The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT996890	Staphylococcus aureus isolate 24117-SCV chromosome I	2730984	398570	407043	2730984		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238675.1|398570_399137_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	7.2e-30
WP_000030811.1|399139_400168_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000483713.1|400160_401645_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032733.1|401623_403813_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	2.7e-141
WP_000666806.1|403805_404477_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|404478_404742_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174044.1|404741_405446_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	8.1e-47
WP_001010414.1|405449_406574_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|406560_407043_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 2
NZ_LT996890	Staphylococcus aureus isolate 24117-SCV chromosome I	2730984	427215	481177	2730984	transposase,bacteriocin,protease	Streptococcus_phage(28.57%)	52	NA	NA
WP_001089097.1|427215_428397_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|428434_428764_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|429001_429823_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150223.1|429815_430619_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526685.1|430605_432279_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_172460312.1|432265_433627_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|433808_434747_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620949.1|434798_435350_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867357.1|435514_435730_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_020978112.1|435793_435925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081344.1|435970_436930_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|437417_437774_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719184.1|437862_439344_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410720.1|439349_439637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072361064.1|439915_440206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|440293_440935_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_000668627.1|440931_441252_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870832.1|441254_443219_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001797239.1|443262_443535_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_031763719.1|443544_443646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033865.1|444561_445164_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|445178_445355_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668818.1|445553_446540_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|446620_446839_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|447048_447618_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414185.1|448104_449616_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021865.1|449754_451113_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000455278.1|451129_453454_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|453672_454476_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049951.1|454777_456340_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_001795833.1|456339_456600_-	YueH family protein	NA	NA	NA	NA	NA
WP_000340119.1|456580_458065_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_000258650.1|458497_459673_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001154224.1|459650_460841_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600387.1|460953_461463_-	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_000889191.1|461656_462415_-	esterase family protein	NA	NA	NA	NA	NA
WP_000570700.1|462559_464128_-	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000933105.1|464468_465554_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000933195.1|465749_466520_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000395152.1|466797_468642_-	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_115657817.1|468651_470034_-	magnesium transporter	NA	NA	NA	NA	NA
WP_000669923.1|470054_470909_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_001270834.1|470905_471715_-	NAD kinase	NA	NA	NA	NA	NA
WP_001077683.1|471731_472367_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001242102.1|472383_472731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224619.1|472916_473510_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_000214069.1|473613_473979_+	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000896697.1|474001_474808_+	DsbA family protein	NA	NA	NA	NA	NA
WP_000082725.1|475267_477076_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000959289.1|477123_478110_-	competence protein CoiA	NA	NA	NA	NA	NA
WP_001217728.1|478230_478950_-	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000277718.1|479530_481177_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	97.4	7.2e-288
>prophage 3
NZ_LT996890	Staphylococcus aureus isolate 24117-SCV chromosome I	2730984	659321	673996	2730984		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|659321_660083_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245577.1|660079_661036_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|661022_661994_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|662032_662188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|662589_663561_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|663678_665784_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|665746_666145_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|666945_667812_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|667831_668332_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|668672_670178_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031835073.1|670255_670357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|670447_671365_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197275.1|672044_672587_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663026.1|672937_673996_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
>prophage 4
NZ_LT996890	Staphylococcus aureus isolate 24117-SCV chromosome I	2730984	685967	693787	2730984		Pandoravirus(16.67%)	10	NA	NA
