The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT906444	Listeria welshimeri strain NCTC11857 chromosome 1	2814137	270069	279435	2814137		Enterococcus_phage(33.33%)	9	NA	NA
WP_011701109.1|270069_270912_-	MBL fold metallo-hydrolase	NA	Q0H255	Geobacillus_phage	63.9	4.6e-89
WP_011701110.1|270928_271750_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_011701111.1|271946_273047_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	39.2	2.9e-19
WP_011701112.1|273336_275487_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	62.6	5.7e-261
WP_011701113.1|275479_276031_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	3.5e-53
WP_011701114.1|276126_276798_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_011701115.1|276890_277670_-	carbon-nitrogen family hydrolase	NA	M1I6H3	Paramecium_bursaria_Chlorella_virus	24.4	8.7e-10
WP_011701116.1|277759_278422_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011701117.1|278418_279435_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.4	1.3e-29
>prophage 2
NZ_LT906444	Listeria welshimeri strain NCTC11857 chromosome 1	2814137	1181558	1275832	2814137	tRNA,capsid,plate,head,terminase,integrase,holin,tail,protease,portal	Listeria_phage(54.24%)	105	1207270:1207286	1246291:1246307
WP_011701990.1|1181558_1182611_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.9	1.3e-29
WP_011701991.1|1182610_1185019_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_011701992.1|1185191_1185893_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.4	1.2e-34
WP_011701993.1|1185906_1189317_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_011701994.1|1189411_1189864_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011701995.1|1189879_1193080_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_011701996.1|1193185_1193860_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.7	2.0e-50
WP_041176334.1|1193897_1194824_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_011701998.1|1194978_1195242_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_011701999.1|1195241_1195784_+	CvpA family protein	NA	NA	NA	NA	NA
WP_011702000.1|1195875_1197588_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.5	1.9e-17
WP_011702001.1|1197610_1199968_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	48.7	7.4e-20
WP_011702002.1|1200048_1200360_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	39.6	7.0e-19
WP_011702003.1|1200435_1202247_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_011702004.1|1202440_1203655_+	aspartate kinase	NA	NA	NA	NA	NA
WP_077904715.1|1203722_1204217_-	YslB family protein	NA	NA	NA	NA	NA
WP_011702006.1|1204363_1205164_+	glutamate racemase	NA	NA	NA	NA	NA
WP_011702007.1|1205176_1205923_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_011702008.1|1205926_1206538_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_011702009.1|1206576_1207101_+	metallophosphoesterase	NA	NA	NA	NA	NA
1207270:1207286	attL	AATCCCTCTCAGGACGT	NA	NA	NA	NA
WP_011702010.1|1207421_1208555_-|integrase	tyrosine-type recombinase/integrase	integrase	A8ATC7	Listeria_phage	50.5	9.8e-95
WP_041176335.1|1208682_1208982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011702011.1|1209387_1209861_-	helix-turn-helix transcriptional regulator	NA	Q8W5Y0	Listeria_phage	49.1	7.9e-22
WP_011702012.1|1210127_1210319_+	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	90.5	5.4e-22
WP_011702013.1|1210354_1210597_+	hypothetical protein	NA	A8ATD2	Listeria_phage	65.0	1.5e-24
WP_009929542.1|1211029_1211182_+	hypothetical protein	NA	A8ATD4	Listeria_phage	100.0	1.5e-19
WP_011702014.1|1211489_1211765_+	hypothetical protein	NA	A0A059T7V3	Listeria_phage	85.3	3.3e-36
WP_041176433.1|1211785_1212499_+	SAM-dependent DNA methyltransferase	NA	A8ATD5	Listeria_phage	96.2	2.7e-127
WP_011702016.1|1212509_1213454_+|integrase	site-specific integrase	integrase	A8ATD6	Listeria_phage	97.1	3.2e-176
WP_011702017.1|1213466_1214153_+	hypothetical protein	NA	A8ATD7	Listeria_phage	91.6	6.8e-115
WP_011702018.1|1214142_1214709_+	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	43.1	1.8e-33
WP_011702019.1|1214705_1215149_+	hypothetical protein	NA	A8ASP1	Listeria_phage	89.8	3.1e-44
