The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	58006	116787	4122636	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
WP_003812608.1|58006_59956_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|60343_61120_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|61125_61518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|61939_62890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|62886_63984_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|64015_64966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|66747_67989_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|68000_68774_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|68800_69751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|70230_70887_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|70901_72569_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|72571_73201_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|73412_74507_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|74651_75464_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|75467_77171_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|77221_78352_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|78538_79615_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|79696_80347_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|80361_81765_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|82048_82867_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|82863_83568_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|84467_85583_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|85616_85991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|86013_87171_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|87183_87417_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|88051_91021_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|91035_91245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|91396_92026_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|92022_94113_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|94136_94817_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|94813_95374_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|95380_96478_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|96630_97224_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|97220_98513_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|98526_99069_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|99078_99915_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|99948_101010_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|101051_102104_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|102119_102422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|102563_103514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|103692_105387_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|105383_106469_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|106516_107416_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|107426_108071_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|109092_112335_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|112345_113500_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|113726_114689_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|114787_115738_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|115836_116787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	170373	236873	4122636	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|170373_171324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|171693_172266_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|172268_173279_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|173271_173772_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|173782_174124_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|174135_174927_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|174943_175213_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|175235_176024_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|176070_177087_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|177303_178746_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|178924_180544_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|180664_182485_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|182563_184096_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|184129_185776_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|185845_186868_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|186885_188019_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|188021_188711_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|188710_189496_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|189539_190304_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|190342_191764_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|191829_192534_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|192581_193001_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|193013_193421_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|193604_194315_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|194441_194732_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|194749_195232_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|199737_200892_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010929632.1|201197_202214_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|202460_203249_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|203315_203996_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|203992_204763_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|204861_205812_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|205867_206785_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|206795_207974_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|207993_208989_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|210577_211186_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|211173_212214_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|212231_213194_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|213190_214384_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|214380_215178_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|215203_216190_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|216208_218248_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|218449_219130_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|219143_220055_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|220051_220630_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|220768_221674_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|221681_225101_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|225088_227689_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|228644_229277_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|229670_230429_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|230425_231628_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|231815_232766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|233673_234819_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|234805_235561_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|235677_235857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|235922_236873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	420324	571972	4122636	holin,transposase,tRNA	uncultured_Mediterranean_phage(15.79%)	117	NA	NA
WP_010929956.1|420324_421275_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|421373_422255_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|422332_423712_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|423750_424596_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_003813580.1|424611_424956_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|424958_425495_-	iron transporter	NA	NA	NA	NA	NA
WP_003813585.1|425667_426243_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|426345_427083_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|427150_428788_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|428895_429651_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|429638_430601_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|430702_431503_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|431564_433640_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|433804_436180_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|436260_437616_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|439094_439817_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|439871_440855_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|440984_441935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|441931_442834_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|442921_443680_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|443692_444784_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|444881_446309_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|446538_447753_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|447798_450669_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|453079_453568_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|453693_456390_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|456544_458827_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|459000_459624_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|459722_460673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|460719_461274_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|461341_462187_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|462256_463225_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|466920_470847_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|471582_474813_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|475094_475922_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|475955_476651_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|476643_477924_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|477933_478911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|478892_480593_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|480695_481799_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|481829_482585_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|482591_484112_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|484154_484457_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|484453_485086_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|485164_487030_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|487026_487821_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|487849_488965_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|489869_490748_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|490747_491572_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|491739_492690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|492902_495752_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|495733_496462_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|496602_498066_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|498062_498434_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|498451_499765_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|499801_500260_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|500372_501323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|501421_502372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|502368_503382_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|503521_504508_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|504866_505574_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|506154_507105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|507256_507859_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|507877_508510_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|508554_508806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|508747_510634_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|510652_511495_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|511491_512850_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|513070_513865_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|514095_515589_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|515824_517906_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|518100_519141_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|519275_520292_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|520313_521171_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|521215_521992_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|522359_523310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|523336_523801_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|525007_527296_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|527412_528285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|528327_529482_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|529516_530347_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|530430_531975_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|532017_532377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|532378_532792