The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	960	30507	2891536	protease,transposase	Staphylococcus_phage(88.89%)	34	NA	NA
WP_000077346.1|960_2004_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261672.1|2484_3987_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|4629_4944_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|4943_6236_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|6322_7177_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|7452_7677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|7875_8346_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_001153741.1|8458_8902_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030474.1|8888_9332_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001168915.1|9629_10265_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492903.1|10431_11052_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|11614_12328_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|12586_12889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|13143_13509_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|13505_13859_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|14108_14942_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|15153_16062_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|16186_17380_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|17751_19344_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|19640_20387_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|20391_20865_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|20930_21188_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778553.1|21184_22186_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|22190_23669_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|23827_24283_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|24585_25248_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|25328_26324_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|26399_27026_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|27066_27411_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|27508_28081_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|28278_28836_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|29206_29383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|29393_29777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|30225_30507_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
>prophage 2
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	154964	253617	2891536	tail,portal,integrase,protease,transposase,capsid,tRNA,holin,terminase,head	Staphylococcus_phage(86.67%)	114	241509:241525	252098:252114
WP_031775281.1|154964_155330_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_031775282.1|155338_157402_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_031775283.1|157404_158517_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.0	8.7e-11
WP_000267034.1|159062_159236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188070.1|159686_160727_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713062.1|160783_161626_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033968.1|161622_162180_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966291.1|162239_162764_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|162884_163448_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221650.1|163511_164252_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|164251_165124_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645735.1|165120_165801_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991294.1|165801_166698_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	6.5e-17
WP_000691584.1|166694_167075_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|167332_167509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|167750_167849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068535.1|168048_169335_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669725.1|169605_171675_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000239613.1|172063_173056_+	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	99.6	2.4e-161
WP_000595612.1|173317_174334_-	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	29.3	1.1e-25
WP_000791397.1|174355_175411_-	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	35.4	8.7e-37
WP_000206618.1|175842_177066_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045074.1|177448_178756_+	potassium transporter KtrB	NA	NA	NA	NA	NA
WP_000216896.1|179294_179921_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	44.5	2.4e-42
WP_000201398.1|179917_180097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000240642.1|180637_182254_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|182329_182614_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197638.1|182788_183532_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000119492.1|183556_184801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000522384.1|184997_185624_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_000867947.1|185931_186717_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
WP_001549197.1|187318_187453_-	delta-lysin family phenol-soluble modulin	NA	NA	NA	NA	NA
WP_001105708.1|187688_188258_+	accessory gene regulator AgrB	NA	NA	NA	NA	NA
WP_001093929.1|188254_188395_+	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_000688492.1|189729_190446_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
