assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900234395.1_JOUY54_assembly_v1	NZ_LT960790	Lactobacillus sakei strain J54 chromosome 1	1	1149842-1151790	1,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no	csn2,cas2,cas9	csa3,cas3,DEDDh,DinG,csn2,cas2,cas9	Type II-C,Type II-A,Type II-B	GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC,ACTCATTGATTTGATACTCTTCTAAAAC,CAGTTGAACTACTCATTGATTTGATACTCTTCTAAAACA,GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC,GTTGAACCACTCATTGATTTGATACTCTTCTAAAAC	36,28,39,36,36	0	0	NA	NA	NA:NA:NA:NA:NA	29,29,26,26,26	29	TypeII-C,TypeII-A,TypeII-B	csa3,cas3,DEDDh,DinG,csn2,cas2,cas9	NA|96aa|up_6|NZ_LT960790.1_1143703_1143991_-,NA	NA|437aa|up_9|NZ_LT960790.1_1140130_1141441_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|117aa|up_8|NZ_LT960790.1_1142520_1142871_-	pfam02152, FolB, Dihydroneopterin aldolase	NA|143aa|up_7|NZ_LT960790.1_1143219_1143648_+	PRK10514, PRK10514, putative acetyltransferase; Provisional	NA|96aa|up_6|NZ_LT960790.1_1143703_1143991_-	NA	NA|69aa|up_5|NZ_LT960790.1_1144175_1144382_+	pfam04070, DUF378, Domain of unknown function (DUF378)	NA|468aa|up_4|NZ_LT960790.1_1144459_1145863_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|163aa|up_3|NZ_LT960790.1_1145862_1146351_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|413aa|up_2|NZ_LT960790.1_1146337_1147576_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|435aa|up_1|NZ_LT960790.1_1147553_1148858_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|261aa|up_0|NZ_LT960790.1_1148870_1149653_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	csn2|224aa|down_0|NZ_LT960790.1_1151816_1152488_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|107aa|down_1|NZ_LT960790.1_1152484_1152805_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas9|1179aa|down_2|NZ_LT960790.1_1153910_1157447_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|351aa|down_3|NZ_LT960790.1_1157564_1158617_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas9|189aa|down_4|NZ_LT960790.1_1158727_1159294_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|272aa|down_5|NZ_LT960790.1_1159408_1160224_-	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold	NA|230aa|down_6|NZ_LT960790.1_1160243_1160933_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|345aa|down_7|NZ_LT960790.1_1160925_1161960_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|103aa|down_8|NZ_LT960790.1_1162311_1162620_-	cd06848, GCS_H, Glycine cleavage H-protein	NA|400aa|down_9|NZ_LT960790.1_1162638_1163838_-	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]
GCF_900234395.1_JOUY54_assembly_v1	NZ_LT960790	Lactobacillus sakei strain J54 chromosome 1	2	1937205-1937702	2,2,4	CRISPRCasFinder,CRT,PILER-CR	no		csa3,cas3,DEDDh,DinG,csn2,cas2,cas9	Orphan	GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT,GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT,GCTATTGTTTCCTTCAACATTCGGTTAAGATGAAAT	36,36,36	0	0	NA	NA	NA:NA:NA	7,7,4	7	Orphan	csa3,cas3,DEDDh,DinG,csn2,cas2,cas9	NA|196aa|up_4|NZ_LT960790.1_1933246_1933834_-,NA	NA|254aa|up_9|NZ_LT960790.1_1926791_1927553_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|508aa|up_8|NZ_LT960790.1_1927616_1929140_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|313aa|up_7|NZ_LT960790.1_1929142_1930081_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|445aa|up_6|NZ_LT960790.1_1930240_1931575_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|491aa|up_5|NZ_LT960790.1_1931612_1933085_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|196aa|up_4|NZ_LT960790.1_1933246_1933834_-	NA	NA|161aa|up_3|NZ_LT960790.1_1933919_1934402_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|314aa|up_2|NZ_LT960790.1_1934571_1935513_+	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|229aa|up_1|NZ_LT960790.1_1935509_1936196_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|281aa|up_0|NZ_LT960790.1_1936192_1937035_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|357aa|down_0|NZ_LT960790.1_1938145_1939215_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|642aa|down_1|NZ_LT960790.1_1939204_1941130_-	NF033441, BREX_BrxC, BREX system P-loop protein BrxC	NA|91aa|down_2|NZ_LT960790.1_1941149_1941422_-	pfam08747, DUF1788, Domain of unknown function (DUF1788)	NA|357aa|down_3|NZ_LT960790.1_1941438_1942508_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|143aa|down_4|NZ_LT960790.1_1942604_1943033_-	pfam08747, DUF1788, Domain of unknown function (DUF1788)	NA|198aa|down_5|NZ_LT960790.1_1943029_1943623_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|542aa|down_6|NZ_LT960790.1_1954503_1956129_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|631aa|down_7|NZ_LT960790.1_1956253_1958146_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|463aa|down_8|NZ_LT960790.1_1958176_1959565_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|241aa|down_9|NZ_LT960790.1_1959723_1960446_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]