WP_011702020.1|1215145_1215667_+	hypothetical protein	NA	A8ASP2	Listeria_phage	93.1	1.8e-88
WP_011702021.1|1216027_1216225_+	hypothetical protein	NA	A8ASP4	Listeria_phage	74.6	2.0e-19
WP_041176338.1|1216231_1216663_+	hypothetical protein	NA	A8ATS7	Listeria_phage	51.7	2.7e-37
WP_011702022.1|1216674_1216899_+	hypothetical protein	NA	A0A1W6JL35	Lactococcus_phage	43.7	6.8e-08
WP_011702023.1|1216895_1217069_+	hypothetical protein	NA	A0A059T5G3	Listeria_phage	98.2	2.0e-23
WP_011702024.1|1217065_1217449_+	hypothetical protein	NA	A8ATE8	Listeria_phage	81.9	1.6e-52
WP_003743933.1|1217450_1217930_+	siphovirus Gp157 family protein	NA	Q8W5W1	Listeria_phage	100.0	5.4e-79
WP_003743935.1|1217942_1218632_+	AAA family ATPase	NA	A0A059T7T3	Listeria_phage	100.0	2.6e-130
WP_011702026.1|1218695_1219952_+	DEAD/DEAH box helicase	NA	Q8W5V9	Listeria_phage	94.7	2.6e-229
WP_011702027.1|1219976_1220462_+	DUF669 domain-containing protein	NA	Q8W5V8	Listeria_phage	99.4	1.4e-87
WP_011702028.1|1220484_1222827_+	DNA primase	NA	A0A059T6A4	Listeria_phage	43.2	1.3e-146
WP_011702029.1|1223121_1223448_+	VRR-NUC domain-containing protein	NA	Q8W5V6	Listeria_phage	97.1	1.0e-52
WP_011702030.1|1223469_1223850_+	DUF3310 domain-containing protein	NA	A0A059T7T5	Listeria_phage	51.1	6.1e-41
WP_003743945.1|1223850_1224276_+	DUF722 domain-containing protein	NA	Q8W5V4	Listeria_phage	100.0	2.3e-73
WP_011702031.1|1224925_1225300_+	HNH endonuclease	NA	C5J957	Streptococcus_phage	50.0	1.5e-23
WP_041176339.1|1225340_1225715_+|terminase	P27 family phage terminase small subunit	terminase	A0A0U4JV93	Exiguobacterium_phage	59.0	1.3e-24
WP_011702033.1|1225711_1227463_+|terminase	terminase large subunit	terminase	A6XMJ4	Bacillus_virus	73.9	6.7e-260
WP_011702034.1|1227476_1228658_+|portal	phage portal protein	portal	Q0H263	Geobacillus_phage	59.4	4.4e-130
WP_011702035.1|1228654_1229239_+|head,protease	HK97 family phage prohead protease	head,protease	Q0H262	Geobacillus_phage	51.1	1.2e-43
WP_041176434.1|1229292_1230414_+|capsid	phage major capsid protein	capsid	A0A2H4J3W9	uncultured_Caudovirales_phage	58.8	3.6e-89
WP_011702037.1|1230418_1230598_+	hypothetical protein	NA	A0A0S2SXV2	Bacillus_phage	57.1	3.4e-10
WP_011702038.1|1230597_1230885_+	hypothetical protein	NA	A6XMJ8	Bacillus_virus	63.5	4.3e-23
WP_011702039.1|1230871_1231177_+|head	phage head closure protein	head	Q0H236	Geobacillus_phage	51.0	1.3e-22
WP_011702040.1|1231183_1231537_+	hypothetical protein	NA	A0A290FZT5	Caldibacillus_phage	45.7	5.5e-20
WP_011702041.1|1231533_1231857_+	hypothetical protein	NA	A0A290GDX2	Caldibacillus_phage	47.6	3.1e-17
WP_011702042.1|1231857_1232439_+|tail	phage tail protein	tail	A0A2H4J534	uncultured_Caudovirales_phage	62.8	1.5e-62
WP_011702043.1|1232483_1232840_+	hypothetical protein	NA	D2XR24	Bacillus_phage	57.6	2.0e-30
WP_011702045.1|1233063_1236336_+|tail	phage tail tape measure protein	tail	D2XR25	Bacillus_phage	44.8	1.3e-78
WP_011702046.1|1236332_1237073_+	hypothetical protein	NA	Q8W5Z6	Listeria_phage	23.8	4.6e-08
WP_011702047.1|1237054_1239196_+|tail	phage tail protein	tail	R4IDV9	Listeria_phage	55.3	5.8e-213
WP_011702048.1|1239192_1240296_+|plate	BppU family phage baseplate upper protein	plate	Q8W5Z4	Listeria_phage	65.6	9.3e-98
WP_011702049.1|1240347_1240650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011702050.1|1240663_1240918_+|holin	phage holin	holin	Q8W5Y9	Listeria_phage	89.0	4.3e-35
WP_011702051.1|1240917_1241880_+	N-acetylmuramoyl-L-alanine amidase	NA	Q8W5Y8	Listeria_phage	53.8	2.0e-80
WP_011702052.1|1241903_1242320_+	hypothetical protein	NA	A0A0B5CTT3	Listeria_phage	45.7	1.0e-25
WP_148264570.1|1242414_1243665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110133446.1|1243760_1243955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011702055.1|1244486_1245023_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_011702056.1|1245038_1245680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011702057.1|1245829_1246063_+	hypothetical protein	NA	R4IDW6	Listeria_phage	90.9	2.9e-33
WP_011702060.1|1247169_1247850_-	hypothetical protein	NA	NA	NA	NA	NA
1246291:1246307	attR	AATCCCTCTCAGGACGT	NA	NA	NA	NA