WP_001253294.1|190819_191779_-	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000141407.1|191775_193260_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.6	4.0e-19
WP_000790325.1|193408_194359_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001052260.1|194542_195793_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.0	6.9e-41
WP_000581077.1|196001_196226_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_000266900.1|196285_197365_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_001283612.1|197668_198304_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_000602063.1|198556_200485_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.2	2.7e-52
WP_014937053.1|200629_200758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000106315.1|200846_202457_+	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.8	4.3e-19
WP_000159047.1|202773_203799_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
WP_000372755.1|203791_204256_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_001086730.1|204228_204891_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_000590802.1|204871_205333_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_014937054.1|205370_205526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001255777.1|205843_207532_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_000669789.1|208779_208959_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|209269_209530_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|209581_209932_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_031865878.1|211428_211920_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	99.4	1.6e-86
WP_000861038.1|212110_212866_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|212877_213132_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|213183_213291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|213343_213520_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|213669_213966_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|214023_214311_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|214357_214510_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582158.1|214499_218285_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
WP_000567408.1|218300_219785_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001795393.1|219781_224311_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	100.0	0.0e+00
WP_001789580.1|224367_224529_-	hypothetical protein	NA	A0A0H3U330	Staphylococcus_phage	100.0	1.6e-22
WP_001096355.1|224555_224906_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_072050172.1|224955_225180_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_000268741.1|225221_225866_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|225866_226274_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114225.1|226270_226675_-	HK97 gp10 family phage protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|226671_227034_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|227017_227302_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|227291_227576_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154555.1|227595_228741_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000861914.1|228764_229502_-|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	100.0	2.3e-129
WP_054104817.1|229485_230673_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.0e-219
WP_000625088.1|230688_232350_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|232346_232691_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|232821_233121_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590126.1|233352_233769_-	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
WP_000265041.1|233796_233997_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000595265.1|233996_234146_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195820.1|234142_234349_-	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
WP_001066444.1|234385_234922_-	dUTP diphosphatase	NA	A0A1X9H0S5	Staphylococcus_phage	100.0	1.4e-96
WP_000197967.1|234914_235325_-	hypothetical protein	NA	C8CH13	Staphylococcus_phage	100.0	2.3e-70
WP_001105598.1|235321_235831_-	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	100.0	3.2e-93
WP_000982711.1|235827_236277_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	99.3	2.1e-80
WP_000131366.1|236341_236584_-	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
WP_000101274.1|236587_236956_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000401964.1|236968_237373_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000338528.1|237381_237600_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_016047539.1|237606_238491_-	DnaD domain protein	NA	I1W658	Staphylococcus_phage	100.0	1.1e-138
WP_024937184.1|238520_238991_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	95.5	1.3e-77
WP_071621397.1|238991_239609_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138481.1|239689_240610_-	recombinase RecT	NA	A0A1V0E5D7	Staphylococcus_phage	100.0	1.0e-166
WP_000700562.1|240611_242555_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	99.2	0.0e+00
241509:241525	attL	ATATTCAAATTTTTGAT	NA	NA	NA	NA
WP_001205732.1|242563_242827_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_031824013.1|242835_243096_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	98.8	1.2e-43