_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|532832_533150_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|533234_533951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|534214_535636_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|535702_538450_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|538782_539799_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|540134_540776_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|540866_542303_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|542460_543534_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|543530_544667_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|544811_545156_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|545222_547103_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|547152_548088_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010929632.1|548420_549437_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|550374_551802_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|551798_552821_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|552810_553284_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|553424_554312_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|554308_555952_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|555948_556998_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_023853536.1|557786_558803_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|558902_559535_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|559543_559933_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|559985_561038_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|561901_563608_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|563681_564182_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|564196_566254_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|566280_566574_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|566675_567623_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|567635_568511_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|568631_569192_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|569226_569550_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|569985_570723_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|571021_571972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	592923	665417	4122636	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|592923_593874_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|593916_595092_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|595313_597104_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|597116_598778_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|598790_601496_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|601788_603543_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|603539_604166_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|604162_605014_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|605089_607204_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|607390_608005_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|608150_608402_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|608471_609854_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|609850_613030_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|613837_614755_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|614806_615538_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|615597_616170_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|617678_618695_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|618832_619882_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|619986_620937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|621032_621758_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|621968_622349_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|622654_623527_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|623534_623915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|624068_625343_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|626830_627739_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|628536_629601_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|631437_632439_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|632661_633303_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|633385_635212_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|635455_636385_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|636384_637134_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|637205_638120_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|638139_639285_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|639345_640257_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|640337_641288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|641386_641971_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|642005_642995_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|642991_643933_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|643929_645150_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|645192_645507_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|645698_646058_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|646059_647775_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|647962_648634_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|648648_649977_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|649973_650873_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|650959_652045_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|652037_653171_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|653170_655852_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|656222_656804_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|656929_657655_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|657651_658329_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|658544_659726_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|660498_660681_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|660710_661661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|661790_662183_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|662459_663371_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|663495_664470_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|664466_665417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	678924	733491	4122636	transposase,holin	Bacillus_phage(33.33%)	45	NA	NA
WP_010930066.1|678924_679875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|679987_680239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|680744_681863_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|681982_682195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|682354_682576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|682628_683579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|684755_686126_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|686158_686950_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|686962_688018_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|688043_688919_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|689024_689273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|689307_690762_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|690758_691280_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|691308_692661_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|692884_695773_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|697917_699219_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|699233_699950_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|700231_700912_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|700923_701091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|701199_701346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|701439_702099_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|702497_704330_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|704326_705277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|706440_708156_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|708166_708658_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|708730_709747_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|709914_710694_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|710712_711240_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|711533_711803_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|711893_714053_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|714173_714893_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|714889_715840_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|715938_716889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|717029_718247_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|718240_718852_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|719485_720463_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|720606_721353_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|721374_721821_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|722608_724840_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|724862_725663_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|725944_727177_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|727287_728277_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|728307_729696_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|731294_732278_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|732474_733491_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	870159	974462	4122636	tail,protease,transposase,tRNA,terminase	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005013747.1|870159_871110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|871110_871680_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|871747_872563_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|872729_874349_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|874427_875369_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|875368_876253_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|876256_877909_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|877948_879346_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|879387_880767_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|880806_881025_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|881365_882238_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|882397_883348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|884079_884457_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|884441_885143_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|885286_885979_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|885978_887082_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|887191_889564_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|889560_891120_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|891144_891942_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|891973_893119_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|893223_894666_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|894668_895898_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|898035_898986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|900115_900673_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|900648_900999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|901167_901962_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|901958_903008_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|903007_903697_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|903783_904281_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|904312_905629_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|905645_906620_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|906656_907115_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|907114_907795_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|907797_908226_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|908278_910009_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|910074_910647_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|910627_911314_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|911669_912341_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|912669_912891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|912890_913172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|913168_913684_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|913683_914235_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|914213_914456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|914460_915273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|915272_915536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|915576_915774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|915754_916171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|916175_920132_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|920124_920514_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|920510_921044_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|921111_921471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