assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900232105.1_Kuenenia_stuttgartiensis_MBR1	NZ_LT934425	Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1	1	93784-94427	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	Type III-A,Type III-C,Type III-D,Type III-B	GTCTCAATCCCTTCTACATCAGGTCAATGATTTCCAC,GTCTCAATCCCTTCTACATCAGGTCAATGATTTCCAC,GTCTCAATCCCTTCTACATCAGGTCAATGATTTCCAC	37,37,37	0	0	NA	NA	NA:NA:NA	8,8,8	8	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	NA|91aa|up_9|NZ_LT934425.1_85040_85313_+,NA|119aa|up_8|NZ_LT934425.1_85378_85735_-,NA|179aa|up_5|NZ_LT934425.1_88052_88589_-,NA|299aa|down_4|NZ_LT934425.1_97077_97974_-,NA|132aa|down_6|NZ_LT934425.1_100038_100434_-	NA|91aa|up_9|NZ_LT934425.1_85040_85313_+	NA	NA|119aa|up_8|NZ_LT934425.1_85378_85735_-	NA	NA|405aa|up_7|NZ_LT934425.1_85697_86912_+	pfam00665, rve, Integrase core domain	NA|264aa|up_6|NZ_LT934425.1_86914_87706_+	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily	NA|179aa|up_5|NZ_LT934425.1_88052_88589_-	NA	NA|99aa|up_4|NZ_LT934425.1_88769_89066_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|189aa|up_3|NZ_LT934425.1_89935_90502_+	pfam02622, DUF179, Uncharacterized ACR, COG1678	NA|151aa|up_2|NZ_LT934425.1_90654_91107_+	PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional	NA|144aa|up_1|NZ_LT934425.1_91199_91631_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|109aa|up_0|NZ_LT934425.1_93203_93530_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|92aa|down_0|NZ_LT934425.1_94632_94908_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|334aa|down_1|NZ_LT934425.1_94911_95913_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	RT|315aa|down_2|NZ_LT934425.1_95894_96839_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|54aa|down_3|NZ_LT934425.1_96841_97003_-	pfam09620, Cas_csx3, CRISPR-associated protein (Cas_csx3)	NA|299aa|down_4|NZ_LT934425.1_97077_97974_-	NA	csx1|462aa|down_5|NZ_LT934425.1_98645_100031_-	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6)	NA|132aa|down_6|NZ_LT934425.1_100038_100434_-	NA	csm5gr7|390aa|down_7|NZ_LT934425.1_100456_101626_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|325aa|down_8|NZ_LT934425.1_101636_102611_-	TIGR01903, Hypothetical_protein	csm3gr7|266aa|down_9|NZ_LT934425.1_102620_103418_-	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3
GCF_900232105.1_Kuenenia_stuttgartiensis_MBR1	NZ_LT934425	Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1	2	109130-109914	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	Type III-A,Type III-C,Type III-D,Type III-B	GTCTCAATCCCTTCTACATCAGGTCAATGATTTCCAC,GTCTCAATCCCTTCTACATCAGGTCAATGATTTCCAC,GTCTCAATCCCTTCTACATCAGGTCAATGATTTCCAC	37,37,37	1	1	109471-109506	NZ_LT934425.1_1837323-1837288	NA:NA:NA	10,10,9	10	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	NA|132aa|up_9|NZ_LT934425.1_100038_100434_-,NA|169aa|up_4|NZ_LT934425.1_103892_104399_-,NA|151aa|down_2|NZ_LT934425.1_112565_113018_-	NA|132aa|up_9|NZ_LT934425.1_100038_100434_-	NA	csm5gr7|390aa|up_8|NZ_LT934425.1_100456_101626_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|325aa|up_7|NZ_LT934425.1_101636_102611_-	TIGR01903, Hypothetical_protein	csm3gr7|266aa|up_6|NZ_LT934425.1_102620_103418_-	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3	csm2gr11|145aa|up_5|NZ_LT934425.1_103436_103871_-	pfam03750, Csm2_III-A, Csm2 Type III-A	NA|169aa|up_4|NZ_LT934425.1_103892_104399_-	NA	NA|579aa|up_3|NZ_LT934425.1_104558_106295_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	cas10|684aa|up_2|NZ_LT934425.1_106359_108411_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|52aa|up_1|NZ_LT934425.1_108659_108815_-	