The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	8250	19689	2959092	plate,holin,tail	Staphylococcus_phage(71.43%)	14	NA	NA
WP_001190533.1|8250_9075_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384460.1|9083_10667_+|tail	phage tail protein	tail	Q4ZD01	Staphylococcus_virus	99.8	3.5e-308
WP_000179864.1|10666_10957_+	hypothetical protein	NA	R4WEC3	Staphylococcus_phage	100.0	2.1e-49
WP_000429556.1|10972_12883_+	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	99.2	0.0e+00
WP_021285990.1|12882_14349_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.8	5.8e-273
WP_001166606.1|14348_14738_+	DUF2977 domain-containing protein	NA	Q4ZCZ7	Staphylococcus_virus	95.3	5.4e-61
WP_000916022.1|14730_14895_+	XkdX family protein	NA	M9QX31	Staphylococcus_phage	98.1	1.9e-23
WP_000466774.1|14940_15240_+	DUF2951 family protein	NA	M9QRV2	Staphylococcus_phage	100.0	2.6e-31
WP_000354117.1|15375_15813_+|holin	phage holin	holin	M9QTA6	Staphylococcus_phage	97.9	3.8e-71
WP_001148129.1|15793_17239_+	SH3 domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	96.9	1.7e-288
WP_000201920.1|18141_18321_+	hypothetical protein	NA	M9QYR8	Staphylococcus_phage	100.0	4.1e-24
WP_000455173.1|18342_18870_+	DUF4065 domain-containing protein	NA	M9QX37	Staphylococcus_phage	100.0	3.4e-98
WP_016187462.1|18841_19258_+	hypothetical protein	NA	M9QRV7	Staphylococcus_phage	100.0	6.4e-76
WP_000126130.1|19473_19689_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
>prophage 2
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	232528	237716	2959092		Staphylococcus_phage(66.67%)	8	NA	NA
WP_001215406.1|232528_232702_+	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
WP_000974166.1|232765_233350_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_000477489.1|233781_234198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|234708_234894_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|235286_235397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002341.1|236097_236304_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_074347689.1|236604_236832_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001807853.1|237518_237716_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
>prophage 3
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	493974	502447	2959092		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238668.1|493974_494541_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
WP_000030815.1|494543_495572_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000483707.1|495564_497049_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000032750.1|497027_499217_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000666799.1|499209_499881_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848351.1|499882_500146_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174055.1|500145_500850_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_001010409.1|500853_501978_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001807816.1|501964_502447_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 4
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	522230	546698	2959092	holin,bacteriocin,protease	Planktothrix_phage(50.0%)	27	NA	NA
WP_001088778.1|522230_523412_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284455.1|523449_523779_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|524016_524838_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150215.1|524830_525634_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526673.1|525620_527294_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190615.1|527280_528642_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|528823_529762_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620945.1|529812_530364_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867362.1|530528_530744_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_001794249.1|530807_530939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081332.1|530987_531947_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|532437_532794_+	DoxX family protein	NA	NA	NA	NA	NA
WP_157958947.1|532882_533071_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001796515.1|533160_533451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571192.1|533538_534180_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_000668623.1|534176_534497_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870811.1|534499_536464_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000790905.1|536507_536792_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_099119695.1|537426_537504_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_001033867.1|537803_538406_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|538420_538597_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668814.1|538795_539782_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|539862_540081_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|540290_540860_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414168.1|541348_542860_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021872.1|542998_544357_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_014937014.1|544373_546698_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
