The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT960790	Lactobacillus sakei strain J54 chromosome 1	1964671	549657	602599	1964671	bacteriocin,holin,transposase	Streptococcus_phage(21.43%)	52	NA	NA
WP_056948822.1|549657_550032_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_016264738.1|550169_551111_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_056948877.1|551238_552066_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_056948819.1|552083_553106_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_099947264.1|553743_554664_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.1	4.4e-85
WP_011374229.1|554819_556544_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	55.0	9.5e-182
WP_056948818.1|556668_557301_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_056948816.1|557508_559512_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_056948814.1|559521_562374_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.9	4.5e-306
WP_056948812.1|562494_563031_+	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_011374234.1|563156_564041_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	31.0	8.4e-09
WP_099947265.1|564037_565072_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	54.8	2.0e-94
WP_099947266.1|565074_566019_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.0	2.9e-52
WP_099947267.1|566111_566567_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011374238.1|566680_567205_-	DsbA family protein	NA	NA	NA	NA	NA
WP_004265909.1|567427_568012_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	53.9	5.3e-52
WP_157771025.1|568554_569136_-	glycoside hydrolase family 73 protein	NA	A0A0A7RUS8	Clostridium_phage	43.3	2.6e-22
WP_076632187.1|569351_570311_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_099947269.1|570502_574438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056948801.1|574552_576034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056948799.1|576014_576353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016264756.1|577079_577724_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_025016307.1|577823_578204_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_016264758.1|578200_579112_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	31.9	4.6e-10
WP_099947270.1|581214_581961_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_035144627.1|581993_582395_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_016264762.1|582474_583218_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_016264763.1|583300_583867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099947271.1|583888_585007_-	NAD(P)-dependent alcohol dehydrogenase	NA	M1PHA2	Moumouvirus	30.7	2.9e-14
WP_016264765.1|585117_585759_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
WP_016264766.1|585897_586770_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.3	1.7e-17
WP_056948793.1|586773_587517_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_016264768.1|587516_588053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076632181.1|588080_588644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011374255.1|588636_589242_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011374256.1|589311_589638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016264772.1|589761_591402_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011374258.1|591481_591889_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_011374259.1|591954_592251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099947272.1|592456_592819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011374261.1|592947_593838_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	33.3	3.1e-19
WP_011374262.1|593837_594704_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011374263.1|594730_595183_+	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_099947273.1|595188_595596_+	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_099947274.1|595656_596004_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_004271310.1|596180_596294_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_157771026.1|596501_597659_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_004271265.1|597660_598407_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_004271264.1|598553_598739_+|bacteriocin	bacteriocin sakacin-P	bacteriocin	NA	NA	NA	NA
WP_076787949.1|598832_599129_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_099947275.1|599479_601483_+	peptide cleavage/export ABC transporter	NA	A0A1V0SJ29	Klosneuvirus	23.4	1.7e-12
WP_099769415.1|601529_602599_-|transposase	IS3-like element IS1520 family transposase	transposase	Q6J1X2	Lactobacillus_phage	34.9	6.3e-27
>prophage 2
NZ_LT960790	Lactobacillus sakei strain J54 chromosome 1	1964671	606276	644217	1964671	holin,integrase,capsid,tail,bacteriocin	Lactococcus_phage(31.25%)	55	614556:614572	647708:647724
WP_004271083.1|606276_606603_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_004271076.1|606946_607279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004271086.1|607494_608535_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	A0A1W6JHY1	Lactococcus_phage	30.8	4.7e-11
WP_099947278.1|608669_609194_-	endonuclease III	NA	NA	NA	NA	NA
WP_076800289.1|609241_609670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076800286.1|609828_611184_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_076800284.1|611293_611536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076800282.1|611592_613374_-	glycerophosphoryl diester phosphodiesterase membrane domain-containing protein	NA	NA	NA	NA	NA