|921480_924093_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|924118_924409_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|924426_924756_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|924765_925284_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|925538_926039_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|926046_926469_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|926465_926864_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|926860_927256_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|927255_927444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|927457_927940_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|928002_928254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|928928_929879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|930307_930910_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|931032_931275_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|931280_932336_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|932364_933783_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|933785_935063_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|935049_935535_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|936174_937125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|937381_938071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|938063_938315_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|938869_939481_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|939552_939759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|940010_940961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|941059_942133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|942300_943095_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|943134_943659_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|943651_945394_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|945603_946362_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|946364_947072_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|947088_947970_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|947980_948739_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|948707_949463_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|949532_950951_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|950972_951623_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|951756_952092_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|952180_953131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|953207_955028_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|955032_956106_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|956228_957197_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|957270_958182_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|958200_958773_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|958853_959402_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|959401_960991_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|961060_961300_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|961340_962366_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|962431_963613_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|963709_964162_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|964171_965512_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|965828_966866_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|967247_967607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|967690_968632_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|968706_969657_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|969950_971045_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|971126_972008_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|972029_972869_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|972944_974462_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 7
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	1270176	1403102	4122636	transposase,integrase,tRNA	uncultured_Mediterranean_phage(10.34%)	114	1314819:1314836	1359459:1359476
WP_005013747.1|1270176_1271127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|1271123_1271759_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|1271888_1272788_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|1272883_1273375_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|1273421_1274387_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|1275520_1276762_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|1276875_1277892_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|1277926_1278403_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|1278545_1279454_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|1279567_1280680_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_003818475.1|1280780_1281314_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|1281402_1282653_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|1282754_1283267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|1283365_1284316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|1284381_1285320_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|1285342_1285969_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|1285965_1286622_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|1286618_1287221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|1287227_1287815_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|1287995_1288565_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|1288635_1289955_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|1290061_1290253_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|1290504_1291794_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|1291948_1292944_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|1293028_1293703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1293699_1294650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|1294811_1296053_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|1296049_1296994_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|1297112_1298063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|1298022_1298952_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|1299005_1299341_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|1299385_1300150_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|1300173_1300914_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|1300921_1302475_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|1302509_1303487_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|1303759_1304341_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|1304392_1311295_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|1311741_1311873_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|1312138_1312345_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|1313349_1314009_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|1314036_1315182_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
1314819:1314836	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|1315322_1315658_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|1315732_1316593_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|1316856_1317558_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|1317727_1318123_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1318232_1319183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|1319193_1319835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|1320001_1320244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|1320342_1321293_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|1321328_1321796_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|1322029_1322407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|1322403_1322586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|1322589_1323576_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|1323572_1324220_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|1324277_1324805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|1324841_1326026_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|1326036_1326378_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|1326490_1326691_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|1326687_1327677_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|1329163_1331134_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|1331375_1331774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|1331782_1332706_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1333163_1334114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|1334344_1336036_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|1336084_1336357_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|1336353_1336725_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|1336820_1336955_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|1337360_1338770_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|1338772_1339882_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|1339976_1342430_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|1342548_1343340_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|1343459_1344887_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|1344925_1345897_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|1346315_1347479_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|1347566_1348412_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1349968_1350919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|1351473_1351848_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|1351922_1352981_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|1353004_1353955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|1356836_1358006_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|1358106_1359714_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
1359459:1359476	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|1359760_1361782_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|1361810_1362056_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|1362069_1363260_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|1363455_1364421_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|1364443_1365583_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|1365794_1366757_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|1366880_1368905_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|1369101_1371345_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|1371623_1372082_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|1373009_1375631_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|1375694_1378322_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|1378473_1379538_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|1379537_1380308_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|1380316_1381150_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|1381162_1381942_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|1382015_1383449_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|1383476_1384235_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|1384290_1386141_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|1386234_1386711_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|1386727_1387648_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|1387754_1388255_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|1388628_1389321_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|1389629_1390580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|1390576_1394350_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|1394686_1396576_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|1396587_1397481_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|1397584_1398382_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|1398378_1399230_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|1399291_1399972_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|1400008_1400335_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|1400335_1401295_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|1401315_1401804_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|1402085_1403102_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	1592318	1645750	4122636	