WP_000165371.1|243100_243403_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000066020.1|243497_243659_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120197.1|243655_243976_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000435341.1|244592_244853_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000639926.1|244865_245108_-	DUF739 family protein	NA	A0A075LZJ3	Staphylococcus_phage	100.0	2.8e-39
WP_001083975.1|245271_245988_+	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_001557601.1|245999_246854_+	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_000345949.1|246927_247074_+	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
WP_000100503.1|247070_247256_+	hypothetical protein	NA	A0A1X9H0K5	Staphylococcus_phage	100.0	1.1e-24
WP_000705240.1|247455_247638_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001549185.1|247715_248429_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857198.1|248619_249657_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000196911.1|250662_250917_+	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_001825891.1|251038_252058_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000094575.1|252087_253617_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
252098:252114	attR	ATATTCAAATTTTTGAT	NA	NA	NA	NA
>prophage 3
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	1320051	1364093	2891536	portal,tail,integrase,protease,plate,capsid,holin,terminase,head	Staphylococcus_phage(100.0%)	63	1314613:1314628	1372646:1372661
1314613:1314628	attL	ATTTTCTAATAAATGA	NA	NA	NA	NA
WP_000264745.1|1320051_1321257_-|integrase	site-specific integrase	integrase	Q4ZBP1	Staphylococcus_phage	99.8	1.9e-221
WP_000191466.1|1321382_1321997_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_074370993.1|1321993_1322140_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	1.7e-15
WP_000449655.1|1322229_1322625_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755718.1|1322653_1323088_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_031838007.1|1323105_1323567_-	toxin	NA	A0A0H3U308	Staphylococcus_phage	98.7	1.3e-82
WP_001260485.1|1323579_1323903_-	helix-turn-helix transcriptional regulator	NA	R4WAK9	Staphylococcus_phage	99.1	4.5e-53
WP_000272860.1|1324066_1324315_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PED6	Staphylococcus_phage	98.8	4.8e-39
WP_001025401.1|1324330_1324576_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|1324544_1324910_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001036302.1|1324964_1325180_+	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
WP_001124190.1|1325204_1325468_+	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
WP_001285963.1|1325480_1325642_+	DUF1270 family protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
WP_000174994.1|1325720_1326044_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_031775157.1|1326058_1326421_+	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	99.2	1.4e-55
WP_000762547.1|1326417_1327584_+	DUF2800 domain-containing protein	NA	A0A2D1G5B8	Staphylococcus_phage	100.0	8.3e-222
WP_000645042.1|1327609_1328167_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_001796208.1|1328235_1330188_+	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_001164629.1|1330200_1330386_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113977.1|1330385_1330787_+	PVL family protein	NA	A7TWG8	Staphylococcus_phage	100.0	9.5e-69
WP_015984497.1|1330786_1331044_+	DUF3310 domain-containing protein	NA	A7TWG9	Staphylococcus_phage	100.0	3.4e-43
WP_015986192.1|1331046_1331247_+	hypothetical protein	NA	A7TWH0	Staphylococcus_phage	100.0	5.6e-30
WP_015986193.1|1331255_1331504_+	hypothetical protein	NA	A7TWH1	Staphylococcus_phage	100.0	8.0e-42
WP_001642659.1|1331517_1331919_+	hypothetical protein	NA	A7TWH2	Staphylococcus_phage	100.0	2.0e-71
WP_001642661.1|1331915_1332287_+	hypothetical protein	NA	A7TWH3	Staphylococcus_phage	100.0	2.0e-65
WP_015986194.1|1332283_1332592_+	hypothetical protein	NA	A7TWH4	Staphylococcus_phage	100.0	1.2e-50
WP_015986195.1|1332584_1332839_+	DUF1024 family protein	NA	A7TWH5	Staphylococcus_phage	100.0	1.1e-38
WP_015986196.1|1332825_1332996_+	hypothetical protein	NA	A7TWH6	Staphylococcus_phage	100.0	1.9e-23
WP_015977976.1|1333549_1333756_+	DUF1381 domain-containing protein	NA	A7TWH8	Staphylococcus_phage	100.0	9.9e-30
WP_000141259.1|1333752_1333956_+	hypothetical protein	NA	A7TWH9	Staphylococcus_phage	100.0	8.8e-31
WP_000608283.1|1333948_1334185_+	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	100.0	3.6e-36
WP_001596346.1|1334174_1334564_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.6e-65
WP_000595260.1|1334560_1334713_+	transcriptional activator RinB	NA	A7TWI2	Staphylococcus_phage	100.0	2.6e-19
WP_015986198.1|1334780_1334981_+	DUF1514 family protein	NA	A7TWI3	Staphylococcus_phage	100.0	6.5e-26
WP_000884844.1|1335032_1337480_+	virulence-associated E family protein	NA	R4WAL1	Staphylococcus_phage	100.0	0.0e+00
WP_001801650.1|1337588_1337687_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000665203.1|1337820_1338111_+	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_078066486.1|1338091_1339459_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	1.1e-262
WP_000528512.1|1339471_1339909_+	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_000160693.1|1340065_1340380_+	HNH endonuclease	NA	A0A2I6PF37	Staphylococcus_phage	100.0	2.5e-56
WP_000778933.1|1340507_1340813_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_016187448.1|1340802_1342494_+|terminase	terminase large subunit	terminase	M9QX14	Staphylococcus_phage	100.0	0.0e+00
WP_021285987.1|1342498_1343737_+|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	99.8	3.4e-234