WP_049307813.1|685967_687119_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	1.6e-23
WP_000604515.1|687102_687696_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_000446724.1|688046_688715_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|688716_689136_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|689139_689853_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|689951_690536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093561.1|690815_691256_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|691597_692071_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|692045_692732_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|692731_693787_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 5
NZ_LT996890	Staphylococcus aureus isolate 24117-SCV chromosome I	2730984	2129460	2135139	2730984		Staphylococcus_phage(100.0%)	6	NA	NA
WP_000791411.1|2129460_2130516_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595392.1|2130537_2131554_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000727643.1|2132853_2133303_-	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000702262.1|2133985_2134336_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|2134388_2134649_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|2134959_2135139_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 6
NZ_LT996890	Staphylococcus aureus isolate 24117-SCV chromosome I	2730984	2229194	2275955	2730984	tRNA,protease	Staphylococcus_phage(86.67%)	45	NA	NA
WP_000379985.1|2229194_2230322_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|2230326_2230797_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|2230954_2231554_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|2231578_2231731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|2232857_2233253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|2233448_2234834_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|2235294_2236116_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437961.1|2236278_2237391_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|2237412_2238036_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|2238391_2238856_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992516.1|2239034_2240159_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|2240227_2240572_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|2241064_2241163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|2241453_2242650_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584628.1|2242639_2245576_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244171.1|2245572_2246514_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|2246634_2247597_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|2247801_2248359_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|2249091_2249457_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004988.1|2249598_2250021_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|2250154_2250895_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000551840.1|2250887_2252111_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737978.1|2252234_2252738_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001790154.1|2252900_2253011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|2253000_2254038_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|2254095_2255019_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167554.1|2255042_2256443_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|2256764_2257319_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000206349.1|2259702_2260491_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.0e-138
WP_001086053.1|2260503_2260959_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
WP_000473596.1|2261852_2262788_+	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|2262789_2263773_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543848.1|2264142_2264934_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550254.1|2264938_2265412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092783.1|2266357_2266927_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
WP_025174851.1|2267890_2268598_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.7	2.4e-123
WP_001039455.1|2268722_2269445_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.2	1.2e-130
WP_001038866.1|2269502_2270222_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	3.5e-130
WP_001038723.1|2270342_2271062_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.9	4.3e-128
WP_103150108.1|2271010_2271118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038760.1|2271219_2271936_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.6	3.2e-131
WP_001038693.1|2272086_2272806_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	1.2e-130
WP_031835054.1|2272872_2273007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000028658.1|2273170_2274727_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	3.4e-287
WP_000072556.1|2274719_2275955_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.2	6.4e-47
>prophage 7
NZ_LT996890	Staphylococcus aureus isolate 24117-SCV chromosome I	2730984	2285146	2321628	2730984	protease	Staphylococcus_phage(93.94%)	40	NA	NA
WP_000864136.1|2285146_2285704_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.8	3.7e-79
WP_000414214.1|2285901_2286474_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000627537.1|2286574_2286916_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000669027.1|2286956_2287583_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000070655.1|2287658_2288654_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_001795535.1|2288734_2289385_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_072414246.1|2289687_2290143_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.5e-78
WP_000348365.1|2290301_2291780_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_000778538.1|2291784_2292786_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	9.0e-185
WP_000718107.1|2292782_2293040_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672015.1|2293105_2293579_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_001834463.1|2293583_2294330_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000109906.1|2294707_2296300_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|2296671_2297865_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366155.1|2297989_2298898_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
