assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900324245.1_8_LA_272	NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	1	11359-11452	1	CRISPRCasFinder	no	csa3	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	Type I-A	GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	34	1	1	11393-11418	NZ_LT992461.1_109179-109154	NA	1	1	Orphan	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	NA|75aa|up_5|NZ_LT992461.1_7452_7677_-,NA|148aa|up_2|NZ_LT992461.1_8888_9332_-,NA|101aa|down_1|NZ_LT992461.1_12586_12889_+	NA|501aa|up_9|NZ_LT992461.1_2484_3987_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_8|NZ_LT992461.1_4629_4944_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_7|NZ_LT992461.1_4943_6236_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_6|NZ_LT992461.1_6322_7177_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_5|NZ_LT992461.1_7452_7677_-	NA	NA|157aa|up_4|NZ_LT992461.1_7875_8346_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|148aa|up_3|NZ_LT992461.1_8458_8902_+	pfam06338, ComK, ComK protein	NA|148aa|up_2|NZ_LT992461.1_8888_9332_-	NA	NA|212aa|up_1|NZ_LT992461.1_9629_10265_+	pfam02517, Abi, CAAX protease self-immunity	NA|207aa|up_0|NZ_LT992461.1_10431_11052_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_0|NZ_LT992461.1_11614_12328_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_1|NZ_LT992461.1_12586_12889_+	NA	NA|122aa|down_2|NZ_LT992461.1_13143_13509_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_3|NZ_LT992461.1_13505_13859_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_4|NZ_LT992461.1_14108_14942_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|303aa|down_5|NZ_LT992461.1_15153_16062_-	pfam08378, NERD, Nuclease-related domain	NA|398aa|down_6|NZ_LT992461.1_16186_17380_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|531aa|down_7|NZ_LT992461.1_17751_19344_+	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|249aa|down_8|NZ_LT992461.1_19640_20387_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|158aa|down_9|NZ_LT992461.1_20391_20865_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD
GCF_900324245.1_8_LA_272	NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2	293398-293610	2	CRISPRCasFinder	no		csa3,DEDDh,TnsE_C,WYL,cas3,DinG	Orphan	TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	47	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	NA|46aa|up_4|NZ_LT992461.1_290259_290397_-,NA|107aa|down_0|NZ_LT992461.1_293643_293964_+	NA|232aa|up_9|NZ_LT992461.1_282951_283647_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|507aa|up_8|NZ_LT992461.1_283999_285520_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|452aa|up_7|NZ_LT992461.1_286035_287391_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|357aa|up_6|NZ_LT992461.1_287405_288476_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|401aa|up_5|NZ_LT992461.1_288793_289996_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|46aa|up_4|NZ_LT992461.1_290259_290397_-	NA	NA|70aa|up_3|NZ_LT992461.1_290524_290734_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|98aa|up_2|NZ_LT992461.1_290745_291039_-	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|495aa|up_1|NZ_LT992461.1_291204_292689_+	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|216aa|up_0|NZ_LT992461.1_292716_293364_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|107aa|down_0|NZ_LT992461.1_293643_293964_+	NA	NA|291aa|down_1|NZ_LT992461.1_295605_296478_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|214aa|down_2|NZ_LT992461.1_296563_297205_-	PRK00043, thiE, thiamine phosphate synthase	NA|264aa|down_3|NZ_LT992461.1_297206_297998_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|277aa|down_4|NZ_LT992461.1_297981_298812_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|230aa|down_5|NZ_LT992461.1_298804_299494_-	TIGR04306, salvage_TenA, thiaminase II	NA|232aa|down_6|NZ_LT992461.1_299880_300576_-	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|132aa|down_7|NZ_LT992461.1_300964_301360_-	pfam00436, SSB, Single-strand binding protein family	NA|147aa|down_8|NZ_LT992461.1_301553_301994_+	pfam14183, YwpF, YwpF-like protein	NA|147aa|down_9|NZ_LT992461.1_302050_302491_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ
GCF_900324245.1_8_LA_272	NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	3	349028-349178	3	CRISPRCasFinder	no	csa3,TnsE_C	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	NA|77aa|up_5|NZ_LT992461.1_343900_344131_-,NA|364aa|up_0|NZ_LT992461.1_347918_349010_+,NA|35aa|down_0|NZ_LT992461.1_349507_349612_-,NA|53aa|down_2|NZ_LT992461.1_350291_350450_+,NA|31aa|down_3|NZ_LT992461.1_350885_350978_+	NA|237aa|up_9|NZ_LT992461.1_339510_340221_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_LT992461.1_340341_340785_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_LT992461.1_340984_341398_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_LT992461.1_341855_343229_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_LT992461.1_343900_344131_-	NA	