WP_000061866.1|1343720_1344494_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_021285988.1|1344505_1345669_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	99.5	4.7e-217
WP_000050973.1|1345737_1346016_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|1346027_1346360_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|1346356_1346758_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|1346758_1347154_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|1347188_1347830_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169127.1|1347921_1348377_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_031775785.1|1348434_1348785_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	99.1	2.0e-54
WP_000438833.1|1348826_1348985_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001190533.1|1355199_1356024_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|1356032_1357616_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|1357615_1357906_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|1357921_1359832_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_021285990.1|1359831_1361298_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.8	5.8e-273
WP_001166599.1|1361297_1361687_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|1361679_1361844_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|1361889_1362189_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339146.1|1362324_1362627_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_021285991.1|1362638_1364093_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	99.6	7.5e-289
1372646:1372661	attR	TCATTTATTAGAAAAT	NA	NA	NA	NA
>prophage 4
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	1757691	1765511	2891536		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|1757691_1758747_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|1758746_1759433_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_031795501.1|1759407_1759881_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|1760221_1760662_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637685.1|1760942_1761527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|1761625_1762339_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|1762342_1762762_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|1762763_1763432_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604516.1|1763782_1764376_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_001217786.1|1764359_1765511_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 5
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	1777481	1791039	2891536		uncultured_Caudovirales_phage(55.56%)	12	NA	NA
WP_000663034.1|1777481_1778540_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
WP_000197271.1|1778698_1779241_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429003.1|1779977_1780895_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_014936998.1|1780985_1781093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|1781164_1782670_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|1783009_1783510_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068490.1|1783529_1784396_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|1785197_1785596_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|1785558_1787664_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|1787783_1788755_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|1789124_1790096_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245567.1|1790082_1791039_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
>prophage 6
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	1879271	1925233	2891536	portal,tail,integrase,plate,capsid,holin,terminase,head	Staphylococcus_phage(70.15%)	71	1874132:1874147	1931941:1931956
1874132:1874147	attL	AAAGAATTACCAAAAG	NA	NA	NA	NA
WP_001825559.1|1879271_1880522_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.3e-111
WP_001010508.1|1880511_1880976_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|1881126_1882524_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145730.1|1882591_1883641_-|integrase	site-specific integrase	integrase	A0A0H4ISP4	Staphylococcus_phage	100.0	2.7e-203
WP_016187262.1|1883707_1883950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021285964.1|1883960_1884944_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000142628.1|1884995_1885670_-	LexA family transcriptional regulator	NA	A0A1W6JPS3	Staphylococcus_phage	92.0	2.3e-115
WP_016187264.1|1885861_1886101_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J3I3	uncultured_Caudovirales_phage	88.6	9.4e-32
WP_001153175.1|1886115_1886277_+	hypothetical protein	NA	Q4ZBN4	Staphylococcus_phage	100.0	1.9e-20
WP_021285963.1|1886269_1886506_-	hypothetical protein	NA	Q4ZBN3	Staphylococcus_phage	97.4	8.7e-38
WP_031867648.1|1886570_1887311_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.2	3.5e-133
WP_001555746.1|1887335_1887551_+	hypothetical protein	NA	E9LT76	Staphylococcus_phage	98.6	5.0e-32
WP_016187267.1|1887506_1887752_-	hypothetical protein	NA	E9LT77	Staphylococcus_phage	96.3	1.4e-35
WP_000977381.1|1887822_1888044_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_000048124.1|1888036_1888198_+	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
WP_031867649.1|1888290_1888551_+	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	98.8	1.5e-43
WP_000002517.1|1888565_1889045_+	siphovirus Gp157 family protein	NA	Q9MBS3	Staphylococcus_prophage	100.0	8.1e-83
