assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900324225.1_7_4623	NZ_LT992458	Staphylococcus aureus isolate 7_4623 chromosome I	1	850462-850595	1	PILER-CR	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA,NA|103aa|down_1|NZ_LT992458.1_855729_856038_-,NA|89aa|down_2|NZ_LT992458.1_856181_856448_-	NA|388aa|up_9|NZ_LT992458.1_834776_835940_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|204aa|up_8|NZ_LT992458.1_836037_836649_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_7|NZ_LT992458.1_837195_838473_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_6|NZ_LT992458.1_839384_841208_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_5|NZ_LT992458.1_841346_841763_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_4|NZ_LT992458.1_841993_842686_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|263aa|up_3|NZ_LT992458.1_842825_843614_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_2|NZ_LT992458.1_843770_844448_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_1|NZ_LT992458.1_844472_846026_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_0|NZ_LT992458.1_846142_847501_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|289aa|down_0|NZ_LT992458.1_854737_855604_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992458.1_855729_856038_-	NA	NA|89aa|down_2|NZ_LT992458.1_856181_856448_-	NA	NA|584aa|down_3|NZ_LT992458.1_856731_858483_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992458.1_858558_859752_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992458.1_859847_860777_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992458.1_861019_861793_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992458.1_861904_862669_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992458.1_862916_863702_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992458.1_863698_865054_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324225.1_7_4623	NZ_LT992458	Staphylococcus aureus isolate 7_4623 chromosome I	2	854006-854139	2	PILER-CR	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA,NA|103aa|down_1|NZ_LT992458.1_855729_856038_-,NA|89aa|down_2|NZ_LT992458.1_856181_856448_-	NA|204aa|up_9|NZ_LT992458.1_836037_836649_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_LT992458.1_837195_838473_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_LT992458.1_839384_841208_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_LT992458.1_841346_841763_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_LT992458.1_841993_842686_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|263aa|up_4|NZ_LT992458.1_842825_843614_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_3|NZ_LT992458.1_843770_844448_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_LT992458.1_844472_846026_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_LT992458.1_846142_847501_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1018aa|up_0|NZ_LT992458.1_847969_851023_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_LT992458.1_854737_855604_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_LT992458.1_855729_856038_-	NA	NA|89aa|down_2|NZ_LT992458.1_856181_856448_-	NA	NA|584aa|down_3|NZ_LT992458.1_856731_858483_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_LT992458.1_858558_859752_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_LT992458.1_859847_860777_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_LT992458.1_861019_861793_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_LT992458.1_861904_862669_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_LT992458.1_862916_863702_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_LT992458.1_863698_865054_+	cd00519, Lipase_3, Lipase (class 3)
GCF_900324225.1_7_4623	NZ_LT992458	Staphylococcus aureus isolate 7_4623 chromosome I	3	878603-878697	1	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	TTGCTTCGCAACAACTGCATAAGAGCCT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|105aa|up_8|NZ_LT992458.1_870444_870759_-,NA|121aa|up_0|NZ_LT992458.1_877571_877934_+,NA|249aa|down_9|NZ_LT992458.1_888364_889111_-	NA|140aa|up_9|NZ_LT992458.1_868148_868568_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|105aa|up_8|NZ_LT992458.1_870444_870759_-	NA	NA|403aa|up_7|NZ_LT992458.1_870764_871973_-	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|128aa|up_6|NZ_LT992458.1_872039_872423_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|up_5|NZ_LT992458.1_872877_873288_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|133aa|up_4|NZ_LT992458.1_873314_873713_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|141aa|up_3|NZ_LT992458.1_874184_874607_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|513aa|up_2|NZ_LT992458.1_874718_876257_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|273aa|up_1|NZ_LT992458.1_876490_877309_+	PRK08589, PRK08589, SDR family oxidoreductase	NA|121aa|up_0|NZ_LT992458.1_877571_877934_+	NA	NA|274aa|down_0|NZ_LT992458.1_878882_879704_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|273aa|down_1|NZ_LT992458.1_879714_880533_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|434aa|down_2|NZ_LT992458.1_880525_881827_+	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|533aa|down_3|NZ_LT992458.1_881969_883568_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|312aa|down_4|NZ_LT992458.1_883580_884516_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_5|NZ_LT992458.1_884512_885382_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_6|NZ_LT992458.1_885378_886194_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|down_7|NZ_LT992458.1_886186_886936_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|398aa|down_8|NZ_LT992458.1_886947_888141_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|249aa|down_9|NZ_LT992458.1_888364_889111_-	NA
