+	hypothetical protein	NA	M9QX19	Staphylococcus_phage	100.0	1.1e-57
WP_000110017.1|580278_580680_+	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	100.0	1.1e-67
WP_001023808.1|580680_581076_+	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	100.0	5.1e-67
WP_031795557.1|581110_581752_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	99.1	6.5e-120
WP_000169128.1|581843_582299_+	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_031775785.1|582356_582707_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	99.1	2.0e-54
WP_000438833.1|582748_582907_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_031882235.1|582920_589121_+|tail	phage tail tape measure protein	tail	U5U762	Staphylococcus_phage	97.6	0.0e+00
WP_001190533.1|589120_589945_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|589953_591537_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|591536_591827_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|591842_593753_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_031584731.1|593752_595219_+|plate	phage baseplate upper protein	plate	A0A2I6PE72	Staphylococcus_phage	99.8	3.4e-273
WP_031910402.1|595218_595608_+	DUF2977 domain-containing protein	NA	Q4ZCZ7	Staphylococcus_virus	94.6	1.6e-60
WP_000916022.1|595600_595765_+	XkdX family protein	NA	M9QX31	Staphylococcus_phage	98.1	1.9e-23
WP_000466775.1|595810_596110_+	DUF2951 family protein	NA	M9QRV2	Staphylococcus_phage	98.0	5.9e-31
WP_000339146.1|596245_596548_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_021285991.1|596559_598014_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	99.6	7.5e-289
598748:598765	attR	ATCTTACAAGGGTGGGAT	NA	NA	NA	NA
>prophage 2
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	991646	999466	2857311		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|991646_992702_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|992701_993388_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_031795501.1|993362_993836_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|994176_994617_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637685.1|994897_995482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|995580_996294_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|996297_996717_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|996718_997387_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604516.1|997737_998331_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_001217786.1|998314_999466_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 3
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	1011436	1025752	2857311		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663034.1|1011436_1012495_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
WP_000197271.1|1012653_1013196_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429003.1|1013932_1014850_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_014936998.1|1014940_1015048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|1015119_1016625_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|1016964_1017465_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068490.1|1017484_1018351_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|1019152_1019551_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|1019513_1021619_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|1021738_1022710_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|1023079_1024051_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245567.1|1024037_1024994_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000616865.1|1024990_1025752_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 4
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	1171106	1188629	2857311	integrase	Streptococcus_phage(100.0%)	20	1164985:1165000	1173317:1173332
1164985:1165000	attL	TTAATTAAAAAGTTTA	NA	NA	NA	NA
WP_001291561.1|1171106_1172324_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|1172405_1172609_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|1173069_1173300_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|1173296_1173719_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
1173317:1173332	attR	TAAACTTTTTAATTAA	NA	NA	NA	NA
WP_001227347.1|1174223_1174577_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|1174636_1174804_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691736.1|1174922_1176842_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_001814923.1|1176857_1176974_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224318.1|1177218_1178151_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_000769868.1|1178147_1179149_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|1179145_1181323_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000331160.1|1181325_1183773_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000506270.1|1183756_1184263_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|1184237_1184735_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|1184851_1185073_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|1185115_1186321_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000879507.1|1186343_1186496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|1186498_1187884_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|1187912_1188299_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|1188314_1188629_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
>prophage 5
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	1215553	1267566	2857311	holin,tRNA,bacteriocin,protease	Streptococcus_phage(40.0%)	52	NA	NA
WP_000448934.1|1215553_1216543_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1216837_1217233_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217731.1|1217603_1218323_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959279.1|1218443_1219430_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082727.1|1219477_1221286_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
WP_000896697.1|1221745_1222552_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|1222574_1222940_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224612.1|1223043_1223637_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242104.1|1223822_1224170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1224186_1224822_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1224838_1225648_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669942.1|1225644_1226499_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1226519_1227905_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1227914_1229759_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933200.1|1230036_1230807_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1231003_1232089_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570705.1|1232430_1233999_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889181.1|1234140_1234899_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1235092_1235602_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154224.1|1235714_1236905_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1236882_1238058_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340124.1|1238488_1239973_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_072434963.1|1239953_1240214_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049947.1|1240213_1241776_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