>prophage 5
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	601168	618691	2959092	integrase	Streptococcus_phage(100.0%)	20	616466:616481	624798:624813
WP_000420682.1|601168_601483_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|601498_601885_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|601913_603299_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|603301_603454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|603476_604682_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_001009056.1|604724_604946_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|605062_605560_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|605534_606041_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|606024_608472_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000804748.1|608474_610652_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|610648_611650_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224318.1|611646_612579_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_001814923.1|612823_612940_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691736.1|612955_614875_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_000336323.1|614993_615161_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|615220_615574_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|616078_616501_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
616466:616481	attL	TTAATTAAAAAGTTTA	NA	NA	NA	NA
WP_000857133.1|616497_616728_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|617188_617392_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|617473_618691_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
624798:624813	attR	TAAACTTTTTAATTAA	NA	NA	NA	NA
>prophage 6
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	705913	802177	2959092	portal,plate,integrase,protease,terminase,holin,capsid,tail,head	Staphylococcus_phage(88.89%)	141	769945:769963	800844:800862
WP_000757407.1|705913_706642_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
WP_000280154.1|707072_707618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021285828.1|708154_708355_-	hypothetical protein	NA	M9NUJ7	Staphylococcus_phage	100.0	4.6e-32
WP_021285829.1|708369_708564_-	hypothetical protein	NA	M9NSU5	Staphylococcus_phage	100.0	4.3e-27
WP_021285831.1|709168_710614_-	SH3 domain-containing protein	NA	M9NTD5	Staphylococcus_phage	100.0	9.7e-297
WP_021285832.1|710594_711032_-|holin	phage holin	holin	M9NRJ9	Staphylococcus_phage	100.0	1.4e-73
WP_031838222.1|711087_713682_-|plate	BppU family phage baseplate upper protein	plate	Q4ZC48	Staphylococcus_virus	56.9	3.0e-272
WP_031886698.1|713694_715569_-	glucosaminidase domain-containing protein	NA	Q4ZA83	Staphylococcus_virus	97.3	0.0e+00
WP_031838220.1|715621_716017_-	hypothetical protein	NA	A0A1W6JQP0	Staphylococcus_phage	58.8	4.9e-33
WP_031903468.1|716000_716435_-	hypothetical protein	NA	A0A1W6JQR9	Staphylococcus_phage	66.0	8.8e-52
WP_078098837.1|716473_716647_-	XkdX family protein	NA	Q4ZA85	Staphylococcus_virus	98.2	6.6e-27
WP_031838217.1|716650_717028_-	DUF2977 domain-containing protein	NA	A0A0E3T8J6	Staphylococcus_phage	99.2	1.3e-54
WP_031838216.1|717027_718851_-|plate	BppU family phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	94.1	5.5e-281
WP_031838215.1|718850_720749_-	hypothetical protein	NA	W5R996	Staphylococcus_phage	96.7	0.0e+00
WP_031903449.1|720761_722648_-|tail	phage tail protein	tail	W5RAP4	Staphylococcus_phage	99.0	0.0e+00
WP_000669789.1|723119_723299_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|723609_723870_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|723922_724273_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|724958_725408_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|726487_726979_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|727169_727925_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|727936_728191_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|728242_728350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|728402_728579_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000750406.1|728687_729461_-	staphylococcal enterotoxin type A	NA	A0EX09	Staphylococcus_phage	100.0	2.2e-146
WP_000340977.1|729881_730256_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040259.1|730311_730599_-	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_001153681.1|730645_730798_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582190.1|730787_734573_-	hypothetical protein	NA	A0EX05	Staphylococcus_phage	100.0	0.0e+00
WP_000567413.1|734588_736073_-|tail	phage tail family protein	tail	A0EX04	Staphylococcus_phage	100.0	4.5e-297
WP_001643732.1|736069_740599_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	100.0	0.0e+00