WP_001043063.1|1889044_1889683_+	ERF family protein	NA	Q9MBS2	Staphylococcus_prophage	100.0	1.7e-115
WP_031867650.1|1889682_1890111_+	single-stranded DNA-binding protein	NA	A0A2H4PQQ4	Staphylococcus_phage	100.0	3.5e-53
WP_031867651.1|1890124_1890799_+	phi PV83 orf 19-like protein	NA	R4IH15	Staphylococcus_phage	98.2	6.8e-128
WP_001037657.1|1890791_1891547_+	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_001132243.1|1891546_1891903_+	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_031882232.1|1891899_1893141_+	AAA family ATPase	NA	M9NSS7	Staphylococcus_phage	99.5	2.2e-228
WP_031794786.1|1893137_1893353_+	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	98.6	1.8e-34
WP_001123688.1|1893355_1893577_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_031872375.1|1893586_1893991_+	DUF1064 domain-containing protein	NA	Q6R835	Staphylococcus_virus	99.3	3.5e-71
WP_001187243.1|1893995_1894181_+	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000101252.1|1894181_1894487_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_031794870.1|1894614_1894974_+	phage protein	NA	Q4ZBU0	Staphylococcus_virus	98.3	3.8e-61
WP_015994745.1|1894973_1895231_+	DUF3310 domain-containing protein	NA	B7T0H1	Staphylococcus_virus	100.0	7.5e-43
WP_015994746.1|1895233_1895434_+	hypothetical protein	NA	B7T0H2	Staphylococcus_virus	100.0	3.7e-29
WP_015994747.1|1895430_1896120_+	N-6 DNA methylase	NA	B7T0H3	Staphylococcus_virus	100.0	6.1e-132
WP_015994748.1|1896133_1896340_+	hypothetical protein	NA	B7T0H4	Staphylococcus_virus	100.0	7.8e-35
WP_031765535.1|1896741_1897107_+	hypothetical protein	NA	A7YGS3	Staphylococcus_virus	94.2	4.3e-60
WP_031867695.1|1897099_1897351_+	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	97.6	5.4e-38
WP_000028424.1|1897340_1897514_+	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_000889682.1|1897514_1897676_+	hypothetical protein	NA	W5R9K6	Staphylococcus_phage	100.0	1.4e-23
WP_031807824.1|1897690_1898224_+	dUTP diphosphatase	NA	W5R8N7	Staphylococcus_phage	99.4	3.0e-94
WP_031867680.1|1898260_1898467_+	DUF1381 domain-containing protein	NA	A7TWH8	Staphylococcus_phage	98.5	2.9e-29
WP_000141259.1|1898463_1898667_+	hypothetical protein	NA	A7TWH9	Staphylococcus_phage	100.0	8.8e-31
WP_000608283.1|1898659_1898896_+	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	100.0	3.6e-36
WP_001623479.1|1898885_1899272_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	98.4	3.4e-63
WP_025174881.1|1899271_1899445_+	transcriptional regulator	NA	Q4ZAX6	Staphylococcus_virus	91.2	4.6e-20
WP_000286968.1|1899445_1899847_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_031867679.1|1900199_1900694_+|terminase	terminase	terminase	R4IH30	Staphylococcus_phage	98.8	1.6e-73
WP_001807202.1|1900686_1901895_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0H4ITX6	Staphylococcus_phage	100.0	1.0e-235
WP_001159669.1|1901848_1903327_+|portal	phage portal protein	portal	Q4ZB45	Staphylococcus_virus	99.6	4.3e-284
WP_049948321.1|1903265_1904246_+|head	phage head morphogenesis protein	head	Q4ZAW9	Staphylococcus_virus	98.5	5.6e-179
WP_000366936.1|1904343_1904940_+	phage scaffolding protein	NA	A0A0H4IP83	Staphylococcus_phage	100.0	5.7e-102
WP_001135533.1|1904960_1905785_+|capsid	N4-gp56 family major capsid protein	capsid	A0A0H4J347	Staphylococcus_phage	100.0	4.3e-148
WP_000278802.1|1905801_1906128_+	Rho termination factor N-terminal domain-containing protein	NA	A0A0H4ITX8	Staphylococcus_phage	100.0	1.2e-50
WP_000338934.1|1906127_1906442_+|head,tail	phage head-tail connector protein	head,tail	A0A0H4IPX4	Staphylococcus_phage	100.0	2.6e-53
WP_031794845.1|1906434_1906770_+|head	phage head closure protein	head	A0A0H4ISR6	Staphylococcus_phage	100.0	5.2e-60
WP_001151336.1|1906756_1907170_+	HK97 gp10 family phage protein	NA	A0A0H4IPA6	Staphylococcus_phage	100.0	3.4e-77
WP_000270194.1|1907182_1907620_+	DUF3168 domain-containing protein	NA	A0A0H4J350	Staphylococcus_phage	100.0	7.9e-77
WP_000046067.1|1907606_1908167_+	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_000141084.1|1908228_1908723_+	hypothetical protein	NA	A0A0H4IPX9	Staphylococcus_phage	100.0	2.5e-87
WP_000204079.1|1908743_1909085_+	hypothetical protein	NA	W5R8J4	Staphylococcus_phage	100.0	3.5e-56
WP_031867677.1|1909087_1912057_+|terminase	terminase	terminase	R4IG82	Staphylococcus_phage	89.6	4.6e-269
WP_000560199.1|1912071_1913007_+|tail	phage tail family protein	tail	A0A0H4J355	Staphylococcus_phage	100.0	4.8e-180
WP_001144705.1|1913017_1914904_+|tail	phage tail protein	tail	W5RAP4	Staphylococcus_phage	99.8	0.0e+00
WP_031867676.1|1914916_1916815_+	hypothetical protein	NA	W5R996	Staphylococcus_phage	98.1	0.0e+00
WP_031867675.1|1916814_1918638_+|plate	phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	95.4	2.4e-284
WP_031867674.1|1918637_1919015_+	DUF2977 domain-containing protein	NA	B7T0E5	Staphylococcus_virus	96.0	6.4e-59
WP_001800921.1|1919024_1919198_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000466752.1|1919238_1919538_+	DUF2951 family protein	NA	B7T0E7	Staphylococcus_virus	100.0	2.5e-42
WP_031867673.1|1919674_1921549_+	glucosaminidase domain-containing protein	NA	W5R999	Staphylococcus_phage	97.6	0.0e+00
WP_016187459.1|1922031_1922286_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	98.8	1.2e-40
WP_000861038.1|1922297_1923053_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000273396.1|1923627_1924047_+	hypothetical protein	NA	Q9MBN1	Staphylococcus_prophage	100.0	8.7e-81