WP_000928413.1|1242077_1242881_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_014937014.1|1243099_1245424_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|1245440_1246799_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_031795489.1|1246937_1248449_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1248937_1249507_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1249716_1249935_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668814.1|1250015_1251002_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1251200_1251377_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1251391_1251994_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|1252293_1252371_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_000790905.1|1253005_1253290_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870811.1|1253333_1255298_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1255300_1255621_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571192.1|1255617_1256259_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_001796515.1|1256346_1256637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157958947.1|1256726_1256915_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1257003_1257360_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081332.1|1257849_1258809_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001794249.1|1258857_1258989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867362.1|1259052_1259268_-	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_000620945.1|1259432_1259984_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1260034_1260973_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190615.1|1261154_1262516_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526673.1|1262502_1264176_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150215.1|1264162_1264966_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1264958_1265780_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284455.1|1266017_1266347_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088778.1|1266384_1267566_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 6
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	1287349	1295822	2857311		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807816.1|1287349_1287832_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010409.1|1287818_1288943_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174055.1|1288946_1289651_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_000848351.1|1289650_1289914_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1289915_1290587_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032750.1|1290579_1292769_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000483707.1|1292747_1294232_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000030815.1|1294224_1295253_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|1295255_1295822_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 7
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	1552169	1557357	2857311		Staphylococcus_phage(66.67%)	8	NA	NA
WP_001807853.1|1552169_1552367_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_074347689.1|1553053_1553281_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001002341.1|1553581_1553788_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_001788716.1|1554488_1554599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1554991_1555177_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477489.1|1555687_1556104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974166.1|1556535_1557120_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_001215406.1|1557183_1557357_-	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
>prophage 8
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	1831072	1839384	2857311	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1831072_1831858_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1831983_1832874_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062170.1|1832883_1834230_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000683941.1|1834343_1835444_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|1835446_1836124_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1836254_1837361_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|1837584_1839384_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	1908808	1917851	2857311	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1908808_1909327_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595008.1|1909348_1911622_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000749801.1|1911824_1914104_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1914378_1914639_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1914657_1915797_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019177.1|1915819_1916845_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005766.1|1916846_1917851_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	2052810	2100656	2857311	tRNA,transposase,protease	Staphylococcus_phage(91.89%)	47	NA	NA
WP_001050515.1|2052810_2059359_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
WP_000836471.1|2059682_2059994_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001807819.1|2060015_2062433_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025064.1|2062720_2063902_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|2064011_2064965_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|2064961_2065525_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|2065643_2066045_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|2066617_2067445_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|2067447_2067567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|2067678_2068680_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|2068807_2069266_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|2069278_2070460_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_000493892.1|2070470_2071103_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077346.1|2071109_2072153_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261672.1|2072633_2074136_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|2074778_2075093_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|2075092_2076385_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|2076471_2077326_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|2077601_2077826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|2078024_2078495_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_001153741.1|2078607_2079051_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030474.1|2079037_2079481_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001168915.1|2079778_2080414_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492903.1|2080580_2081201_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|2081763_2082477_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|2082735_2083038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|2083292_2083658_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|2083654_2084008_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|2084257_2085091_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|2085302_2086211_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|2086335