WP_001549167.1|740655_740793_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|740843_741194_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|741243_741468_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268735.1|741509_742154_-|tail	phage tail protein	tail	A0EWZ9	Staphylococcus_phage	100.0	3.8e-120
WP_000565498.1|742154_742562_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|742558_742963_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|742959_743322_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|743305_743590_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|743579_743864_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|743883_745029_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|745052_745790_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|745773_746961_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|746976_748638_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|748634_748979_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|749108_749408_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|749639_750056_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|750083_750284_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|750283_750433_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|750429_750816_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|750812_751019_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000185659.1|751055_751598_-	dUTP pyrophosphatase	NA	A0EWY2	Staphylococcus_phage	100.0	1.1e-96
WP_000028422.1|751590_751773_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	100.0	2.6e-26
WP_001065091.1|751762_752014_-	DUF1024 family protein	NA	A0EWY0	Staphylococcus_phage	100.0	1.9e-38
WP_001624242.1|752006_752174_-	hypothetical protein	NA	A0EWX9	Staphylococcus_phage	100.0	7.8e-25
WP_000131366.1|752185_752428_-	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
WP_000101274.1|752431_752800_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000338531.1|753130_753349_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	98.6	1.2e-36
WP_000148316.1|753355_754240_-	DnaD domain protein	NA	A0EWX4	Staphylococcus_phage	100.0	5.4e-141
WP_000934764.1|754269_754740_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
WP_071621397.1|754740_755358_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138472.1|755438_756359_-	recombinase RecT	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
WP_000700577.1|756360_758304_-	AAA family ATPase	NA	A0EWX0	Staphylococcus_phage	100.0	0.0e+00
WP_114667502.1|758312_758576_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	98.9	1.0e-42
WP_000291503.1|758584_758845_-	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
WP_000165375.1|758825_759152_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	100.0	1.2e-53
WP_000066017.1|759246_759408_-	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_001120197.1|759404_759725_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|759783_760416_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|760430_760571_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148855.1|760601_760799_-	hypothetical protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
WP_001148605.1|760814_761567_-	phage antirepressor KilAC domain-containing protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|761617_761947_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025874.1|761935_762151_-	DUF2829 domain-containing protein	NA	A0EWV9	Staphylococcus_phage	100.0	6.3e-35
WP_000854072.1|762166_762430_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|762426_762600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|762562_763276_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|763291_764224_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|764229_764571_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|764774_764957_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|765056_765521_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|765579_766617_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_031838212.1|767563_770533_-|terminase	terminase	terminase	W5R9L9	Staphylococcus_phage	94.5	1.8e-257
769945:769963	attL	CATTAAGTACTGCCATAAT	NA	NA	NA	NA
WP_049949322.1|770535_770877_-	hypothetical protein	NA	W5R8J4	Staphylococcus_phage	99.1	1.3e-55
WP_000141084.1|770897_771392_-	hypothetical protein	NA	A0A0H4IPX9	Staphylococcus_phage	100.0	2.5e-87
WP_000046067.1|771453_772014_-	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_031838210.1|772000_772438_-	DUF3168 domain-containing protein	NA	A0A2H4PQL6	Staphylococcus_phage	99.3	4.6e-77
WP_031838209.1|772450_772864_-	HK97 gp10 family phage protein	NA	A0A0E3XCY8	Staphylococcus_phage	97.8	8.3e-76
WP_031838208.1|772850_773186_-|head	phage head closure protein	head	A0A0H4ISR6	Staphylococcus_phage	99.1	1.1e-59
WP_031838207.1|773178_773493_-|head,tail	phage head-tail connector protein	head,tail	A0A2H4PQL2	Staphylococcus_phage	99.0	9.8e-53
WP_031838206.1|773492_773819_-	Rho termination factor N-terminal domain-containing protein	NA	Q9G000	Staphylococcus_virus	95.4	5.8e-48