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|1592318_1593269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|1593438_1594665_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|1594864_1595731_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|1595723_1596686_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|1596786_1597737_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1597835_1598786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1598884_1599835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|1599831_1601325_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|1601321_1604429_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|1604425_1607494_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|1607490_1608741_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|1608921_1609683_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|1609715_1610366_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|1610368_1611208_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|1611448_1612192_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|1612274_1612622_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|1612719_1613562_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|1613606_1614494_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|1614520_1614709_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|1614806_1616264_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|1616250_1617777_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|1617795_1618263_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|1618262_1619285_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|1619405_1620125_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|1620200_1621301_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|1621302_1622493_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|1622612_1623629_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|1623947_1624619_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|1624615_1625524_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|1625735_1626383_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|1630234_1631311_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|1631321_1632131_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|1632220_1632994_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853639.1|1633176_1634127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077598841.1|1634015_1635038_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|1635027_1636182_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|1636221_1637634_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|1637758_1638625_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|1638626_1639451_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|1639447_1640209_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|1640289_1640976_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|1641149_1642157_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|1642153_1642933_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|1642990_1644253_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|1644799_1645750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	1697429	1740182	4122636	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|1697429_1698380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|1698461_1698797_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|1698821_1699256_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|1699288_1700506_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|1700511_1701009_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|1701216_1702152_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|1702361_1703153_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|1703195_1704617_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|1704772_1705723_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|1705719_1706910_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|1707159_1708071_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_145957709.1|1708092_1710210_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|1710206_1710746_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|1710749_1711478_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|1711464_1712358_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|1712428_1712824_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|1712833_1713364_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|1713809_1714760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|1715346_1715895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|1715866_1716103_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|1716230_1717124_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|1718293_1719541_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|1719537_1720152_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|1720287_1721238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|1721280_1722537_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|1723768_1724503_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|1724508_1725099_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|1725123_1725813_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|1725809_1726571_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|1726650_1727550_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|1727643_1728594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|1729394_1730621_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|1730620_1731034_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|1731223_1732165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|1732588_1733563_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|1733619_1734201_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|1734213_1734516_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|1734634_1735693_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|1735727_1736999_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|1737628_1738810_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|1739231_1740182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	1747780	1806254	4122636	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|1747780_1748731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|1748805_1749750_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|1749746_1751621_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|1752968_1753673_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|1753669_1754776_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|1755037_1755631_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|1755627_1756815_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|1756877_1758137_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|1758160_1759249_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|1759256_1760357_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|1760360_1760936_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|1760939_1761992_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|1762122_1763130_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|1763131_1764418_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|1764434_1764590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|1764614_1765418_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|1765414_1766281_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|1766355_1767486_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|1767485_1768325_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|1769257_1769860_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|1769889_1770543_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|1770675_1771932_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|1771979_1772879_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|1772954_1773230_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|1773237_1773900_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|1773961_1774963_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|1774977_1775526_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|1775583_1776480_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|1776476_1777538_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|1777573_1778524_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|1779423_1780617_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|1780698_1781328_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|1781389_1782073_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|1782082_1783765_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|1784052_1784400_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|1784490_1784808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|1785090_1786107_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|1786182_1786983_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|1786979_1787855_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|1787865_1789158_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|1789200_1790241_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|1790346_1791168_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|1791268_1792219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|1792317_1793223_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|1793219_1794053_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|1794889_1795900_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|1795896_1796286_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|1797179_1798433_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|1798523_1800224_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|1800650_1801298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|1801296_1802736_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|1802828_1803131_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|1803158_1804037_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1805303_1806254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	1835038	1895549	4122636	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|1835038_1835989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|1837432_1838335_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|1838312_1838942_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|1839224_1840655_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|1840688_1841318_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|1841366_1842974_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|1842998_1843682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|1843763_1844240_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|1844446_1845397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|1846512_1847040_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|1847131_1847947_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|1848007_1848742_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|1848779_1850858_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|1851107_1851380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|1851481_1852567_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|1852570_1854475_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|1854471_1858146_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|1858206_1858770_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|1858777_1859200_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|1859227_1859647_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|1859675_1860149_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|1860248_1860746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|1860900_1863171_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|1863219_1864452_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|1864550_1865501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|1865603_1866239_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|1866235_1867129_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|1867523_1868624_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|1868705_1869080_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|1869139_1872004_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|1872148_1872889_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|1872958_1874170_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|1874198_1875167_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1875780_1876731_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|1876887_1877211_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|1877315_1878356_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|1878361_1879141_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|1879186_1879483_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|1879508_1879784_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|1879840_1880485_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|1880484_1881171_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|1881300_1882152_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|1882202_1882928_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|1882959_1884309_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|1884420_1885353_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446321.1|1885810_1888606_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|1889199_1892142_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|1892213_1892933_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|1892971_1893520_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|1893674_1894574_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|1894598_1895549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	1903481	1957071	4122636	protease,transposase,tRNA	Bacillus_phage(25.0%)	46	NA	NA