WP_000453317.1|2299109_2299943_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_000623471.1|2302040_2302394_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200542.1|2302390_2302756_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|2303011_2303314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|2303573_2304287_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|2304726_2305362_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|2305657_2306101_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153745.1|2306087_2306531_-	competence protein ComK	NA	NA	NA	NA	NA
WP_115657842.1|2306643_2307114_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	3.3e-81
WP_000384171.1|2307312_2307537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|2307812_2308667_+	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163236.1|2308961_2309357_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	3.1e-72
WP_000989121.1|2309374_2310667_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|2310666_2310981_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261679.1|2311503_2313006_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000077344.1|2313486_2314530_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_000493886.1|2314536_2315169_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_001175484.1|2315179_2316361_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.5e-226
WP_001008551.1|2316373_2316838_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196360.1|2316959_2317961_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	7.7e-184
WP_001790712.1|2318072_2318192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|2318194_2319022_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|2319593_2319995_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|2320114_2320678_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|2320674_2321628_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
>prophage 8
NZ_LT996890	Staphylococcus aureus isolate 24117-SCV chromosome I	2730984	2457357	2466400	2730984	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005769.1|2457357_2458362_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|2458363_2459389_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|2459411_2460551_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|2460569_2460830_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749789.1|2461104_2463384_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|2463586_2465860_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|2465881_2466400_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 9
NZ_LT996890	Staphylococcus aureus isolate 24117-SCV chromosome I	2730984	2534254	2542584	2730984	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217252.1|2534254_2536072_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
WP_001283055.1|2536295_2537402_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624583.1|2537532_2538210_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683933.1|2538212_2539313_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062183.1|2539426_2540773_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.8e-55
WP_000924220.1|2540782_2541673_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|2541798_2542584_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 10
NZ_LT996890	Staphylococcus aureus isolate 24117-SCV chromosome I	2730984	2601405	2687921	2730984	holin,terminase,head,tail,tRNA,portal,plate,integrase,capsid,protease	Staphylococcus_phage(81.01%)	104	2602872:2602889	2649318:2649335
WP_000064078.1|2601405_2602131_+	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987769.1|2602111_2603863_+	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
2602872:2602889	attL	CTAAAAATATTAGAGACA	NA	NA	NA	NA
WP_001641538.1|2604107_2605016_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001793477.1|2605027_2607055_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	96.2	1.1e-112
WP_000264751.1|2607097_2608303_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_000191464.1|2608428_2609043_+	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_001795334.1|2609039_2609186_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000449655.1|2609274_2609670_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_115657847.1|2609698_2610133_-	hypothetical protein	NA	A0A2K9VBS2	Staphylococcus_phage	93.8	3.6e-21
WP_000525004.1|2610150_2610612_-	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000333630.1|2610624_2610939_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_001121027.1|2611090_2611327_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_001148544.1|2611340_2612117_+	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
WP_000939498.1|2612145_2612289_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|2612278_2612488_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_001025401.1|2612543_2612789_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|2612757_2613123_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001097552.1|2613177_2613393_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001124198.1|2613419_2613683_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001285948.1|2613695_2613857_+	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_000174994.1|2613935_2614259_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_000985976.1|2614273_2614636_+	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_000762545.1|2614632_2615799_+	DUF2800 domain-containing protein	NA	A7TWG4	Staphylococcus_phage	99.7	7.0e-221
WP_000645042.1|2615824_2616382_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_001802096.1|2616449_2618402_+	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
WP_001164629.1|2618414_2618600_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|2618599_2619001_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022728.1|2619000_2619258_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000235324.1|2619260_2619461_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000132194.1|2619475_2619718_+	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_031865245.1|2619732_2619987_+	DUF1024 family protein	NA	A0A2I6PE79	Staphylococcus_phage	100.0	5.0e-39
WP_031865246.1|2619973_2620144_+	hypothetical protein	NA	A0A2I6PEB2	Staphylococcus_phage	100.0	1.6e-22