WP_031838205.1|773835_774660_-|capsid	N4-gp56 family major capsid protein	capsid	Q9G001	Staphylococcus_virus	99.3	3.6e-147
WP_015967248.1|774680_775277_-	phage scaffolding protein	NA	C7F7L8	Staphylococcus_phage	100.0	3.4e-78
WP_049949321.1|775374_776355_-|capsid	minor capsid protein	capsid	A0A0E3XC69	Staphylococcus_phage	98.2	4.7e-178
WP_031886702.1|776293_777700_-|portal	phage portal protein	portal	Q4ZAA9	Staphylococcus_virus	98.1	4.9e-269
WP_031838202.1|777718_778984_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZAI3	Staphylococcus_virus	99.3	3.7e-244
WP_031838201.1|778967_779348_-	DNA-binding protein	NA	Q4ZAB1	Staphylococcus_virus	99.2	3.0e-64
WP_000286968.1|779695_780097_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000595258.1|780097_780271_-	transcriptional activator RinB	NA	A1KX88	Staphylococcus_virus	100.0	3.7e-22
WP_169538641.1|780267_780657_-	hypothetical protein	NA	M9NTB6	Staphylococcus_phage	100.0	4.7e-65
WP_000608281.1|780646_780883_-	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	98.7	1.4e-35
WP_000141180.1|780875_781079_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_021285914.1|781075_781282_-	DUF1381 domain-containing protein	NA	M9NST3	Staphylococcus_phage	100.0	1.9e-20
WP_001061842.1|781318_781825_-	dUTP diphosphatase	NA	M9NS45	Staphylococcus_phage	100.0	5.9e-92
WP_000889684.1|781839_782001_-	hypothetical protein	NA	M9NTB4	Staphylococcus_phage	100.0	4.9e-24
WP_000028424.1|782001_782175_-	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_031267622.1|782164_782416_-	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	100.0	1.1e-38
WP_000979209.1|782712_783060_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695770.1|783056_783464_-	hypothetical protein	NA	M9NST1	Staphylococcus_phage	100.0	3.1e-75
WP_021285869.1|783466_783673_-	hypothetical protein	NA	M9NS43	Staphylococcus_phage	100.0	5.1e-34
WP_078069534.1|783687_783936_-	hypothetical protein	NA	M9NTB1	Staphylococcus_phage	100.0	2.3e-41
WP_021285871.1|783935_784190_-	DUF3310 domain-containing protein	NA	M9NRI3	Staphylococcus_phage	100.0	1.3e-42
WP_021285872.1|784189_784807_-	hypothetical protein	NA	A0A0H3U4U9	Staphylococcus_phage	99.5	3.6e-83
WP_021285873.1|784807_784993_-	DUF3113 family protein	NA	M9NSS9	Staphylococcus_phage	100.0	2.4e-27
WP_021285874.1|784992_785400_-	RusA family crossover junction endodeoxyribonuclease	NA	M9NS41	Staphylococcus_phage	100.0	4.5e-74
WP_001123688.1|785409_785631_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_031794786.1|785633_785849_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	98.6	1.8e-34
WP_114667504.1|785845_787087_-	AAA family ATPase	NA	C8CGZ3	Staphylococcus_phage	99.3	1.7e-228
WP_001132243.1|787083_787440_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_001037657.1|787439_788195_-	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_021285876.1|788187_788862_-	DUF968 domain-containing protein	NA	M9NRH9	Staphylococcus_phage	100.0	3.6e-129
WP_000934783.1|788875_789304_-	single-stranded DNA-binding protein	NA	A0A2H4JHI1	uncultured_Caudovirales_phage	93.0	1.2e-53
WP_021285877.1|789303_789942_-	ERF family protein	NA	M9NSS5	Staphylococcus_phage	100.0	1.7e-115
WP_000002513.1|789941_790421_-	siphovirus Gp157 family protein	NA	D2JGK0	Staphylococcus_phage	100.0	5.3e-82
WP_000802315.1|790413_790650_-	hypothetical protein	NA	D2JGJ9	Staphylococcus_phage	100.0	2.7e-39
WP_000291075.1|790657_790918_-	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_000066011.1|791009_791171_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000455728.1|791183_791393_-	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	100.0	9.7e-33
WP_015978381.1|791417_792143_-	phage repressor protein	NA	M9NS32	Staphylococcus_phage	100.0	2.4e-131
WP_001114715.1|792181_792391_-	helix-turn-helix transcriptional regulator	NA	A0A059T617	Staphylococcus_phage	100.0	4.8e-32
WP_000455972.1|792554_792881_+	helix-turn-helix transcriptional regulator	NA	A0A059T5A2	Staphylococcus_phage	100.0	7.0e-54
WP_000521395.1|792902_793361_+	hypothetical protein	NA	B2ZYU2	Staphylococcus_phage	100.0	1.2e-83
WP_001573838.1|793381_793873_+	hypothetical protein	NA	M9NSS1	Staphylococcus_phage	100.0	5.8e-84
WP_021285878.1|793876_794392_+	hypothetical protein	NA	M9NS30	Staphylococcus_phage	100.0	1.7e-33
WP_021285879.1|794453_795503_+|integrase	site-specific integrase	integrase	M9NTA3	Staphylococcus_phage	100.0	1.3e-197
WP_001085185.1|796014_796479_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_001050055.1|796500_798873_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	8.7e-93
WP_001165970.1|798906_799647_-	carboxylesterase	NA	NA	NA	NA	NA
WP_000556760.1|799775_800009_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|800075_800534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|800872_802177_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
800844:800862	attR	ATTATGGCAGTACTTAATG	NA	NA	NA	NA
>prophage 7