WP_005012067.1|1903481_1904432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1904518_1905469_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|1905465_1906416_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|1906514_1907312_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|1908261_1908672_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|1909693_1910437_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|1910480_1911524_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|1911694_1913797_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|1915207_1916164_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|1916182_1916674_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|1916670_1918026_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|1918026_1918725_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|1918721_1919423_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|1919675_1920725_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|1920830_1921772_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|1921768_1923658_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|1923744_1924383_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|1924525_1925911_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|1925841_1926378_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|1926529_1927921_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|1927937_1928918_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|1929053_1930037_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|1930101_1931001_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|1931107_1932862_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|1932869_1933994_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|1934007_1934988_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929712.1|1937229_1937775_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|1937858_1939478_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|1939493_1940648_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|1940661_1940787_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|1940783_1942535_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|1942531_1944211_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|1944273_1944822_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|1945964_1946243_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1947286_1948237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|1948515_1948677_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|1948684_1948825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|1949343_1949793_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|1949802_1950414_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|1950572_1951427_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|1951446_1952829_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|1952893_1953535_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|1953674_1954133_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|1954157_1954934_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|1954987_1956124_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|1956120_1957071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	2225456	2284756	4122636	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|2225456_2226407_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|2227730_2228507_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|2228541_2230314_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|2230315_2231218_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|2231342_2231702_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|2231733_2232696_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_010929591.1|2232794_2233745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|2233757_2234693_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|2234752_2235592_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|2235588_2236758_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|2236754_2238044_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|2238086_2238461_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|2238566_2239304_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|2239311_2240016_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|2240279_2241800_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|2241855_2242419_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|2242437_2243469_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|2243465_2244254_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|2244274_2244433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|2244429_2245419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2247175_2248126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|2249348_2250251_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|2250252_2251107_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|2251153_2252263_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|2252273_2252792_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|2252821_2253454_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|2253525_2254185_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|2254181_2255402_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|2255670_2256543_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|2256698_2257436_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|2257438_2259070_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|2259165_2260155_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|2260151_2260862_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|2260957_2261974_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|2262245_2262872_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|2262927_2264055_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|2264060_2269778_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|2270345_2271290_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|2271478_2272414_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|2272531_2274103_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|2274182_2275391_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|2275888_2276806_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|2279166_2279388_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|2279718_2280735_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|2280819_2281071_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|2281074_2281890_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|2282002_2282881_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|2282992_2284756_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 15
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	2343700	2421009	4122636	protease,transposase,integrase,tRNA	Bacillus_phage(20.0%)	57	2390837:2390855	2410725:2410743
WP_023995489.1|2343700_2344651_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|2344749_2346225_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|2347812_2348700_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|2348702_2349644_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|2349689_2351255_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|2353032_2354358_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|2354540_2355998_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|2355961_2356459_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|2356489_2357461_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|2357513_2357951_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|2358074_2358743_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|2359471_2360575_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_171024626.1|2360677_2361955_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|2361966_2362992_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|2362993_2364364_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|2364364_2365501_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|2365547_2367473_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|2367469_2368591_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|2368587_2369742_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|2369738_2370869_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|2370876_2372442_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|2372448_2373831_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|2374109_2374721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|2374812_2376228_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|2376245_2376956_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|2376952_2378275_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|2378354_2380316_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|2380441_2381755_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|2381863_2383162_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|2383344_2384253_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|2384262_2384472_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|2384483_2386163_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|2386264_2387218_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|2387308_2388136_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|2388134_2390021_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|2390017_2390617_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|2390665_2391565_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
2390837:2390855	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|2391773_2392724_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|2392846_2393461_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|2393589_2394186_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|2394182_2394965_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|2395037_2396129_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|2396408_2397536_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|2397877_2398924_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|2399071_2402191_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|2402192_2405144_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|2405159_2406371_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|2406554_2407505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|2407521_2408016_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|2408019_2408277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|2408820_2409732_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|2409813_2410098_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|2410881_2411832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
2410725:2410743	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|2412250_2414815_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|2414859_2416713_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|2417045_2418617_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2420058_2421009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	2667994	2770387	4122636	tRNA,transposase	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|2667994_2669110_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|2669210_2670029_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|2670126_2670738_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|2670897_2672274_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|2672336_2672795_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|2672879_2673575_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|2673636_2673918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|2674480_2675233_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|2675277_2676354_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|2676350_2677301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|2677403_2678066_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|2678160_2678331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|2678683_2679685_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|2679687_2680884_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|2680904_2681708_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|2681788_2682085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|2682115_2682679_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|2682719_2683577_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|2683584_2684334_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|2684355_2685228_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|2685256_2686036_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|2686069_2686867_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|2689521_2689914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|2689907_2690768_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|2690771_2691734_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|2692510_2693200_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|2694060_2695011_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|2695360_2696230_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|2696300_2696996_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|2696985_2697495_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|2697