The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT906614	Vibrio cholerae O1 biovar El Tor str. N16961 chromosome 1	2961182	562352	569576	2961182		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_000698379.1|562352_563105_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
WP_000002982.1|563097_563724_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000177568.1|563723_564659_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000116737.1|564732_565740_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001894770.1|565832_568421_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_001279365.1|568688_569576_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 2
NZ_LT906614	Vibrio cholerae O1 biovar El Tor str. N16961 chromosome 1	2961182	801203	808396	2961182		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|801203_802418_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|802454_802838_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|802898_803222_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|803270_803786_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196560.1|803809_805660_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001124187.1|805673_806012_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|806060_806255_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|806474_807764_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|807967_808396_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 3
NZ_LT906614	Vibrio cholerae O1 biovar El Tor str. N16961 chromosome 1	2961182	1546768	1579378	2961182	coat	Vibrio_phage(47.37%)	24	NA	NA
WP_149591715.1|1546768_1548874_-	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
WP_001906284.1|1549300_1549648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001881196.1|1549673_1550135_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_000517826.1|1550158_1563796_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_000053920.1|1564163_1564388_-	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_001911551.1|1564481_1564832_-	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_000743997.1|1564833_1565913_-	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1566038_1566377_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000593522.1|1566978_1567353_-	cholera enterotoxin binding subunit CtxB	NA	Q77DH7	Vibrio_virus	100.0	7.8e-65
WP_001881225.1|1567349_1568126_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000021616.1|1568224_1569424_-	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_000979342.1|1569420_1569714_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_001268534.1|1569710_1570898_-|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000493022.1|1571004_1571253_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001911548.1|1571388_1571748_-	hypothetical protein	NA	A0A0N9HE73	Vibrio_phage	100.0	4.4e-65
WP_000743997.1|1571749_1572829_-	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1572954_1573293_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000170634.1|1573782_1574367_-	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_001161489.1|1574359_1574527_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1574604_1575297_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000512956.1|1575426_1575696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1575715_1577284_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000005769.1|1577460_1578012_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1579210_1579378_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
>prophage 4
NZ_LT906614	Vibrio cholerae O1 biovar El Tor str. N16961 chromosome 1	2961182	2422804	2429421	2961182		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2422804_2423275_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|2423539_2424649_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|2424689_2425343_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2425347_2426451_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2426476_2426926_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_000366574.1|2427025_2428276_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2428287_2429421_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