TIGR02436, S23_ribosomal_protein, four helix bundle protein	NA|61aa|up_0|NZ_LT934425.1_108890_109073_-	TIGR02436, S23_ribosomal_protein, four helix bundle protein	cas6|321aa|down_0|NZ_LT934425.1_110205_111168_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|226aa|down_1|NZ_LT934425.1_111830_112508_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|151aa|down_2|NZ_LT934425.1_112565_113018_-	NA	NA|341aa|down_3|NZ_LT934425.1_113041_114064_-	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs	NA|135aa|down_4|NZ_LT934425.1_114195_114600_-	cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit	NA|469aa|down_5|NZ_LT934425.1_114602_116009_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|291aa|down_6|NZ_LT934425.1_116155_117028_-	pfam00231, ATP-synt, ATP synthase	NA|505aa|down_7|NZ_LT934425.1_117031_118546_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|183aa|down_8|NZ_LT934425.1_118667_119216_-	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	NA|170aa|down_9|NZ_LT934425.1_119205_119715_-	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b
GCF_900232105.1_Kuenenia_stuttgartiensis_MBR1	NZ_LT934425	Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1	3	489910-490524	3,3,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas5,cas7,cas8a4,cas3	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	Unclear	GTTTCAATTCCTTATAGGTGCAATGAGAC,GTTTCAATTCCTTATAGGTGCAATGAGAC,GTTTCAATTCCTTATAGGTGCAATGAGAC	29,29,29	1	1	490331-490366	NZ_LT934425.1_2982506-2982471	NA:NA:NA	9,8,8	9	Unclear	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	NA|210aa|up_0|NZ_LT934425.1_488884_489514_-,NA|61aa|down_5|NZ_LT934425.1_499349_499532_-,NA|76aa|down_9|NZ_LT934425.1_501537_501765_-	NA|190aa|up_9|NZ_LT934425.1_473375_473945_-	cd02062, Nitro_FMN_reductase, nitroreductase family protein	NA|653aa|up_8|NZ_LT934425.1_474627_476586_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|291aa|up_7|NZ_LT934425.1_476612_477485_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|279aa|up_6|NZ_LT934425.1_477481_478318_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|438aa|up_5|NZ_LT934425.1_479111_480425_+	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|949aa|up_4|NZ_LT934425.1_481315_484162_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|665aa|up_3|NZ_LT934425.1_484479_486474_+	TIGR03663, TIGR03663, TIGR03663 family protein	NA|245aa|up_2|NZ_LT934425.1_486615_487350_-	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation	NA|401aa|up_1|NZ_LT934425.1_487516_488719_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|210aa|up_0|NZ_LT934425.1_488884_489514_-	NA	NA|368aa|down_0|NZ_LT934425.1_490642_491746_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|579aa|down_1|NZ_LT934425.1_493140_494877_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|443aa|down_2|NZ_LT934425.1_496298_497627_+	pfam14236, DUF4338, Domain of unknown function (DUF4338)	NA|156aa|down_3|NZ_LT934425.1_497589_498057_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	cas2|89aa|down_4|NZ_LT934425.1_499080_499347_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|61aa|down_5|NZ_LT934425.1_499349_499532_-	NA	cas1|331aa|down_6|NZ_LT934425.1_499525_500518_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|171aa|down_7|NZ_LT934425.1_500625_501138_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|129aa|down_8|NZ_LT934425.1_501151_501538_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|76aa|down_9|NZ_LT934425.1_501537_501765_-	NA