491_2698712_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|2698659_2699562_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|2700448_2701735_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|2701773_2703147_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|2703185_2703887_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|2704185_2705175_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|2705275_2705737_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|2705752_2706301_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|2706442_2707918_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|2708023_2709115_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|2709118_2709901_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|2709910_2710699_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|2711824_2712259_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|2712255_2713266_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|2713309_2714236_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|2714522_2714891_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|2715107_2716058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|2716102_2718529_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|2718577_2719270_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|2719342_2720542_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|2720559_2721465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|2721580_2722510_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|2722535_2723882_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|2723909_2724659_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|2724672_2725455_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|2725647_2726598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|2726659_2727769_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|2728281_2729118_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|2729187_2730153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2730149_2731100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2731485_2732028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2733063_2734014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|2734255_2734624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|2734669_2735794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|2736928_2737681_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|2737772_2738393_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|2738496_2739447_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|2739443_2741552_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|2741696_2742356_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|2742387_2742852_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|2743127_2743313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|2743364_2744117_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|2744123_2745386_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003820806.1|2747743_2748871_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|2748881_2749709_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|2749695_2750562_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|2751928_2752333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2752424_2753375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|2753744_2754656_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|2754670_2755381_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|2755377_2756622_+	aconitase X catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|2756623_2757058_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|2757086_2757392_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|2757490_2758441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2758497_2759652_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|2759726_2760677_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|2761208_2762006_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|2762053_2762707_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|2762663_2763752_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|2763916_2766142_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|2768419_2769316_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|2769436_2770387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	2800772	2871743	4122636	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|2800772_2801723_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2801779_2802892_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|2805275_2806226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|2806816_2807593_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|2807710_2807974_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|2808074_2809079_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|2809279_2810881_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|2810906_2811665_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|2811756_2812413_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|2812503_2813268_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|2813277_2813466_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|2813521_2814565_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|2814561_2814975_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|2814971_2815592_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|2815872_2816823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|2816990_2818382_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|2818454_2819033_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|2819149_2820547_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|2820662_2821868_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|2821967_2822486_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|2822580_2822826_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|2823053_2823368_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|2823457_2828647_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|2828643_2830812_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|2830867_2833183_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|2833187_2834507_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|2834525_2836199_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|2836203_2836872_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|2837028_2840850_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|2841180_2842131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|2842152_2843298_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2843446_2844376_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|2844372_2845461_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|2845457_2846261_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|2846257_2846989_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|2847046_2848336_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|2848432_2849035_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|2853588_2853927_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|2854634_2854901_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|2856607_2857558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|2857554_2858886_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|2860146_2862147_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|2862139_2862781_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|2862777_2863185_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|2863181_2863982_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|2864056_2864761_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|2864792_2865587_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|2865583_2866534_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|2866632_2867583_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|2867681_2868116_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|2868198_2870535_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|2870726_2871743_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	2912814	2994949	4122636	transposase,tRNA	Bacillus_virus(28.57%)	60	NA	NA
WP_010929591.1|2912814_2913765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|2913852_2915505_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|2915515_2916304_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|2916303_2916774_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|2916848_2918162_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|2918215_2918821_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|2919137_2920088_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2920084_2921035_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|2921295_2922324_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|2922403_2923702_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|2923698_2924280_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|2924592_2928639_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_005012067.1|2936536_2937487_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|2938626_2939100_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|2939239_2939860_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|2939995_2940796_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|2940850_2941942_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|2941963_2942407_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|2942435_2943068_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|2943178_2943595_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|2943587_2944280_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|2944386_2944761_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|2944837_2945647_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|2945742_2946687_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|2946725_2947697_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|2947787_2948225_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|2948283_2949165_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|2950168_2951029_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|2951061_2952444_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|2952440_2953460_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|2953832_2954327_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|2954334_2955075_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|2955155_2956760_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|2956799_2957588_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|2958790_2959879_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|2960759_2961572_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|2961584_2961893_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|2962010_2963741_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|2963742_2964888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|2965017_2965686_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|2965807_2966275_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|2966410_2967793_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|2967789_2968914_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|2968910_2971547_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|2971962_2972913_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|2976659_2977271_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|2977493_2978954_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|2979050_2980643_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|2980996_2981254_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2981255_2982596_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|2982691_2983381_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2983393_2984824_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|2986548_2987370_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|2987380_2988952_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|2988980_2989958_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|2989984_2990788_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|2990784_2991579_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|2991586_2992822_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|2992814_2993249_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2993998_2994949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	3413354	3470633	4122636	transposase,tRNA	Klosneuvirus(15.38%)	49	NA	NA