_2087529_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|2087900_2089493_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|2089789_2090536_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|2090540_2091014_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|2091079_2091337_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778553.1|2091333_2092335_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|2092339_2093818_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|2093976_2094432_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|2094734_2095397_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|2095477_2096473_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|2096548_2097175_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|2097215_2097560_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|2097657_2098230_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|2098427_2098985_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|2099355_2099532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|2099542_2099926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|2100374_2100656_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
>prophage 11
NZ_LT992463	Staphylococcus aureus isolate 2_LA_86 chromosome I	2857311	2783817	2829365	2857311	terminase,protease,integrase,holin,portal,tail,head,capsid	Staphylococcus_phage(90.77%)	67	2776956:2776971	2827645:2827660
2776956:2776971	attL	ATTAATTATTTTTAAC	NA	NA	NA	NA
WP_000473690.1|2783817_2785884_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000857198.1|2787717_2788755_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000391618.1|2788927_2789467_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	33.1	9.0e-14
WP_000705238.1|2789606_2789774_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000109189.1|2789844_2790030_-	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
WP_000345949.1|2790026_2790173_-	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
WP_001557601.1|2790246_2791101_-	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_001083975.1|2791112_2791829_-	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_000639923.1|2791992_2792235_+	DUF739 family protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
WP_001662741.1|2792247_2792691_+	hypothetical protein	NA	Q6R853	Staphylococcus_virus	100.0	2.0e-75
WP_000939495.1|2792705_2792846_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000772137.1|2792838_2793048_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_001148337.1|2793104_2793854_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_000435343.1|2793866_2794127_+	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001662405.1|2794146_2794284_+	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	3.7e-17
WP_001120936.1|2794359_2794680_+	DUF771 domain-containing protein	NA	A0A1W6JPI1	Staphylococcus_phage	100.0	7.4e-56
WP_000066011.1|2794676_2794838_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291488.1|2794930_2795191_+	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_001205732.1|2795199_2795463_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_061741411.1|2795459_2797415_+	AAA family ATPase	NA	A0A1W6JPG7	Staphylococcus_phage	96.6	0.0e+00
WP_000138475.1|2797416_2798337_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_072460574.1|2798417_2799035_+	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	100.0	1.2e-86
WP_114637998.1|2799035_2799506_+	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	98.7	1.4e-79
WP_061741412.1|2799535_2800420_+	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	96.6	1.2e-137
WP_000338528.1|2800426_2800645_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401964.1|2800653_2801058_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000101270.1|2801070_2801439_+	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000131381.1|2801442_2801685_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_114637999.1|2801699_2801954_+	DUF1024 family protein	NA	A0A1W6JPK6	Staphylococcus_phage	97.6	2.1e-37
WP_000714407.1|2801940_2802111_+	hypothetical protein	NA	A0A1W6JQ22	Staphylococcus_phage	100.0	5.7e-23
WP_031885699.1|2802103_2802640_+	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	99.4	7.9e-95
WP_000028780.1|2802676_2802919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000195782.1|2802915_2803104_+	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001125015.1|2803078_2803279_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000237868.1|2803281_2803431_+	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	98.0	1.1e-17
WP_001557462.1|2803430_2803631_+	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000590122.1|2803658_2804075_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988330.1|2804306_2804606_+	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|2804736_2805081_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625087.1|2805077_2806739_+|terminase	terminase large subunit	terminase	Q8LTH3	Staphylococcus_phage	100.0	0.0e+00
WP_000025266.1|2806754_2807942_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.0e-219
WP_031897301.1|2807925_2808663_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	99.6	3.0e-129
WP_000154567.1|2808685_2809831_+|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	100.0	1.9e-215
WP_000238240.1|2809850_2810135_+	hypothetical protein	NA	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
WP_000150936.1|2810124_2810409_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|2810392_2810755_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114341.1|2810751_2811156_+	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000565498.1|2811152_2811560_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268736.1|2811560_2812205_+|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	100.0	6.5e-120
WP_071621395.1|2812246_2812471_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_031906184.1|2812520_2812871_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	99.1	1.3e-58
WP_001549167.1|2812921_2813059_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_114638000.1|2813115_2817645_+|tail	phage tail tape measure protein	tail	W5R8I2	Staphylococcus_phage	98.5	0.0e+00
WP_000567408.1|2817641_2819126_+|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_000582165.1|2819141_2822927_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_001153681.1|2822916_2823069_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|2823115_2823403_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|2823460_2823757_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|2823906_2824083_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|2824135_2824243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|2824294_2824549_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|2824560_2825316_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|2825506_2825998_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000727649.1|2827077_2827527_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|2828211_2828562_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
2827645:2827660	attR	ATTAATTATTTTTAAC	NA	NA	NA	NA
WP_001791826.1|2828614_2828875_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|2829185_2829365_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
