The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT906462	Staphylococcus stepanovicii strain NCTC13839 chromosome 1	2439098	896262	907796	2439098		Staphylococcus_phage(100.0%)	11	NA	NA
WP_095087254.1|896262_897666_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	48.6	1.4e-122
WP_095087256.1|897652_898663_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	38.7	3.0e-63
WP_095087258.1|898719_898947_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	70.3	1.4e-24
WP_095087261.1|898957_899743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095087263.1|899811_900276_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	50.6	4.2e-36
WP_095090095.1|900283_901030_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	55.9	8.8e-76
WP_095087265.1|901164_902766_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	68.9	6.2e-220
WP_095087267.1|903164_904355_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	79.4	4.2e-181
WP_095087269.1|904579_905491_+	DUF4834 family protein	NA	A0A2H4PQQ8	Staphylococcus_phage	56.4	1.0e-70
WP_095087272.1|905547_906930_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_095087274.1|906953_907796_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	64.3	6.0e-105
>prophage 2
NZ_LT906462	Staphylococcus stepanovicii strain NCTC13839 chromosome 1	2439098	922827	930627	2439098	holin	Staphylococcus_phage(85.71%)	7	NA	NA
WP_095087327.1|922827_923976_-|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	38.3	1.5e-18
WP_095087329.1|924304_925825_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	49.2	4.2e-08
WP_095087332.1|926183_927227_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	48.5	7.9e-91
WP_095087334.1|927234_927867_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	51.4	3.8e-56
WP_095087336.1|927879_929052_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	62.7	7.2e-141
WP_095087338.1|929072_929543_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	79.7	3.9e-53
WP_095087340.1|929622_930627_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	57.8	6.4e-106
>prophage 3
NZ_LT906462	Staphylococcus stepanovicii strain NCTC13839 chromosome 1	2439098	933654	940876	2439098	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_095087347.1|933654_934215_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	55.1	2.5e-51
WP_095087348.1|934211_935171_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	79.3	8.4e-63
WP_095087349.1|935291_936473_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	60.2	1.2e-132
WP_095087351.1|936752_939137_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	79.7	0.0e+00
WP_095087352.1|939159_939471_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	61.6	1.7e-28
WP_095087353.1|939616_940876_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	68.3	1.8e-33
>prophage 4
NZ_LT906462	Staphylococcus stepanovicii strain NCTC13839 chromosome 1	2439098	1082502	1093819	2439098	tRNA	uncultured_Mediterranean_phage(42.86%)	8	NA	NA
WP_095087606.1|1082502_1083498_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.8	2.6e-06
WP_095087609.1|1083514_1084540_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_095087611.1|1084555_1085695_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.9	2.7e-84
WP_016999267.1|1085707_1085971_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.0	2.2e-05
WP_095087612.1|1086141_1088433_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.6	1.4e-31
WP_095087615.1|1088629_1090924_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.7	5.1e-66
WP_095087618.1|1090923_1091442_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.2	7.3e-29
WP_095087622.1|1091629_1093819_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	39.0	9.0e-12
>prophage 5
NZ_LT906462	Staphylococcus stepanovicii strain NCTC13839 chromosome 1	2439098	1724550	1733020	2439098		Synechococcus_phage(33.33%)	9	NA	NA
WP_095088712.1|1724550_1725117_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	1.0e-28
WP_095088716.1|1725113_1726148_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.6	3.6e-67
WP_095088718.1|1726131_1727628_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.2	6.5e-46
WP_095088720.1|1727606_1729796_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.9	2.2e-143
WP_095088722.1|1729788_1730460_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_095088724.1|1730459_1730720_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_095088726.1|1730720_1731422_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	41.2	6.4e-44
WP_095088728.1|1731423_1732551_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_095088730.1|1732537_1733020_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	41.3	2.2e-19
>prophage 6
NZ_LT906462	Staphylococcus stepanovicii strain NCTC13839 chromosome 1	2439098	1971586	1984494	2439098	terminase,integrase	Staphylococcus_phage(54.55%)	17	1967068:1967085	1981253:1981270
1967068:1967085	attL	ATGGAGACGGCGGGAGTT	NA	NA	NA	NA
WP_095089138.1|1971586_1971916_-	RNA polymerase subunit sigma-70	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	38.7	2.2e-15
WP_158245671.1|1972396_1972876_-|terminase	terminase small subunit	terminase	A0A0E3T9M2	Staphylococcus_phage	42.7	1.6e-25
WP_169711999.1|1972986_1973160_-	hypothetical protein	NA	A0A1W6JQJ5	Staphylococcus_phage	63.2	1.2e-12
WP_095090170.1|1973159_1973738_-	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	33.9	8.2e-21
WP_095089142.1|1973734_1974103_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	44.2	4.7e-22
WP_095089144.1|1974188_1974515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095089147.1|1974849_1976517_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	45.4	4.4e-136
WP_095089149.1|1976520_1977372_-	primase C-terminal domain-containing protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	36.9	7.5e-47
WP_095089151.1|1977430_1977625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095089153.1|1977617_1977914_-	DUF1474 family protein	NA	NA	NA	NA	NA
WP_095089155.1|1977914_1978160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095089158.1|1978172_1978385_-	helix-turn-helix transcriptional regulator	NA	A0A0S2GLE9	Bacillus_phage	44.8	1.6e-06
WP_095089160.1|1978585_1979224_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_095089162.1|1979239_1980346_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.1	5.3e-77
WP_095089164.1|1980358_1981138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095089166.1|1981685_1982153_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	75.9	1.5e-57
1981253:1981270	attR	ATGGAGACGGCGGGAGTT	NA	NA	NA	NA
WP_095089168.1|1982163_1984494_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.2e-92
>prophage 7
NZ_LT906462	Staphylococcus stepanovicii strain NCTC13839 chromosome 1	2439098	2036346	2045146	2439098		uncultured_Caudovirales_phage(66.67%)	8	NA	NA
WP_158245673.1|2036346_2037300_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	66.2	1.7e-111
WP_095089279.1|2037494_2037911_-	FixH family protein	NA	NA	NA	NA	NA
WP_095089284.1|2038138_2039110_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	85.0	3.1e-158
WP_095089288.1|2039137_2041243_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	83.0	0.0e+00
WP_095089290.1|2041205_2041604_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	58.3	7.8e-39
WP_095089292.1|2041977_2042850_+	DMT family transporter	NA	NA	NA	NA	NA
WP_095089296.1|2042849_2043350_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	68.6	2.7e-49
WP_095089300.1|2043631_2045146_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	33.3	1.1e-69