GCF_900324225.1_7_4623	NZ_LT992458	Staphylococcus aureus isolate 7_4623 chromosome I	4	922950-923028	2	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	1	922973-923005	NZ_LT992458.1_299232-299200	NA	1	1	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|220aa|up_3|NZ_LT992458.1_919874_920534_-,NA|36aa|up_0|NZ_LT992458.1_922522_922630_+,NA|56aa|down_2|NZ_LT992458.1_927085_927253_+	NA|693aa|up_9|NZ_LT992458.1_912330_914409_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_LT992458.1_914546_915956_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_LT992458.1_916241_917048_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_LT992458.1_917110_917767_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_LT992458.1_917879_918353_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_LT992458.1_918475_919687_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_LT992458.1_919874_920534_-	NA	NA|381aa|up_2|NZ_LT992458.1_920593_921736_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_LT992458.1_922002_922389_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_LT992458.1_922522_922630_+	NA	NA|588aa|down_0|NZ_LT992458.1_923333_925097_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_LT992458.1_925121_926855_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_LT992458.1_927085_927253_+	NA	NA|229aa|down_3|NZ_LT992458.1_927307_927994_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_LT992458.1_927971_929330_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_LT992458.1_929331_930339_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_LT992458.1_930316_931432_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_LT992458.1_931442_932135_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_LT992458.1_932145_932613_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_LT992458.1_932664_933642_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_900324225.1_7_4623	NZ_LT992458	Staphylococcus aureus isolate 7_4623 chromosome I	5	1218685-1218835	3	CRISPRCasFinder	no	TnsE_C,csa3	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Type I-A	TGCATAAGAGCCCCTTACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|31aa|up_2|NZ_LT992458.1_1216884_1216977_-,NA|53aa|up_1|NZ_LT992458.1_1217412_1217571_-,NA|35aa|up_0|NZ_LT992458.1_1218250_1218355_+,NA|364aa|down_0|NZ_LT992458.1_1218852_1219944_-,NA|77aa|down_5|NZ_LT992458.1_1223731_1223962_+	TnsE_C|135aa|up_9|NZ_LT992458.1_1210645_1211050_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|97aa|up_8|NZ_LT992458.1_1211174_1211465_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|490aa|up_7|NZ_LT992458.1_1211524_1212994_+	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|345aa|up_6|NZ_LT992458.1_1213087_1214122_+	pfam13676, TIR_2, TIR domain	NA|203aa|up_5|NZ_LT992458.1_1214149_1214758_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|261aa|up_4|NZ_LT992458.1_1215047_1215830_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_LT992458.1_1215897_1216755_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_LT992458.1_1216884_1216977_-	NA	NA|53aa|up_1|NZ_LT992458.1_1217412_1217571_-	NA	NA|35aa|up_0|NZ_LT992458.1_1218250_1218355_+	NA	NA|364aa|down_0|NZ_LT992458.1_1218852_1219944_-	NA	NA|327aa|down_1|NZ_LT992458.1_1220209_1221190_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_LT992458.1_1221191_1221512_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_LT992458.1_1221663_1222329_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_LT992458.1_1222762_1223701_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_LT992458.1_1223731_1223962_+	NA	NA|458aa|down_6|NZ_LT992458.1_1224633_1226007_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_LT992458.1_1226464_1226878_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_LT992458.1_1227077_1227521_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_LT992458.1_1227641_1228352_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_900324225.1_7_4623	NZ_LT992458	Staphylococcus aureus isolate 7_4623 chromosome I	6	1287611-1287823	4	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	47	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|87aa|up_9|NZ_LT992458.1_1279135_1279396_-,NA|101aa|up_6|NZ_LT992458.1_1281782_1282085_-,NA|95aa|up_4|NZ_LT992458.1_1282569_1282854_-,NA|107aa|up_0|NZ_LT992458.1_1287256_1287577_-,NA|46aa|down_4|NZ_LT992458.1_1290823_1290961_+	NA|87aa|up_9|NZ_LT992458.1_1279135_1279396_-	NA	NA|352aa|up_8|NZ_LT992458.1_1279400_1280456_-	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|364aa|up_7|NZ_LT992458.1_1280516_1281608_-	pfam02486, Rep_trans, Replication initiation factor	NA|101aa|up_6|NZ_LT992458.1_1281782_1282085_-	NA	NA|107aa|up_5|NZ_LT992458.1_1282098_1282419_-	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|95aa|up_4|NZ_LT992458.1_1282569_1282854_-	NA	NA|264aa|up_3|NZ_LT992458.1_1283222_1284014_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|214aa|up_2|NZ_LT992458.1_1284015_1284657_+	PRK00043, thiE, thiamine phosphate synthase	NA|291aa|up_1|NZ_LT992458.1_1284742_1285615_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|107aa|up_0|NZ_LT992458.1_1287256_1287577_-	NA	NA|216aa|down_0|NZ_LT992458.1_1287856_1288504_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|495aa|down_1|NZ_LT992458.1_1288531_1290016_-	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|98aa|down_2|NZ_LT992458.1_1290181_1290475_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|70aa|down_3|NZ_LT992458.1_1290486_1290696_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|46aa|down_4|NZ_LT992458.1_1290823_1290961_+	NA	NA|401aa|down_5|NZ_LT992458.1_1291224_1292427_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|357aa|down_6|NZ_LT992458.1_1292744_1293815_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|452aa|down_7|NZ_LT992458.1_1293829_1295185_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|507aa|down_8|NZ_LT992458.1_1295700_1297221_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|232aa|down_9|NZ_LT992458.1_1297573_1298269_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_900324225.1_7_4623	NZ_LT992458	Staphylococcus aureus isolate 7_4623 chromosome