WP_031865247.1|2620136_2620664_+	dUTP pyrophosphatase	NA	A0A2I6PE85	Staphylococcus_phage	100.0	7.8e-95
WP_001209217.1|2620700_2620874_+	hypothetical protein	NA	A0A2I6PEA8	Staphylococcus_phage	100.0	3.6e-25
WP_033856914.1|2620890_2621178_+	DUF1381 domain-containing protein	NA	Q4ZBK2	Staphylococcus_phage	94.7	2.6e-44
WP_000608281.1|2621170_2621407_+	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	98.7	1.4e-35
WP_001568228.1|2621396_2621786_+	hypothetical protein	NA	M9QX07	Staphylococcus_phage	100.0	2.8e-65
WP_031764091.1|2621782_2621935_+	transcriptional regulator	NA	A0A2I6PE89	Staphylococcus_phage	100.0	2.6e-19
WP_031910532.1|2622002_2622203_+	DUF1514 family protein	NA	A0A2I6PE96	Staphylococcus_phage	100.0	2.9e-26
WP_031809042.1|2622254_2624702_+	virulence-associated E family protein	NA	Q4ZCG0	Staphylococcus_virus	99.3	0.0e+00
WP_001801650.1|2624810_2624909_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000665205.1|2625042_2625333_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_115657848.1|2625313_2626681_+	DEAD/DEAH box helicase	NA	Q4ZCM9	Staphylococcus_virus	97.4	1.7e-258
WP_000513704.1|2626693_2627131_+	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	100.0	6.1e-77
WP_000166257.1|2627291_2627612_+	HNH endonuclease	NA	A0A2K9VBV6	Staphylococcus_phage	86.8	4.6e-50
WP_020444673.1|2627737_2628043_+|terminase	P27 family phage terminase small subunit	terminase	U5U414	Staphylococcus_phage	99.0	8.3e-49
WP_031765982.1|2628032_2629724_+|terminase	terminase large subunit	terminase	A0A2K9VBQ1	Staphylococcus_phage	99.6	0.0e+00
WP_115657849.1|2629728_2630967_+|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	98.5	3.2e-232
WP_031927476.1|2630950_2631724_+|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	96.9	4.7e-133
WP_115657850.1|2631735_2632899_+|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	99.5	4.7e-217
WP_000050975.1|2632967_2633246_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PE36	Staphylococcus_phage	100.0	2.1e-46
WP_000395501.1|2633257_2633590_+	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
WP_000110020.1|2633586_2633988_+	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_001023802.1|2633988_2634384_+	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000807541.1|2634418_2635060_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	99.1	5.0e-120
WP_000169127.1|2635151_2635607_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|2635664_2636015_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|2636056_2636215_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003424.1|2636228_2642429_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	100.0	0.0e+00
WP_001190533.1|2642428_2643253_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|2643261_2644845_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|2644844_2645135_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|2645150_2647061_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067127.1|2647060_2648527_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_001166599.1|2648526_2648916_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|2648908_2649073_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|2649118_2649418_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
2649318:2649335	attR	CTAAAAATATTAGAGACA	NA	NA	NA	NA
WP_000339146.1|2649553_2649856_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000909213.1|2649866_2651321_+	N-acetylmuramoyl-L-alanine amidase	NA	U5U7D2	Staphylococcus_phage	100.0	2.6e-289
WP_000126130.1|2652043_2652259_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
WP_000476867.1|2652349_2653255_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476338.1|2653312_2654230_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476341.1|2654286_2655219_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001186912.1|2655620_2656166_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151997.1|2656271_2656520_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163805.1|2656627_2657581_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000902122.1|2657570_2658950_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	3.8e-56
WP_000069314.1|2659102_2660557_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_031824588.1|2660681_2660798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001174260.1|2660958_2661945_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000681769.1|2662059_2663028_-	asparaginase	NA	NA	NA	NA	NA
WP_000644391.1|2663104_2663764_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000133950.1|2664461_2665637_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000165533.1|2665858_2667169_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000161746.1|2667185_2668184_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001043863.1|2668354_2668627_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|2669057_2669630_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|2669632_2670358_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001096479.1|2670359_2671319_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|2671410_2671860_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|2672068_2672269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269929.1|2672654_2673821_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000776326.1|2673846_2674911_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000245900.1|2674920_2676219_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000389524.1|2676225_2677470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000005213.1|2677483_2678059_+	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000152734.1|2678048_2678636_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_001827022.1|2678707_2679388_+	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000839931.1|2679724_2680042_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_115657851.1|2680282_2681425_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000361532.1|2681429_2682632_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.0	1.2e-34
WP_115657852.1|2682618_2683590_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525074.1|2683613_2686307_+	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858791.1|2686628_2687921_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