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	854916	869232	2959092		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000616865.1|854916_855678_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
WP_001245567.1|855674_856631_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000876311.1|856617_857589_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_000562498.1|857958_858930_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|859049_861155_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|861117_861516_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068490.1|862317_863184_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930016.1|863203_863704_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_000193750.1|864043_865549_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_014936998.1|865620_865728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429003.1|865818_866736_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_000197271.1|867472_868015_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663034.1|868173_869232_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
>prophage 8
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	881202	888957	2959092		Pandoravirus(16.67%)	10	NA	NA
WP_001217786.1|881202_882354_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604516.1|882337_882931_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_000446724.1|883281_883950_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|883951_884371_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062968.1|884374_885088_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637685.1|885186_885771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093557.1|885986_886427_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037805.1|886767_887241_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|887215_887902_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_031913976.1|887901_888957_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 9
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	1221658	1231202	2959092	integrase	Staphylococcus_phage(33.33%)	11	1214399:1214419	1228161:1228181
1214399:1214419	attL	TATATATAATTATTCCCACTC	NA	NA	NA	NA
WP_001082128.1|1221658_1222003_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	64.3	1.2e-40
WP_031593609.1|1222673_1225046_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	3.7e-136
WP_001103957.1|1225136_1225430_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	46.1	1.7e-14
WP_031774950.1|1225430_1225655_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	58.8	7.5e-15
WP_162852058.1|1225647_1225794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031588030.1|1225840_1226101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031588042.1|1226097_1226337_-	helix-turn-helix transcriptional regulator	NA	Q38329	Lactococcus_phage	40.0	2.5e-08
WP_031588064.1|1226469_1226856_+	helix-turn-helix transcriptional regulator	NA	U3PIS7	Lactobacillus_phage	41.2	3.8e-06
WP_031588067.1|1226939_1228076_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	1.0e-75
WP_000424968.1|1228169_1229711_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
1228161:1228181	attR	TATATATAATTATTCCCACTC	NA	NA	NA	NA
WP_000264071.1|1229735_1231202_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 10
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	1295824	1345937	2959092	portal,plate,integrase,protease,terminase,holin,capsid,tail,head	Staphylococcus_phage(89.04%)	74	1297812:1297829	1344454:1344471
WP_021285991.1|1295824_1297279_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	99.6	7.5e-289
WP_000339146.1|1297290_1297593_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1297728_1298028_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
1297812:1297829	attL	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000916020.1|1298073_1298238_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1298230_1298620_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_031584731.1|1298619_1300086_-|plate	phage baseplate upper protein	plate	A0A2I6PE72	Staphylococcus_phage	99.8	3.4e-273
WP_000429556.1|1300085_1301996_-	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	99.2	0.0e+00
WP_000179864.1|1302011_1302302_-	hypothetical protein	NA	R4WEC3	Staphylococcus_phage	100.0	2.1e-49
WP_000384460.1|1302301_1303885_-|tail	phage tail protein	tail	Q4ZD01	Staphylococcus_virus	99.8	3.5e-308
WP_001190533.1|1303893_1304718_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_114667512.1|1304717_1310918_-|tail	phage tail tape measure protein	tail	U5U762	Staphylococcus_phage	98.4	0.0e+00
WP_000438833.1|1310931_1311090_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1311131_1311482_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169128.1|1311539_1311995_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1312086_1312728_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023802.1|1312762_1313158_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000050973.1|1313898_1314177_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142739.1|1314245_1315409_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