GCF_900232105.1_Kuenenia_stuttgartiensis_MBR1	NZ_LT934425	Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1	4	491955-493063	4,4,4	PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas4,cas5,cas7,cas8a4,cas3,cas6	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	Unclear	GTTTCAATTCCTTATAGGTGCAATGAGAC,GTTTCAATTCCTTATAGGTGCAATGAGAC,GTTTCAATTCCTTATAGGTGCAATGAGAC	29,29,29	0	0	NA	NA	NA:NA:NA	17,16,15	17	Unclear	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	NA|210aa|up_1|NZ_LT934425.1_488884_489514_-,NA|61aa|down_4|NZ_LT934425.1_499349_499532_-,NA|76aa|down_8|NZ_LT934425.1_501537_501765_-	NA|653aa|up_9|NZ_LT934425.1_474627_476586_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|291aa|up_8|NZ_LT934425.1_476612_477485_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|279aa|up_7|NZ_LT934425.1_477481_478318_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|438aa|up_6|NZ_LT934425.1_479111_480425_+	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|949aa|up_5|NZ_LT934425.1_481315_484162_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|665aa|up_4|NZ_LT934425.1_484479_486474_+	TIGR03663, TIGR03663, TIGR03663 family protein	NA|245aa|up_3|NZ_LT934425.1_486615_487350_-	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation	NA|401aa|up_2|NZ_LT934425.1_487516_488719_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|210aa|up_1|NZ_LT934425.1_488884_489514_-	NA	NA|368aa|up_0|NZ_LT934425.1_490642_491746_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|579aa|down_0|NZ_LT934425.1_493140_494877_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|443aa|down_1|NZ_LT934425.1_496298_497627_+	pfam14236, DUF4338, Domain of unknown function (DUF4338)	NA|156aa|down_2|NZ_LT934425.1_497589_498057_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	cas2|89aa|down_3|NZ_LT934425.1_499080_499347_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|61aa|down_4|NZ_LT934425.1_499349_499532_-	NA	cas1|331aa|down_5|NZ_LT934425.1_499525_500518_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|171aa|down_6|NZ_LT934425.1_500625_501138_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|129aa|down_7|NZ_LT934425.1_501151_501538_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|76aa|down_8|NZ_LT934425.1_501537_501765_-	NA	cas5|254aa|down_9|NZ_LT934425.1_502156_502918_-	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain
GCF_900232105.1_Kuenenia_stuttgartiensis_MBR1	NZ_LT934425	Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1	5	495108-496174	5,5,5	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas5,cas7,cas8a4,cas3,cas6	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	Unclear	GTTTCAATTCCTTATAGGTGCAATGAGAC,GTTTCAATTCCTTATAGGTGCAATGAGAC,GTTTCAATTCCTTATAGGTGCAATGAGAC	29,29,29	0	0	NA	NA	NA:NA:NA	16,16,16	16	Unclear	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	NA|210aa|up_2|NZ_LT934425.1_488884_489514_-,NA|61aa|down_3|NZ_LT934425.1_499349_499532_-,NA|76aa|down_7|NZ_LT934425.1_501537_501765_-	NA|291aa|up_9|NZ_LT934425.1_476612_477485_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|279aa|up_8|NZ_LT934425.1_477481_478318_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|438aa|up_7|NZ_LT934425.1_479111_480425_+	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|949aa|up_6|NZ_LT934425.1_481315_484162_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|665aa|up_5|NZ_LT934425.1_484479_486474_+	TIGR03663, TIGR03663, TIGR03663 family protein	NA|245aa|up_4|NZ_LT934425.1_486615_487350_-	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation	NA|401aa|up_3|NZ_LT934425.1_487516_488719_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|210aa|up_2|NZ_LT934425.1_488884_489514_-	