WP_010930522.1|3413354_3414305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|3414403_3417004_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|3417110_3418115_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|3418223_3419564_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|3419604_3420633_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|3420828_3421374_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|3421370_3421931_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|3422029_3422980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|3423017_3423605_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|3423622_3424006_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|3425365_3426658_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|3426792_3427833_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|3427930_3428947_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|3429214_3429862_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|3429987_3430746_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|3430730_3431510_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|3431527_3432412_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|3432408_3433188_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|3433292_3433892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|3434180_3434933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|3435051_3436452_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|3436475_3436874_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|3437049_3437250_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|3437388_3438117_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|3438250_3439666_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|3439669_3440533_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|3440545_3441295_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|3441477_3443493_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|3443474_3444143_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|3444917_3445868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|3446016_3446355_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|3446412_3446574_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|3446605_3446806_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|3447071_3449645_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|3449715_3452265_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|3454815_3455304_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|3455395_3456547_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|3456600_3457422_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|3457460_3458690_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|3458818_3459259_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|3459369_3460320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|3460316_3460790_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|3460951_3461890_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|3461891_3463100_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|3463204_3463711_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|3463713_3466575_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|3466564_3467530_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930544.1|3468282_3469584_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|3469682_3470633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	3521881	3592341	4122636	protease,transposase,tRNA	Klosneuvirus(22.22%)	60	NA	NA
WP_005013747.1|3521881_3522832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|3522956_3523766_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|3523966_3524917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|3526190_3527408_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|3528464_3529367_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|3529443_3530316_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|3530446_3530815_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|3530872_3531919_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|3532114_3533371_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|3533375_3534713_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|3534862_3535819_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|3535921_3536854_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|3536969_3537290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|3537282_3537642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|3537689_3539264_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|3539316_3540261_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|3540278_3541109_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|3541101_3542736_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|3542732_3544088_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|3544994_3546572_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|3546575_3547850_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|3547947_3548322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|3550037_3551171_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|3551208_3551814_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|3551810_3552629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|3552700_3555325_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|3555311_3555566_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|3555632_3556214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|3556517_3556778_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|3556943_3557567_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|3557566_3558340_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|3558336_3559545_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|3559570_3560044_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|3560117_3561068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|3562214_3563564_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|3564329_3565085_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|3565177_3568060_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|3568382_3568808_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|3568835_3569984_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|3569980_3570487_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|3570493_3571789_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|3571847_3573134_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|3573135_3573774_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_077069010.1|3573776_3574937_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|3574963_3576319_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|3576322_3577393_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|3577531_3577768_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|3577855_3578962_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|3578927_3580232_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|3580250_3581150_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|3581333_3582491_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|3582567_3583863_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|3583976_3584516_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|3584793_3585006_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|3585025_3587056_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|3587081_3587276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|3587741_3590024_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|3590433_3590733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|3591017_3591431_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|3591390_3592341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	3603545	3652947	4122636	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_005012067.1|3603545_3604496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|3604492_3605767_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|3605870_3607064_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|3607060_3607714_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|3607710_3609147_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|3609134_3609494_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|3610308_3610449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3610466_3611417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|3612462_3614328_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|3614585_3616106_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|3616193_3616844_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|3617792_3619088_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|3619109_3619994_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|3620092_3620968_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|3620957_3621314_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|3621444_3622419_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|3622548_3622728_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|3622825_3623350_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|3623360_3624197_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|3624309_3624681_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|3624677_3625229_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|3625244_3626936_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|3626984_3627665_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|3627912_3628377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|3628546_3629476_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|3629488_3630136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|3630209_3632027_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|3632110_3633061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|3633713_3634664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|3634682_3635030_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|3635058_3636498_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|3636516_3636912_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|3637086_3637695_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|3637707_3638526_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|3638477_3639452_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|3639480_3640542_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|3640538_3642755_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|3642768_3643227_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|3643384_3643729_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|3643885_3644791_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|3644877_3645891_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|3647870_3648887_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|3649029_3650382_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|3650556_3650853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3651996_3652947_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	3664443	3728812	4122636	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|3664443_3665394_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|3665615_3666566_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|3666664_3667630_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|3667767_3668667_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|3671261_3672749_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|3672759_3673956_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|3674028_3675348_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|3675344_3676220_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|3676250_3677399_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|3677416_3677731_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|3677752_3678475_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|3678474_3679293_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|3679297_3679825_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|3679830_3681087_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|3681445_3682585_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|3682662_3683535_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_005013747.1|3684405_3685356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|3685315_3685951_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|3686310_3687633_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|3687951_3688773_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|3690197_3690770_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|3690809_3692639_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|3692601_3693660_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|3693697_3694159_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|3694243_3694990_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|3696480_3699711_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|3699777_3701109_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|3701361_3701736_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|3701838_3703017_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|3703027_3703618_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|3703728_3704535_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|3704560_3705355_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|3706355_3707330_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|3707488_3708001_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|3708157_3709129_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|3710873_3711680_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|3711676_3712978_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|3712928_3713693_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|3713806_3714577_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|3714661_3715849_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|3715921_3716296_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|3716396_3717659_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|3717655_3718513_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|3718685_3719687_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3720138_3721089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|3722604_3723804_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|3724172_3724409_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|3724472_3724640_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|3724753_3726559_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|3726812_3727763_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|3727861_3728812_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	3854279	3946249	4122636	transposase,tRNA	Tupanvirus(14.29%)	59	NA	NA