WP_000061872.1|1315420_1316194_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	100.0	9.2e-137
WP_001100664.1|1316177_1317416_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_031885215.1|1317420_1319112_-|terminase	terminase large subunit	terminase	M9QX14	Staphylococcus_phage	99.6	0.0e+00
WP_000778933.1|1319101_1319407_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160694.1|1319534_1319849_-	HNH endonuclease	NA	M9QQL5	Staphylococcus_phage	100.0	2.5e-56
WP_000528512.1|1320005_1320443_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_074370994.1|1320455_1321823_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.9e-263
WP_001794602.1|1321803_1322094_-	VRR-NUC domain-containing protein	NA	M1T308	Staphylococcus_phage	100.0	4.9e-51
WP_078099040.1|1322227_1322332_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	97.1	1.8e-11
WP_015978065.1|1322434_1322689_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	2.5e-43
WP_000265258.1|1323069_1323270_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_031838395.1|1323337_1323490_-	transcriptional regulator	NA	Q9B0E9	Staphylococcus_virus	98.0	7.6e-19
WP_001555739.1|1323489_1323876_-	hypothetical protein	NA	A0A2I6PDC1	Staphylococcus_phage	100.0	3.0e-64
WP_000483477.1|1323865_1324102_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195831.1|1324126_1324363_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_000185654.1|1324399_1324942_-	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
WP_001065023.1|1324946_1325183_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000144708.1|1325175_1325484_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
WP_000979209.1|1325480_1325828_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_031796932.1|1325824_1326226_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	99.2	4.6e-71
WP_000693987.1|1326228_1326435_-	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
WP_031796934.1|1326448_1326697_-	phage protein	NA	A0A2I6PDI0	Staphylococcus_phage	98.8	3.6e-42
WP_031838377.1|1326697_1327057_-	phage protein	NA	B2ZYW3	Staphylococcus_phage	99.2	2.2e-61
WP_031838378.1|1327057_1327243_-	DUF3113 family protein	NA	A0A0E3TAK3	Staphylococcus_phage	93.4	5.6e-24
WP_000049795.1|1327247_1327652_-	DUF1064 domain-containing protein	NA	A0A068A2B2	Staphylococcus_phage	100.0	9.6e-69
WP_001123688.1|1327661_1327883_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_031794786.1|1327885_1328101_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	98.6	1.8e-34
WP_031914162.1|1328097_1329339_-	AAA family ATPase	NA	A9CR70	Staphylococcus_phage	99.5	7.4e-229
WP_001132243.1|1329335_1329692_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_001037657.1|1329691_1330447_-	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_031775800.1|1330439_1331114_-	phi PV83 orf 19-like protein	NA	Q4ZA53	Staphylococcus_virus	96.9	1.1e-125
WP_001004506.1|1331114_1331666_-	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
WP_000934384.1|1331676_1332102_-	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
WP_000139720.1|1332101_1332725_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000815402.1|1332717_1332939_-	DUF2483 family protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
WP_031886231.1|1332948_1333209_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	98.8	1.5e-43
WP_000163429.1|1333213_1333516_-	DUF2482 family protein	NA	A0A0K1LKL3	Staphylococcus_phage	100.0	2.6e-47
WP_001285954.1|1333618_1333780_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124190.1|1333792_1334056_-	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
WP_001036302.1|1334080_1334296_-	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
WP_001128433.1|1334350_1334716_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1334684_1334930_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000642492.1|1334985_1335195_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000939498.1|1335184_1335328_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_001148544.1|1335356_1336133_-	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
WP_001121027.1|1336146_1336383_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_000333630.1|1336534_1336849_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_000525004.1|1336861_1337323_+	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000825950.1|1337340_1337925_+	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
WP_074370993.1|1338154_1338301_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	1.7e-15
WP_000191466.1|1338297_1338912_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_031585161.1|1339037_1340243_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	99.8	3.8e-222
WP_014532489.1|1340285_1342313_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	95.3	2.7e-111
WP_001825329.1|1342305_1343235_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987760.1|1343479_1345231_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.3	1.3e-21