NA	NA|368aa|up_1|NZ_LT934425.1_490642_491746_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|579aa|up_0|NZ_LT934425.1_493140_494877_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|443aa|down_0|NZ_LT934425.1_496298_497627_+	pfam14236, DUF4338, Domain of unknown function (DUF4338)	NA|156aa|down_1|NZ_LT934425.1_497589_498057_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	cas2|89aa|down_2|NZ_LT934425.1_499080_499347_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|61aa|down_3|NZ_LT934425.1_499349_499532_-	NA	cas1|331aa|down_4|NZ_LT934425.1_499525_500518_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|171aa|down_5|NZ_LT934425.1_500625_501138_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|129aa|down_6|NZ_LT934425.1_501151_501538_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|76aa|down_7|NZ_LT934425.1_501537_501765_-	NA	cas5|254aa|down_8|NZ_LT934425.1_502156_502918_-	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain	cas7|328aa|down_9|NZ_LT934425.1_502919_503903_-	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2
GCF_900232105.1_Kuenenia_stuttgartiensis_MBR1	NZ_LT934425	Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1	6	498283-498766	6,6,6	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas5,cas7,cas8a4,cas3,cas6	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	Unclear	GTTTCAATTCCTTATAGGTGCAATGAGAC,GTTTCAATTCCTTATAGGTGCAATGAGAC,GTTTCAATTCCTTATAGGTGCAATGAGAC	29,29,29	0	0	NA	NA	NA:NA:NA	7,7,7	7	Unclear	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	NA|210aa|up_4|NZ_LT934425.1_488884_489514_-,NA|61aa|down_1|NZ_LT934425.1_499349_499532_-,NA|76aa|down_5|NZ_LT934425.1_501537_501765_-,cas8a4|569aa|down_8|NZ_LT934425.1_503905_505612_-	NA|438aa|up_9|NZ_LT934425.1_479111_480425_+	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|949aa|up_8|NZ_LT934425.1_481315_484162_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|665aa|up_7|NZ_LT934425.1_484479_486474_+	TIGR03663, TIGR03663, TIGR03663 family protein	NA|245aa|up_6|NZ_LT934425.1_486615_487350_-	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation	NA|401aa|up_5|NZ_LT934425.1_487516_488719_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|210aa|up_4|NZ_LT934425.1_488884_489514_-	NA	NA|368aa|up_3|NZ_LT934425.1_490642_491746_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|579aa|up_2|NZ_LT934425.1_493140_494877_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|443aa|up_1|NZ_LT934425.1_496298_497627_+	pfam14236, DUF4338, Domain of unknown function (DUF4338)	NA|156aa|up_0|NZ_LT934425.1_497589_498057_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	cas2|89aa|down_0|NZ_LT934425.1_499080_499347_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|61aa|down_1|NZ_LT934425.1_499349_499532_-	NA	cas1|331aa|down_2|NZ_LT934425.1_499525_500518_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|171aa|down_3|NZ_LT934425.1_500625_501138_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|129aa|down_4|NZ_LT934425.1_501151_501538_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|76aa|down_5|NZ_LT934425.1_501537_501765_-	NA	cas5|254aa|down_6|NZ_LT934425.1_502156_502918_-	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain	cas7|328aa|down_7|NZ_LT934425.1_502919_503903_-	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2	cas8a4|569aa|down_8|NZ_LT934425.1_503905_505612_-	NA	cas3|809aa|down_9|NZ_LT934425.1_505608_508035_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