NA|313aa|up_4|NZ_LT992461.1_344161_345100_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_LT992461.1_345533_346199_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_LT992461.1_346350_346671_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_LT992461.1_346672_347653_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_LT992461.1_347918_349010_+	NA	NA|35aa|down_0|NZ_LT992461.1_349507_349612_-	NA	NA|57aa|down_1|NZ_LT992461.1_350128_350299_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_2|NZ_LT992461.1_350291_350450_+	NA	NA|31aa|down_3|NZ_LT992461.1_350885_350978_+	NA	NA|286aa|down_4|NZ_LT992461.1_351107_351965_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_LT992461.1_352032_352815_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|203aa|down_6|NZ_LT992461.1_353104_353713_-	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|345aa|down_7|NZ_LT992461.1_353740_354775_-	pfam13676, TIR_2, TIR domain	NA|490aa|down_8|NZ_LT992461.1_354868_356338_-	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|97aa|down_9|NZ_LT992461.1_356397_356688_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)
GCF_900324245.1_8_LA_272	NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	4	689163-689257	4	CRISPRCasFinder	no		csa3,DEDDh,TnsE_C,WYL,cas3,DinG	Orphan	AGGCTCTTATGCAGTTGGTGCGAAGCAA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	NA|249aa|up_9|NZ_LT992461.1_678748_679495_+,NA|121aa|down_0|NZ_LT992461.1_689925_690288_-,NA|105aa|down_8|NZ_LT992461.1_697100_697415_+	NA|249aa|up_9|NZ_LT992461.1_678748_679495_+	NA	NA|398aa|up_8|NZ_LT992461.1_679718_680912_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|up_7|NZ_LT992461.1_680923_681673_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|up_6|NZ_LT992461.1_681665_682481_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_5|NZ_LT992461.1_682477_683347_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_4|NZ_LT992461.1_683343_684279_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|up_3|NZ_LT992461.1_684291_685890_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|up_2|NZ_LT992461.1_686032_687334_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_1|NZ_LT992461.1_687326_688145_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|up_0|NZ_LT992461.1_688155_688977_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|121aa|down_0|NZ_LT992461.1_689925_690288_-	NA	NA|273aa|down_1|NZ_LT992461.1_690550_691369_-	PRK08589, PRK08589, SDR family oxidoreductase	NA|513aa|down_2|NZ_LT992461.1_691602_693141_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|141aa|down_3|NZ_LT992461.1_693252_693675_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|133aa|down_4|NZ_LT992461.1_694146_694545_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|down_5|NZ_LT992461.1_694571_694982_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|128aa|down_6|NZ_LT992461.1_695436_695820_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|403aa|down_7|NZ_LT992461.1_695886_697095_+	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|105aa|down_8|NZ_LT992461.1_697100_697415_+	NA	NA|140aa|down_9|NZ_LT992461.1_699291_699711_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)
GCF_900324245.1_8_LA_272	NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	5	1264839-1265038	5	CRISPRCasFinder	no		csa3,DEDDh,TnsE_C,WYL,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	31	2	2	1264870-1264894|1264926-1264950	NZ_LT992461.1_1265039-1265063|NZ_LT992461.1_304472-304496	NA	3	3	Orphan	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	NA,NA|131aa|down_5|NZ_LT992461.1_1270214_1270607_+	NA|574aa|up_9|NZ_LT992461.1_1252285_1254007_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|NZ_LT992461.1_1254150_1254825_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|585aa|up_7|NZ_LT992461.1_1255071_1256826_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|NZ_LT992461.1_1256828_1257569_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|NZ_LT992461.1_1257681_1258125_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|NZ_LT992461.1_1258117_1258819_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|NZ_LT992461.1_1259159_1261451_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|NZ_LT992461.1_1261676_1262381_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_LT992461.1_1262529_1263321_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_LT992461.1_1263336_1264773_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NZ_LT992461.1_1265348_1266110_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|305aa|down_1|NZ_LT992461.1_1266361_1267276_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|NZ_LT992461.1_1267303_1267708_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_3|NZ_LT992461.1_1267722_1268604_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|NZ_LT992461.1_1268835_1269834_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_5|NZ_LT992461.1_1270214_1270607_+	NA	NA|459aa|down_6|NZ_LT992461.1_1270735_1272112_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|NZ_LT992461.1_1272345_1273338_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_8|NZ_LT992461.1_1273663_1274614_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|down_9|NZ_LT992461.1_1274665_1275325_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_900324245.1_8_LA_272	NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	6	1663463-1663571	6	CRISPRCasFinder	no		csa3,DEDDh,TnsE_C,WYL,cas3,DinG	Orphan	AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	39	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	NA,NA|169aa|down_4|NZ_LT992461.1_1667304_1667811_+,NA|239aa|down_5|NZ_LT992461.1_1667972_1668689_+	NA|209aa|up_9|NZ_LT992461.1_1652967_1653594_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|NZ_LT992461.1_1653863_1654802_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|NZ_LT992461.1_1655247_1655784_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|NZ_LT992461.1_1655953_1656430_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|NZ_LT992461.1_1656469_1657765_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|NZ_LT992461.1_1657792_1658314_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|NZ_LT992461.1_1658812_1659823_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|139aa|up_2|NZ_LT992461.1_1660098_1660515_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_LT992461.1_1660511_1662173_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_LT992461.1_1662657_1663293_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_LT992461.1_1663622_1664510_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_LT992461.1_1664660_1665611_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_LT992461.1_1665665_1666385_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_LT992461.1_1666368_1667169_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_LT992461.1_1667304_1667811_+	NA	NA|239aa|down_5|NZ_LT992461.1_1667972_1668689_+	NA	NA|263aa|down_6|NZ_LT992461.1_1668857_1669646_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_LT992461.1_1669897_1670272_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_LT992461.1_1671219_1672149_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_LT992461.1_1672341_1672566_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_900324245.1_8_LA_272	NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	7	1825817-1825899	7	CRISPRCasFinder	no		csa3,DEDDh,TnsE_C,WYL,cas3,DinG	Orphan	CACCCCAACTCGCATTGCTTGTAGAA	26	1	26	1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873|1825843-1825873	NZ_LT992461.1_109107-109137|NZ_LT992461.1_109217-109247|NZ_LT992461.1_177317-177347|NZ_LT992461.1_1963109-1963079|NZ_LT992461.1_2001910-2001940|NZ_LT992461.1_11350-11320|NZ_LT992461.1_467894-467924|NZ_LT992461.1_512959-512929|NZ_LT992461.1_1246851-1246881|NZ_LT992461.1_1246909-1246939|NZ_LT992461.1_1246967-1246997|NZ_LT992461.1_1385537-1385507|NZ_LT992461.1_1654960-1654930|NZ_LT992461.1_1779530-1779500|NZ_LT992461.1_1870762-1870792|NZ_LT992461.1_2094875-2094905|NZ_LT992461.1_2195203-2195173|NZ_LT992461.1_2195257-2195227|NZ_LT992461.1_2800017-2799987|NZ_LT992461.1_478642-478672|NZ_LT992461.1_910410-910440|NZ_LT992461.1_1834824-1834854|NZ_LT992461.1_1874900-1874870|NZ_LT992461.1_2404122-2404152|NZ_LT992461.1_2450212-2450242|NZ_LT992461.1_2890791-2890761	NA	1	1	Orphan	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	NA,NA	NA|280aa|up_9|NZ_LT992461.1_1813066_1813906_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_LT992461.1_1814079_1814730_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_LT992461.1_1814726_1814963_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_LT992461.1_1815231_1817217_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_LT992461.1_1817224_1820071_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_LT992461.1_1820680_1821613_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_LT992461.1_1821618_1822458_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_LT992461.1_1822465_1822951_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_LT992461.1_1822958_1824398_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|NZ_LT992461.1_1824464_1825400_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_LT992461.1_1826167_1827079_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_LT992461.1_1827075_1828071_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_LT992461.1_1828179_1829124_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_LT992461.1_1829693_1830281_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|NZ_LT992461.1_1830463_1832098_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|NZ_LT992461.1_1832304_1833207_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|NZ_LT992461.1_1833909_1834539_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|NZ_LT992461.1_1835313_1836327_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_LT992461.1_1836379_1837390_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_LT992461.1_1837528_1838719_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_900324245.1_8_LA_272	NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	8	1875169-1875249	8	CRISPRCasFinder	no		csa3,DEDDh,TnsE_C,WYL,cas3,DinG	Orphan	TCTTTATCATTTCTGTCCCACTCCC	25	1	1	1875194-1875224	NZ_LT992461.1_1820270-1820240	