WP_015980424.1|1924060_1925233_+	hypothetical protein	NA	Q9MBN0	Staphylococcus_prophage	100.0	2.0e-215
1931941:1931956	attR	AAAGAATTACCAAAAG	NA	NA	NA	NA
>prophage 7
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	1974426	1997651	2891536	integrase	Streptococcus_phage(94.74%)	23	1962883:1962900	2001926:2001943
1962883:1962900	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
WP_000154905.1|1974426_1978080_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
WP_000670757.1|1978245_1979148_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000902814.1|1979474_1979864_+	YisL family protein	NA	NA	NA	NA	NA
WP_001291561.1|1980128_1981346_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|1981427_1981631_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|1982091_1982322_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|1982318_1982741_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|1983245_1983599_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|1983658_1983826_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691736.1|1983944_1985864_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_001814923.1|1985879_1985996_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224318.1|1986240_1987173_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_000769868.1|1987169_1988171_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|1988167_1990345_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000331160.1|1990347_1992795_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000506270.1|1992778_1993285_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|1993259_1993757_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|1993873_1994095_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|1994137_1995343_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000879507.1|1995365_1995518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|1995520_1996906_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|1996934_1997321_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|1997336_1997651_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
2001926:2001943	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 8
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	2024574	2076587	2891536	holin,bacteriocin,protease,tRNA	Streptococcus_phage(40.0%)	52	NA	NA
WP_000448934.1|2024574_2025564_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|2025858_2026254_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217731.1|2026624_2027344_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959279.1|2027464_2028451_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082727.1|2028498_2030307_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
WP_000896697.1|2030766_2031573_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|2031595_2031961_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224612.1|2032064_2032658_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242104.1|2032843_2033191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|2033207_2033843_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|2033859_2034669_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669942.1|2034665_2035520_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|2035540_2036926_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|2036935_2038780_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933200.1|2039057_2039828_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|2040024_2041110_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570705.1|2041451_2043020_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889181.1|2043161_2043920_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|2044113_2044623_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154224.1|2044735_2045926_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|2045903_2047079_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340124.1|2047509_2048994_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_072434963.1|2048974_2049235_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049947.1|2049234_2050797_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
WP_000928413.1|2051098_2051902_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_014937014.1|2052120_2054445_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|2054461_2055820_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_031795489.1|2055958_2057470_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|2057958_2058528_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|2058737_2058956_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668814.1|2059036_2060023_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|2060221_2060398_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|2060412_2061015_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|2061314_2061392_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_000790905.1|2062026_2062311_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870811.1|2062354_2064319_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|2064321_2064642_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571192.1|2064638_2065280_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_001796515.1|2065367_2065658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157958947.1|2065747_2065936_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|2066024_2066381_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081332.1|2066870_2067830_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001794249.1|2067878_2068010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867362.1|2068073_2068289_-	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_000620945.1|2068453_2069005_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|2069055_2069994_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190615.1|2070175_2071537_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526673.1|2071523_2073197_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150215.1|2073183_2073987_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|2073979_2074801_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284455.1|2075038_2075368_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088778.1|2075405_2076587_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 9