GCF_900232105.1_Kuenenia_stuttgartiensis_MBR1	NZ_LT934425	Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1	7	2235157-2235229	7	CRISPRCasFinder	no		csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	Orphan	CCCGAAGGGATGTAATTATTATAG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	NA|148aa|up_7|NZ_LT934425.1_2223543_2223987_+,NA|72aa|up_4|NZ_LT934425.1_2225638_2225854_-,NA|343aa|up_3|NZ_LT934425.1_2226383_2227412_-,NA|218aa|down_2|NZ_LT934425.1_2240174_2240828_-	NA|85aa|up_9|NZ_LT934425.1_2222727_2222982_+	pfam04457, DUF504, Protein of unknown function (DUF504)	NA|38aa|up_8|NZ_LT934425.1_2223377_2223491_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|148aa|up_7|NZ_LT934425.1_2223543_2223987_+	NA	NA|109aa|up_6|NZ_LT934425.1_2224859_2225186_+	pfam13744, HTH_37, Helix-turn-helix domain	NA|79aa|up_5|NZ_LT934425.1_2225386_2225623_-	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|72aa|up_4|NZ_LT934425.1_2225638_2225854_-	NA	NA|343aa|up_3|NZ_LT934425.1_2226383_2227412_-	NA	NA|421aa|up_2|NZ_LT934425.1_2227829_2229092_-	cd00296, SIR2, SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose	NA|673aa|up_1|NZ_LT934425.1_2229093_2231112_-	cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria	NA|1269aa|up_0|NZ_LT934425.1_2231112_2234919_-	pfam12950, TaqI_C, TaqI-like C-terminal specificity domain	NA|100aa|down_0|NZ_LT934425.1_2236054_2236354_-	pfam17761, DUF1016_N, DUF1016 N-terminal domain	NA|1113aa|down_1|NZ_LT934425.1_2236355_2239694_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|218aa|down_2|NZ_LT934425.1_2240174_2240828_-	NA	NA|224aa|down_3|NZ_LT934425.1_2240884_2241556_-	pfam12225, MTHFR_C, Methylene-tetrahydrofolate reductase C terminal	NA|701aa|down_4|NZ_LT934425.1_2241593_2243696_-	PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional	NA|138aa|down_5|NZ_LT934425.1_2243696_2244110_-	COG0432, COG0432, Uncharacterized conserved protein [Function unknown]	NA|536aa|down_6|NZ_LT934425.1_2244246_2245854_-	COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]	NA|369aa|down_7|NZ_LT934425.1_2246404_2247511_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|950aa|down_8|NZ_LT934425.1_2247519_2250369_+	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]	NA|167aa|down_9|NZ_LT934425.1_2250386_2250887_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional
GCF_900232105.1_Kuenenia_stuttgartiensis_MBR1	NZ_LT934425	Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1	8	2300071-2300146	8	CRISPRCasFinder	no		csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	Orphan	TAGGTTAGGTTTGACCCCATTGACT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	NA|187aa|up_3|NZ_LT934425.1_2297719_2298280_+,NA|64aa|up_2|NZ_LT934425.1_2298583_2298775_+,NA|587aa|down_0|NZ_LT934425.1_2300180_2301941_+,NA|536aa|down_2|NZ_LT934425.1_2303303_2304911_+,NA|396aa|down_3|NZ_LT934425.1_2304907_2306095_+	NA|335aa|up_9|NZ_LT934425.1_2291430_2292435_-	pfam13435, Cytochrome_C554, Cytochrome c554 and c-prime	NA|105aa|up_8|NZ_LT934425.1_2292415_2292730_-	MTH00016, CYTB, cytochrome b; Validated	NA|193aa|up_7|NZ_LT934425.1_2293199_2293778_-	cd08544, Reeler, Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins	NA|249aa|up_6|NZ_LT934425.1_2293819_2294566_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|628aa|up_5|NZ_LT934425.1_2294730_2296614_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|121aa|up_4|NZ_LT934425.1_2296655_2297018_-	pfam10446, DUF2457, Protein of unknown function (DUF2457)	NA|187aa|up_3|NZ_LT934425.1_2297719_2298280_+	NA	NA|64aa|up_2|NZ_LT934425.1_2298583_2298775_+	NA	NA|66aa|up_1|NZ_LT934425.1_2299241_2299439_+	pfam10047, DUF2281, Protein of