1344454:1344471	attR	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000064078.1|1345211_1345937_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 11
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	1401059	1409371	2959092	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1401059_1401845_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1401970_1402861_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062170.1|1402870_1404217_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000683941.1|1404330_1405431_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|1405433_1406111_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1406241_1407348_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|1407571_1409371_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 12
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	1478850	1487893	2959092	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1478850_1479369_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595008.1|1479390_1481664_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000749801.1|1481866_1484146_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1484420_1484681_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1484699_1485839_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019177.1|1485861_1486887_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005766.1|1486888_1487893_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 13
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	1611628	1659474	2959092	tRNA,protease,transposase	Staphylococcus_phage(91.89%)	47	NA	NA
WP_031913978.1|1611628_1618177_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
WP_000836471.1|1618500_1618812_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_001807819.1|1618833_1621251_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025064.1|1621538_1622720_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1622829_1623783_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|1623779_1624343_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|1624461_1624863_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1625435_1626263_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1626265_1626385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1626496_1627498_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|1627625_1628084_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|1628096_1629278_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_000493892.1|1629288_1629921_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077346.1|1629927_1630971_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261672.1|1631451_1632954_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|1633596_1633911_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|1633910_1635203_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|1635289_1636144_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1636419_1636644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|1636842_1637313_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_001153741.1|1637425_1637869_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030474.1|1637855_1638299_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001168915.1|1638596_1639232_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492903.1|1639398_1640019_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1640581_1641295_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1641553_1641856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|1642110_1642476_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|1642472_1642826_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|1643075_1643909_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|1644120_1645029_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|1645153_1646347_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|1646718_1648311_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|1648607_1649354_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|1649358_1649832_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1649897_1650155_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778553.1|1650151_1651153_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|1651157_1652636_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|1652794_1653250_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|1653552_1654215_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|1654295_1655291_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|1655366_1655993_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|1656033_1656378_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|1656475_1657048_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|1657245_1657803_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|1658173_1658350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|1658360_1658744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|1659192_1659474_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