WP_076800280.1|613536_613752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085844823.1|613884_614355_+	hypothetical protein	NA	NA	NA	NA	NA
614556:614572	attL	ATGCGCCACCCGGGAGT	NA	NA	NA	NA
WP_172952563.1|614734_615847_-|integrase	site-specific integrase	integrase	B4XYR4	Lactobacillus_phage	39.1	3.0e-64
WP_099947280.1|615986_616661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099947281.1|616720_618154_-	NINE protein	NA	A0A0A8WJ41	Clostridium_phage	34.1	4.5e-20
WP_099947282.1|618258_618714_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	36.9	2.1e-16
WP_076647219.1|618751_619069_-	helix-turn-helix transcriptional regulator	NA	A0A059T6G1	Listeria_phage	48.5	9.3e-19
WP_076647221.1|619304_619508_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SDM7	Streptococcus_phage	44.3	7.3e-09
WP_076647224.1|619570_619762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076647227.1|619742_620120_-	DUF2513 domain-containing protein	NA	A0A0H4TJ44	Erysipelothrix_phage	43.7	2.2e-14
WP_099947283.1|620229_620550_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_099947284.1|620546_620729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157771027.1|620734_621052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076789138.1|621053_621749_+	Rha family transcriptional regulator	NA	D2IYT0	Enterococcus_phage	51.5	1.3e-60
WP_076789099.1|622028_622811_+	hypothetical protein	NA	I2E8X7	Clostridium_phage	44.4	3.8e-45
WP_076789096.1|623074_623368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076789093.1|623339_623642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076789091.1|623664_623958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076789088.1|623973_624267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076789087.1|624263_624494_+	hypothetical protein	NA	D2J059	Enterococcus_phage	41.2	7.7e-07
WP_157771028.1|624493_624634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076789083.1|624630_624966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076789081.1|625087_625510_+	single-stranded DNA-binding protein	NA	B8R683	Lactobacillus_phage	34.3	6.6e-12
WP_099947537.1|625598_626051_+	hypothetical protein	NA	Q2I8C1	Bacillus_phage	49.6	2.0e-27
WP_099947286.1|626094_626826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076789076.1|626967_627150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076789073.1|627206_627533_+	HNH endonuclease	NA	A0A1B1IMY5	Lactococcus_phage	74.5	3.0e-44
WP_099947287.1|627648_628893_+	hypothetical protein	NA	O64275	Lactococcus_phage	74.9	1.4e-174
WP_099947288.1|628876_629659_+	hypothetical protein	NA	Q38114	Lactococcus_phage	62.2	4.9e-93
WP_157771029.1|629700_629841_+	hypothetical protein	NA	Q5ULN6	Lactobacillus_virus	60.0	2.7e-07
WP_099947289.1|629909_631319_+	DEAD/DEAH box helicase family protein	NA	A0A1P8BMS5	Lactococcus_phage	76.1	8.2e-224
WP_076789057.1|631398_631857_+	phage scaffold protein	NA	A0A141E167	Streptococcus_phage	54.1	7.1e-36
WP_076789056.1|631860_632754_+|capsid	phage capsid protein	capsid	Q7Y4I4	Streptococcus_phage	62.7	6.3e-105
WP_076789053.1|632756_633095_+	hypothetical protein	NA	A0A1P8BKC8	Lactococcus_phage	42.1	5.3e-12
WP_076789052.1|633099_633519_+	hypothetical protein	NA	Q7Y4I2	Streptococcus_phage	67.9	1.1e-43
WP_099947290.1|633481_633820_+	hypothetical protein	NA	A0A1P8BMP0	Lactococcus_phage	73.1	4.9e-42
WP_076789047.1|633812_634049_+	hypothetical protein	NA	A0A1P8BMT2	Lactococcus_phage	69.2	3.5e-23
WP_076789044.1|634048_634384_+	hypothetical protein	NA	A0A1B1IMT0	Lactococcus_phage	69.4	1.0e-36
WP_099947291.1|634395_635022_+|tail	phage tail protein	tail	A0A141E164	Streptococcus_phage	63.2	1.6e-59
WP_099947292.1|635018_635285_+	hypothetical protein	NA	Q9F4J5	Streptococcus_phage	54.8	2.8e-16
WP_099947538.1|635299_635686_+	hypothetical protein	NA	E8ZDK1	Streptococcus_phage	52.8	1.3e-27
WP_099947293.1|635675_638174_+|tail	phage tail protein	tail	Q77MU4	Lactococcus_phage	56.3	1.3e-115
WP_076789034.1|638157_638886_+|tail	phage tail family protein	tail	A0A1B2APY0	Phage_Wrath	40.3	4.6e-45
WP_157771030.1|639061_640426_+|tail	phage tail protein	tail	A0A1B2APX2	Phage_Wrath	38.2	1.6e-67
WP_099947295.1|640426_643564_+	CotH kinase family protein	NA	NA	NA	NA	NA
WP_099947296.1|643630_643990_+	hypothetical protein	NA	A0A0P0IZF9	Lactobacillus_phage	44.4	7.6e-09
WP_099947297.1|643986_644217_+|holin	holin	holin	A0A142F1N6	Bacillus_phage	44.7	1.9e-13
647708:647724	attR	ATGCGCCACCCGGGAGT	NA	NA	NA	NA
>prophage 3
NZ_LT960790	Lactobacillus sakei strain J54 chromosome 1	1964671	701845	710139	1964671		Prochlorococcus_phage(33.33%)	8	NA	NA
WP_056948306.1|701845_703141_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	29.6	8.0e-16
WP_099947307.1|703253_703979_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	39.9	1.6e-37
WP_011374365.1|703971_704232_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_056948308.1|704228_704915_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_056948311.1|704904_707130_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.5	3.8e-151
WP_011374368.1|707105_708539_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.9	6.5e-51
WP_099947308.1|708544_709573_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.3	1.3e-64
WP_056948314.1|709569_710139_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.4	1.6e-24
>prophage 4