unknown function (DUF2281)	NA|117aa|up_0|NZ_LT934425.1_2299416_2299767_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|587aa|down_0|NZ_LT934425.1_2300180_2301941_+	NA	NA|488aa|down_1|NZ_LT934425.1_2301865_2303329_+	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain	NA|536aa|down_2|NZ_LT934425.1_2303303_2304911_+	NA	NA|396aa|down_3|NZ_LT934425.1_2304907_2306095_+	NA	NA|501aa|down_4|NZ_LT934425.1_2307042_2308545_+	pfam11074, DUF2779, Domain of unknown function(DUF2779)	NA|158aa|down_5|NZ_LT934425.1_2308850_2309324_+	pfam13646, HEAT_2, HEAT repeats	NA|76aa|down_6|NZ_LT934425.1_2309915_2310143_+	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown]	NA|134aa|down_7|NZ_LT934425.1_2310142_2310544_+	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins	NA|195aa|down_8|NZ_LT934425.1_2310955_2311540_-	cd16322, TTHA1623-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1623 and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|down_9|NZ_LT934425.1_2311597_2312242_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]
GCF_900232105.1_Kuenenia_stuttgartiensis_MBR1	NZ_LT934425	Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1	9	2962768-2969923	7,7,9,8	CRT,PILER-CR,CRISPRCasFinder,PILER-CR	no	RT,cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	Type I-B	GTTTCAATTCCTCANNNTAGGTNAGAATGAAAAC,GTTTCAATTCCTCATAGGTAGAATGAAAAC,GTTTCAATTCCTCATAGGTAGAATGAAAAC,GTTTCAATTCCTCATAGGTAGAATGAAAAC	34,30,30,30	0	0	NA	NA	NA:NA:NA:NA	107,104,106,104	107	TypeI-B	csa3,RT,cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas3,cas4,cas5,cas7,cas8a4,Cas9_archaeal,DEDDh,DinG,cas3HD,cas7b,cas8b1,PD-DExK	NA|168aa|up_8|NZ_LT934425.1_2948998_2949502_-,NA|386aa|up_7|NZ_LT934425.1_2949504_2950662_-,NA|49aa|up_6|NZ_LT934425.1_2951079_2951226_+,NA|101aa|up_4|NZ_LT934425.1_2953126_2953429_-,NA|65aa|down_6|NZ_LT934425.1_2975505_2975700_-,cas8b1|656aa|down_8|NZ_LT934425.1_2976710_2978678_-	NA|662aa|up_9|NZ_LT934425.1_2947013_2948999_-	pfam12532, DUF3732, Protein of unknown function (DUF3732)	NA|168aa|up_8|NZ_LT934425.1_2948998_2949502_-	NA	NA|386aa|up_7|NZ_LT934425.1_2949504_2950662_-	NA	NA|49aa|up_6|NZ_LT934425.1_2951079_2951226_+	NA	NA|550aa|up_5|NZ_LT934425.1_2951442_2953092_-	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|101aa|up_4|NZ_LT934425.1_2953126_2953429_-	NA	NA|317aa|up_3|NZ_LT934425.1_2954293_2955244_+	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism]	NA|362aa|up_2|NZ_LT934425.1_2956438_2957524_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1079aa|up_1|NZ_LT934425.1_2957559_2960796_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|480aa|up_0|NZ_LT934425.1_2960890_2962330_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	cas2|89aa|down_0|NZ_LT934425.1_2970061_2970328_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|332aa|down_1|NZ_LT934425.1_2970327_2971323_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|168aa|down_2|NZ_LT934425.1_2971329_2971833_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|853aa|down_3|NZ_LT934425.1_2971825_2974384_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|266aa|down_4|NZ_LT934425.1_2974367_2975165_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	NA|111aa|down_5|NZ_LT934425.1_2975186_2975519_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|65aa|down_6|NZ_LT934425.1_2975505_2975700_-	NA	cas7b|327aa|down_7|NZ_LT934425.1_2975733_2976714_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|656aa|down_8|NZ_LT934425.1_2976710_2978678_-	NA	cas6|252aa|down_9|NZ_LT934425.1_2978681_2979437_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6