>prophage 14
NZ_LT992462	Staphylococcus aureus isolate 5_3949 chromosome I	2959092	2928138	2957078	2959092	portal,integrase,terminase,capsid,head,tail,protease	Staphylococcus_phage(88.0%)	51	2915905:2915920	2942649:2942664
2915905:2915920	attL	TGGGAAATGATTAAAC	NA	NA	NA	NA
WP_031795352.1|2928138_2929344_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.0	1.6e-220
WP_000191466.1|2929470_2930085_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_001013104.1|2930081_2930228_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_031886768.1|2930457_2931042_-	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	97.9	1.1e-65
WP_029549401.1|2931098_2931728_-	LexA family transcriptional regulator	NA	Q4ZB06	Staphylococcus_virus	99.0	6.4e-112
WP_015978369.1|2931881_2932109_+	helix-turn-helix transcriptional regulator	NA	Q4ZB05	Staphylococcus_virus	100.0	1.6e-36
WP_031838392.1|2932131_2932908_+	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	89.1	1.5e-123
WP_000939498.1|2932936_2933080_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|2933069_2933279_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_001025401.1|2933334_2933580_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001097552.1|2933703_2933919_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001124160.1|2933943_2934207_+	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001285954.1|2934219_2934381_+	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_031914478.1|2934459_2934783_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	96.3	2.5e-51
WP_031914479.1|2934797_2935160_+	hypothetical protein	NA	A7TWG3	Staphylococcus_phage	98.3	1.9e-55
WP_031795549.1|2935156_2936323_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	99.0	1.7e-219
WP_000645042.1|2936348_2936906_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_078100145.1|2936974_2938927_+	DNA polymerase	NA	Q4ZCP5	Staphylococcus_virus	99.1	0.0e+00
WP_031914481.1|2938939_2939125_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	96.7	1.3e-25
WP_000113974.1|2939124_2939526_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022727.1|2939525_2939780_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	1.6e-42
WP_078100144.1|2939779_2940028_+	hypothetical protein	NA	Q8SDR2	Staphylococcus_virus	97.6	2.0e-40
WP_000693989.1|2940041_2940248_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_000695771.1|2940250_2940658_+	hypothetical protein	NA	M9NST1	Staphylococcus_phage	98.5	2.6e-74
WP_000983950.1|2940654_2940849_+	hypothetical protein	NA	A0A0U2A067	Staphylococcus_phage	96.8	1.4e-25
WP_000982714.1|2940845_2941283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105602.1|2941279_2941645_+	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	97.3	7.4e-52
WP_031795590.1|2941637_2941886_+	DUF1024 family protein	NA	A0A0E3T8I2	Staphylococcus_phage	97.6	2.0e-37
WP_000185680.1|2941878_2942415_+	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_031795553.1|2942451_2942658_+	DUF1381 domain-containing protein	NA	A0A2I6PDB6	Staphylococcus_phage	95.6	8.4e-29
WP_000595213.1|2942654_2942807_+	transcriptional activator RinB	NA	B7T0I1	Staphylococcus_virus	98.0	1.2e-19
2942649:2942664	attR	TGGGAAATGATTAAAC	NA	NA	NA	NA
WP_031794940.1|2942874_2943075_+	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	98.5	3.8e-26
WP_031914485.1|2943126_2945574_+	virulence-associated E family protein	NA	Q4ZCN2	Staphylococcus_virus	98.7	0.0e+00
WP_015978074.1|2945676_2945781_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_000665203.1|2945914_2946205_+	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_015986201.1|2946185_2947553_+	DEAD/DEAH box helicase	NA	A7TWI6	Staphylococcus_phage	100.0	1.2e-264
WP_015986202.1|2947565_2948003_+	hypothetical protein	NA	A7TWI7	Staphylococcus_phage	100.0	6.1e-77
WP_031867669.1|2948159_2948474_+	HNH endonuclease	NA	A0A2I6PF37	Staphylococcus_phage	98.1	4.2e-56
WP_000778933.1|2948600_2948906_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000153555.1|2948895_2950587_+|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_001100669.1|2950591_2951830_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_000061872.1|2951813_2952587_+|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	100.0	9.2e-137
WP_001142739.1|2952598_2953762_+|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
WP_000050973.1|2953830_2954109_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395501.1|2954120_2954453_+	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
WP_000110020.1|2954449_2954851_+	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_001023802.1|2954851_2955247_+	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000807536.1|2955281_2955923_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169128.1|2956014_2956470_+	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000589167.1|2956527_2956878_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|2956919_2957078_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