WP_011702061.1|1247870_1248563_-	hypothetical protein	NA	A0A0B5D125	Listeria_phage	77.3	8.4e-81
WP_011702064.1|1249709_1250096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011702065.1|1250092_1250380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011702067.1|1250954_1251143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011702068.1|1251530_1252427_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011702069.1|1252659_1253253_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_011702070.1|1253395_1253803_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_011702071.1|1253968_1254568_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	42.1	3.4e-30
WP_011702072.1|1254598_1254859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011702073.1|1254981_1256394_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	3.3e-55
WP_011702074.1|1256417_1256681_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_011702075.1|1256847_1257324_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_011702076.1|1257365_1257611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011702077.1|1257607_1258813_-	MFS transporter	NA	NA	NA	NA	NA
WP_011702078.1|1259015_1259675_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_011702079.1|1259714_1259909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011702080.1|1259974_1260820_-	YitT family protein	NA	NA	NA	NA	NA
WP_003761913.1|1261148_1261286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011702081.1|1261435_1262149_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_011702082.1|1262180_1263827_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_011702083.1|1263845_1265330_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_011702084.1|1265444_1265900_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_011702085.1|1265941_1266406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011702086.1|1266594_1267509_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011702087.1|1267529_1268777_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	53.0	1.1e-107
WP_011702088.1|1268760_1269591_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.8	5.6e-47
WP_011702089.1|1269720_1270860_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_011702090.1|1270939_1271335_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	55.9	3.0e-14
WP_011702091.1|1271485_1271701_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011702092.1|1272050_1272989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011702093.1|1273103_1274387_+	trigger factor	NA	NA	NA	NA	NA
WP_011702094.1|1274572_1275832_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.7	1.5e-144
>prophage 3
NZ_LT906444	Listeria welshimeri strain NCTC11857 chromosome 1	2814137	2456650	2464478	2814137		Streptococcus_phage(50.0%)	7	NA	NA
WP_011703156.1|2456650_2457622_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_011703157.1|2457629_2458598_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	42.9	1.9e-67
WP_011703158.1|2458599_2459475_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.7e-09
WP_011703159.1|2459583_2461314_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	1.7e-175
WP_011703160.1|2461341_2462403_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_011703161.1|2462418_2463402_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.3	3.4e-51
WP_011703162.1|2463518_2464478_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.4	3.4e-88
>prophage 4
NZ_LT906444	Listeria welshimeri strain NCTC11857 chromosome 1	2814137	2734088	2744117	2814137		Tupanvirus(33.33%)	6	NA	NA
WP_011703393.1|2734088_2736242_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	34.4	6.7e-44
WP_011703394.1|2736265_2738038_-	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	38.7	2.2e-80
WP_011703395.1|2738198_2739665_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	6.1e-97
WP_011703396.1|2739948_2740479_-	ADP-ribose-binding protein	NA	A0A0K1L687	Scale_drop_disease_virus	44.1	1.4e-27
WP_011703397.1|2740536_2742147_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.1	3.7e-47
WP_011703398.1|2742662_2744117_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	30.1	3.3e-50