NA	1	1	Orphan	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	NA,NA|81aa|down_8|NZ_LT992461.1_1883707_1883950_-	NA|180aa|up_9|NZ_LT992461.1_1867299_1867839_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_8|NZ_LT992461.1_1867988_1868309_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NZ_LT992461.1_1868452_1868809_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NZ_LT992461.1_1868966_1869347_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_5|NZ_LT992461.1_1869526_1870405_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|up_4|NZ_LT992461.1_1871106_1871493_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|up_3|NZ_LT992461.1_1871485_1871782_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|up_2|NZ_LT992461.1_1872031_1873057_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|up_1|NZ_LT992461.1_1873049_1873745_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_0|NZ_LT992461.1_1873762_1874584_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_0|NZ_LT992461.1_1875391_1875586_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|NZ_LT992461.1_1875819_1876671_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|NZ_LT992461.1_1876998_1877760_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|NZ_LT992461.1_1877858_1879166_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_4|NZ_LT992461.1_1879271_1880522_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|NZ_LT992461.1_1880511_1880976_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|NZ_LT992461.1_1881126_1882524_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|350aa|down_7|NZ_LT992461.1_1882591_1883641_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|81aa|down_8|NZ_LT992461.1_1883707_1883950_-	NA	NA|328aa|down_9|NZ_LT992461.1_1883960_1884944_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2
GCF_900324245.1_8_LA_272	NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	9	2802450-2802532	9	CRISPRCasFinder	no		csa3,DEDDh,TnsE_C,WYL,cas3,DinG	Orphan	GAAGCTGACGAAAAAGTCAGCTTAC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	NA,NA	NA|454aa|up_9|NZ_LT992461.1_2787283_2788645_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_8|NZ_LT992461.1_2788988_2790746_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_7|NZ_LT992461.1_2790767_2791736_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_6|NZ_LT992461.1_2792004_2792949_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_5|NZ_LT992461.1_2792948_2793806_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_4|NZ_LT992461.1_2794000_2795230_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_3|NZ_LT992461.1_2795678_2798876_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_2|NZ_LT992461.1_2798896_2799838_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|up_1|NZ_LT992461.1_2800207_2801506_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|up_0|NZ_LT992461.1_2801710_2802124_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_0|NZ_LT992461.1_2802629_2803319_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_1|NZ_LT992461.1_2803493_2804549_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_2|NZ_LT992461.1_2804864_2805983_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_3|NZ_LT992461.1_2806123_2806624_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_4|NZ_LT992461.1_2806870_2808073_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_5|NZ_LT992461.1_2808160_2809108_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_6|NZ_LT992461.1_2809230_2809725_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_7|NZ_LT992461.1_2809822_2810593_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|408aa|down_8|NZ_LT992461.1_2810636_2811860_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|383aa|down_9|NZ_LT992461.1_2811859_2813008_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_900324245.1_8_LA_272	NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	10	2890786-2890873	10	CRISPRCasFinder	no	csa3	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	Type I-A	AAGAAATTCTACAAGCAATGCGCGTTGGG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,TnsE_C,WYL,cas3,DinG	NA|75aa|up_5|NZ_LT992461.1_2886897_2887122_-,NA|148aa|up_2|NZ_LT992461.1_2888333_2888777_-,NA	NA|501aa|up_9|NZ_LT992461.1_2881929_2883432_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_8|NZ_LT992461.1_2884074_2884389_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_7|NZ_LT992461.1_2884388_2885681_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_6|NZ_LT992461.1_2885767_2886622_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_5|NZ_LT992461.1_2886897_2887122_-	NA	NA|157aa|up_4|NZ_LT992461.1_2887320_2887791_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|148aa|up_3|NZ_LT992461.1_2887903_2888347_+	pfam06338, ComK, ComK protein	NA|148aa|up_2|NZ_LT992461.1_2888333_2888777_-	NA	NA|212aa|up_1|NZ_LT992461.1_2889074_2889710_+	pfam02517, Abi, CAAX protease self-immunity	NA|200aa|up_0|NZ_LT992461.1_2889896_2890496_+	pfam02517, Abi, CAAX protease self-immunity	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