I	7	1661210-1661292	5	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	GTAAGCTGACTTTTTCGTCAGCTTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA,NA	NA|383aa|up_9|NZ_LT992458.1_1650733_1651882_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|408aa|up_8|NZ_LT992458.1_1651881_1653105_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|257aa|up_7|NZ_LT992458.1_1653148_1653919_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|165aa|up_6|NZ_LT992458.1_1654016_1654511_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_5|NZ_LT992458.1_1654633_1655581_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_4|NZ_LT992458.1_1655668_1656871_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_3|NZ_LT992458.1_1657117_1657618_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_2|NZ_LT992458.1_1657758_1658877_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|352aa|up_1|NZ_LT992458.1_1659192_1660248_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_0|NZ_LT992458.1_1660422_1661112_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|down_0|NZ_LT992458.1_1661617_1662031_-	pfam00582, Usp, Universal stress protein family	NA|433aa|down_1|NZ_LT992458.1_1662235_1663534_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_2|NZ_LT992458.1_1663903_1664845_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_3|NZ_LT992458.1_1664865_1668063_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_4|NZ_LT992458.1_1668511_1669741_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_5|NZ_LT992458.1_1669935_1670793_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_6|NZ_LT992458.1_1670792_1671737_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_7|NZ_LT992458.1_1672005_1672974_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_8|NZ_LT992458.1_1672995_1674753_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_9|NZ_LT992458.1_1675096_1676458_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
GCF_900324225.1_7_4623	NZ_LT992458	Staphylococcus aureus isolate 7_4623 chromosome I	8	2545543-2545623	6	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	GGGAGTGGGAGAGAAATGATAAAGA	25	1	1	2545568-2545598	NZ_LT992458.1_2600552-2600522	NA	1	1	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|105aa|up_7|NZ_LT992458.1_2537621_2537936_+,NA	NA|356aa|up_9|NZ_LT992458.1_2535131_2536199_-	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|347aa|up_8|NZ_LT992458.1_2536212_2537253_-	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|105aa|up_7|NZ_LT992458.1_2537621_2537936_+	NA	NA|466aa|up_6|NZ_LT992458.1_2538267_2539665_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|155aa|up_5|NZ_LT992458.1_2539815_2540280_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|417aa|up_4|NZ_LT992458.1_2540269_2541520_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_3|NZ_LT992458.1_2541625_2542933_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_2|NZ_LT992458.1_2543031_2543793_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_1|NZ_LT992458.1_2544120_2544972_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_0|NZ_LT992458.1_2545205_2545400_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|down_0|NZ_LT992458.1_2546207_2547029_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|down_1|NZ_LT992458.1_2547046_2547742_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|down_2|NZ_LT992458.1_2547734_2548760_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|down_3|NZ_LT992458.1_2549009_2549306_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|down_4|NZ_LT992458.1_2549298_2549685_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_5|NZ_LT992458.1_2550386_2551265_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_6|NZ_LT992458.1_2551444_2551825_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_7|NZ_LT992458.1_2551982_2552339_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_8|NZ_LT992458.1_2552482_2552803_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_9|NZ_LT992458.1_2552952_2553492_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA
GCF_900324225.1_7_4623	NZ_LT992458	Staphylococcus aureus isolate 7_4623 chromosome I	9	2757153-2757261	7	CRISPRCasFinder	no		cas3,csa3,WYL,TnsE_C,DEDDh,DinG	Orphan	TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,TnsE_C,DEDDh,DinG	NA|239aa|up_5|NZ_LT992458.1_2752034_2752751_-,NA|169aa|up_4|NZ_LT992458.1_2752912_2753419_-,NA	NA|75aa|up_9|NZ_LT992458.1_2748157_2748382_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_LT992458.1_2748574_2749504_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_LT992458.1_2750451_2750826_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_LT992458.1_2751077_2751866_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_LT992458.1_2752034_2752751_-	NA	NA|169aa|up_4|NZ_LT992458.1_2752912_2753419_-	NA	NA|267aa|up_3|NZ_LT992458.1_2753554_2754355_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_LT992458.1_2754338_2755058_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_LT992458.1_2755112_2756063_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_LT992458.1_2756213_2757101_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_LT992458.1_2757430_2758066_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_LT992458.1_2758550_2760212_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_LT992458.1_2760208_2760625_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_LT992458.1_2760900_2761911_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_LT992458.1_2762409_2762931_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_LT992458.1_2762958_2764254_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_LT992458.1_2764293_2764770_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_LT992458.1_2764939_2765476_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_LT992458.1_2765921_2766860_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_LT992458.1_2767129_2767756_-	pfam04276, DUF443, Protein of unknown function (DUF443)