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	2096370	2104843	2891536		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807816.1|2096370_2096853_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010409.1|2096839_2097964_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174055.1|2097967_2098672_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_000848351.1|2098671_2098935_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|2098936_2099608_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032750.1|2099600_2101790_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000483707.1|2101768_2103253_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000030815.1|2103245_2104274_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|2104276_2104843_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 10
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	2361164	2366352	2891536		Staphylococcus_phage(66.67%)	8	NA	NA
WP_001807853.1|2361164_2361362_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_074347689.1|2362048_2362276_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001002341.1|2362576_2362783_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_001788716.1|2363483_2363594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|2363986_2364172_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477489.1|2364682_2365099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974166.1|2365530_2366115_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_001215406.1|2366178_2366352_-	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
>prophage 11
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	2640117	2648429	2891536	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|2640117_2640903_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|2641028_2641919_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062170.1|2641928_2643275_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000683941.1|2643388_2644489_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|2644491_2645169_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|2645299_2646406_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|2646629_2648429_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 12
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	2717853	2726896	2891536	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|2717853_2718372_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595008.1|2718393_2720667_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000749801.1|2720869_2723149_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|2723423_2723684_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|2723702_2724842_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019177.1|2724864_2725890_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005766.1|2725891_2726896_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 13
NZ_LT992461	Staphylococcus aureus isolate 8_LA_272 chromosome I	2891536	2862106	2888777	2891536	tRNA	Staphylococcus_phage(94.12%)	22	NA	NA
WP_001050515.1|2862106_2868655_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
WP_000836471.1|2868978_2869290_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001807819.1|2869311_2871729_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025064.1|2872016_2873198_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|2873307_2874261_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|2874257_2874821_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|2874939_2875341_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|2875913_2876741_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|2876743_2876863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|2876974_2877976_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|2878103_2878562_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|2878574_2879756_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_000493892.1|2879766_2880399_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077346.1|2880405_2881449_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261672.1|2881929_2883432_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|2884074_2884389_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|2884388_2885681_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|2885767_2886622_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|2886897_2887122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|2887320_2887791_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_001153741.1|2887903_2888347_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030474.1|2888333_2888777_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