NZ_LT960790	Lactobacillus sakei strain J54 chromosome 1	1964671	1036329	1043774	1964671	tRNA	Staphylococcus_phage(33.33%)	7	NA	NA
WP_025015768.1|1036329_1037175_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	44.2	7.7e-20
WP_056947598.1|1037371_1037872_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	38.0	3.5e-28
WP_056947596.1|1037882_1038833_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	64.3	2.7e-122
WP_056947594.1|1039028_1040918_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.3	2.3e-48
WP_056947593.1|1041030_1041492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056947591.1|1041560_1042754_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A249XS88	Mycobacterium_phage	33.0	3.9e-33
WP_076632489.1|1042901_1043774_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	41.5	8.2e-57
>prophage 5
NZ_LT960790	Lactobacillus sakei strain J54 chromosome 1	1964671	1195834	1219904	1964671	transposase,protease	Enterococcus_phage(37.5%)	28	NA	NA
WP_099947544.1|1195834_1196446_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_011374852.1|1196466_1196787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035146748.1|1196779_1196962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049762129.1|1196958_1197612_-	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_056948772.1|1197737_1198160_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_056948015.1|1199073_1199769_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A096XT26	Enterococcus_phage	40.3	5.0e-17
WP_011374858.1|1200483_1200735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016265282.1|1200961_1201336_-	hypothetical protein	NA	E3W8I0	Leuconostoc_phage	41.9	4.1e-05
WP_099769415.1|1202284_1203353_+|transposase	IS3-like element IS1520 family transposase	transposase	Q6J1X2	Lactobacillus_phage	34.9	6.3e-27
WP_172952569.1|1203616_1204648_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	34.7	6.1e-43
WP_011374861.1|1205189_1205435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056948883.1|1205454_1205829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056948015.1|1205855_1206551_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A096XT26	Enterococcus_phage	40.3	5.0e-17
WP_011374864.1|1206792_1208835_-	potassium transporter Kup	NA	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	35.5	8.9e-70
WP_011374865.1|1208992_1209166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011374866.1|1209298_1209778_+	nucleoside 2-deoxyribosyltransferase	NA	A0A1D3SPR3	Enterococcus_phage	37.2	3.8e-16
WP_011374868.1|1211559_1212279_-	aquaporin family protein	NA	M1HCP3	Acanthocystis_turfacea_Chlorella_virus	34.1	1.7e-28
WP_076639187.1|1212495_1213170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011374870.1|1213291_1213984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011374871.1|1214210_1214645_+	universal stress protein	NA	NA	NA	NA	NA
WP_011374872.1|1214902_1215046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011374874.1|1215456_1216044_+	C39 family peptidase	NA	NA	NA	NA	NA
WP_056948729.1|1216065_1216794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011374876.1|1216815_1217127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056948732.1|1217242_1218589_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_011374878.1|1218690_1218939_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_157771031.1|1219019_1219664_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_082267781.1|1219667_1219904_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_LT960790	Lactobacillus sakei strain J54 chromosome 1	1964671	1319237	1327305	1964671		Bacillus_phage(33.33%)	9	NA	NA
WP_099947393.1|1319237_1320983_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	27.7	1.2e-46
WP_011374970.1|1321124_1321355_-	YneF family protein	NA	NA	NA	NA	NA
WP_016265356.1|1321435_1321678_-	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_011374972.1|1321812_1322427_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	58.2	1.1e-15
WP_096584669.1|1322519_1323038_-	adenine phosphoribosyltransferase	NA	A0A2K9L2N8	Tupanvirus	32.2	5.6e-13
WP_025016402.1|1323061_1325374_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.9	3.8e-77
WP_011374975.1|1325518_1326511_+	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.6	1.3e-47
WP_011374976.1|1326596_1326962_+	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_011374977.1|1326978_1327305_+	heavy metal-binding domain-containing protein	NA	M4STD1	Rhodobacter_phage	34.6	5.4e-06
>prophage 1
NZ_LT960791	Lactobacillus sakei strain J54 plasmid 2, complete sequence	33463	17830	27146	33463	transposase	Enterococcus_phage(33.33%)	8	NA	NA
WP_025016512.1|17830_19978_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	60.2	1.0e-254
WP_099947557.1|20084_21011_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P8A9	Corynebacterium_phage	31.7	2.2e-36
WP_016265840.1|21025_21976_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	55.0	3.2e-99
WP_025016529.1|22314_23490_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	29.2	8.2e-28
WP_099947558.1|23601_24051_+	DUF305 domain-containing protein	NA	A0A1V0SJW0	Klosneuvirus	33.1	2.0e-06
WP_025016531.1|24108_24669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003587210.1|25129_25597_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_011373852.1|26225_27146_+|transposase	IS30-like element ISLsa1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	38.2	9.2e-51