WP_010929632.1|3854279_3855296_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930633.1|3855689_3856955_-	aspartate kinase	NA	NA	NA	NA	NA
WP_010930632.1|3857054_3858020_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_023997643.1|3858149_3859100_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810007.1|3859198_3860164_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_003820119.1|3860200_3860845_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_010930630.1|3860864_3862325_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_010930629.1|3862564_3863248_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003809999.1|3863376_3863886_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_019247344.1|3863878_3864655_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_010930627.1|3864862_3865726_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_003809992.1|3865750_3867337_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930626.1|3867463_3868246_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_010930625.1|3868353_3869130_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930624.1|3869347_3870340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930623.1|3870501_3871260_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003809983.1|3871273_3872107_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930622.1|3873266_3874298_+	peptidase C45	NA	NA	NA	NA	NA
WP_010930621.1|3874311_3877935_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930620.1|3878013_3878526_-	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_019247163.1|3879700_3880402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930618.1|3880422_3881388_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010930617.1|3881401_3881893_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|3883449_3884424_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930615.1|3884430_3884931_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930614.1|3886248_3888003_-	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_019247160.1|3887995_3889126_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930612.1|3889106_3891728_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_010930611.1|3891790_3892525_-	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930609.1|3904485_3905115_+	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_014486076.1|3905123_3908840_+	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_003816497.1|3908883_3909759_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930607.1|3909892_3910687_-	putative hydro-lyase	NA	NA	NA	NA	NA
WP_010930606.1|3910744_3912094_-	amidase	NA	NA	NA	NA	NA
WP_005013747.1|3915279_3916230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|3916346_3917066_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|3917238_3918225_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|3918225_3918708_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|3918711_3919995_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|3919991_3920930_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|3920926_3922636_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|3922645_3923893_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|3925503_3926793_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|3927930_3928689_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|3929365_3930109_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|3930183_3930924_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|3931119_3931956_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|3932006_3932777_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|3932826_3933879_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|3933875_3934502_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|3934498_3935533_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|3935711_3936728_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|3936826_3937777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3937875_3938826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|3941566_3942856_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|3942974_3943412_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|3943455_3944664_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|3944810_3945275_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|3945298_3946249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	3957629	4020170	4122636	tRNA,transposase	Pandoravirus(20.0%)	54	NA	NA
WP_004568494.1|3957629_3958136_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|3958128_3958977_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|3959074_3959617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3959660_3960611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|3960766_3961093_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|3961089_3961374_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|3961370_3961850_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|3961846_3963475_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|3963471_3963816_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|3963815_3966749_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|3967907_3968858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|3968956_3969253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|3969359_3970277_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|3970281_3970995_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|3971008_3971980_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|3973699_3974080_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|3974083_3975271_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|3975694_3976432_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|3976725_3977676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249376.1|3977672_3978101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811538.1|3979502_3980465_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|3980580_3981534_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930501.1|3981543_3982536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930500.1|3982587_3983343_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930499.1|3983407_3984097_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930498.1|3984318_3985269_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930497.1|3985299_3986496_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_019247910.1|3986486_3987266_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247909.1|3987378_3988305_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930494.1|3988390_3989335_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930493.1|3989312_3990182_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930492.1|3990425_3991049_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_019247905.1|3991363_3991663_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023995112.1|3991676_3994751_-	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930489.1|3994880_3995555_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019247865.1|3995547_3997362_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930487.1|3997415_3998363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3998467_3999418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|3999970_4001596_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|4001645_4002680_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|4002682_4004029_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|4004025_4005540_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|4005530_4006541_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|4007014_4007956_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|4007964_4008933_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|4010472_4011441_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|4011618_4012608_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|4012654_4013413_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|4013602_4014340_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|4014438_4015389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|4015573_4016356_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|4016349_4017051_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|4017290_4017893_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|4019219_4020170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_LT906484	Bordetella pertussis strain NCTC13667 chromosome 1	4122636	4059447	4112561	4122636	transposase	Ectocarpus_siliculosus_virus(12.5%)	48	NA	NA
WP_005012067.1|4059447_4060398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|4060417_4061323_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|4061400_4062099_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|4062258_4063203_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|4063212_4064700_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|4064699_4065767_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|4065830_4067243_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|4067428_4068649_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|4068670_4069621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930449.1|4069719_4070361_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|4070487_4072290_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|4073941_4074847_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|4075028_4076405_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|4076571_4077312_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|4077448_4078375_+	YicC family protein	NA	NA	NA	NA	NA
WP_010930445.1|4078647_4078803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926696.1|4078940_4079225_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|4079283_4080774_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|4081018_4081618_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|4081622_4082393_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|4082630_4083344_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|4083340_4084258_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930442.1|4084393_4085026_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930441.1|4085067_4085271_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|4085295_4087575_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|4087587_4088316_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|4088312_4088972_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|4089040_4089793_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|4089974_4090925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446216.1|4091817_4092723_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010930437.1|4092734_4093862_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_019248658.1|4093950_4094565_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930435.1|4095222_4096410_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|4096406_4099004_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|4099258_4099474_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|4099929_4100484_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930431.1|4100751_4101312_+	membrane protein	NA	NA	NA	NA	NA
WP_023853587.1|4101423_4102728_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|4102724_4104236_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019248041.1|4104341_4105343_+	imelysin family protein	NA	NA	NA	NA	NA
WP_019249265.1|4105332_4106445_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|4106543_4107494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|4107490_4108117_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|4108176_4109028_+	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010930426.1|4109131_4109731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|4109727_4110492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|4110561_4111512_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|4111610_4112561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
