assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900187025.1_49923_F01	NZ_LT906478	Listeria ivanovii subsp. ivanovii strain NCTC11846 chromosome 1	1	451229-451515	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,DEDDh	Orphan	GTTTTAATTACTTATTGTGAAATGTAAAT,GTTTTAATTACTTATTGTGAAATGTAAAT,GTTTTAATTACTTATTNTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	3,4,4	4	Orphan	csa3,DinG,cas3,WYL,DEDDh	NA|133aa|up_5|NZ_LT906478.1_446203_446602_+,NA|128aa|down_7|NZ_LT906478.1_457673_458057_+,NA|480aa|down_9|NZ_LT906478.1_458963_460403_+	NA|217aa|up_9|NZ_LT906478.1_442265_442916_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_LT906478.1_443024_445085_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_LT906478.1_445088_445691_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_LT906478.1_445718_446186_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_LT906478.1_446203_446602_+	NA	NA|214aa|up_4|NZ_LT906478.1_446612_447254_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_LT906478.1_447258_448305_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_LT906478.1_448321_448615_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_LT906478.1_448629_449901_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_LT906478.1_450038_450974_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|196aa|down_0|NZ_LT906478.1_451593_452181_+	cd03577, NTR_TIMP_like, NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling	NA|227aa|down_1|NZ_LT906478.1_452251_452932_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_LT906478.1_452950_453310_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_LT906478.1_453316_453775_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|604aa|down_4|NZ_LT906478.1_454145_455957_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_LT906478.1_456047_456479_+	pfam00582, Usp, Universal stress protein family	NA|271aa|down_6|NZ_LT906478.1_456513_457326_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|down_7|NZ_LT906478.1_457673_458057_+	NA	NA|270aa|down_8|NZ_LT906478.1_458157_458967_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|480aa|down_9|NZ_LT906478.1_458963_460403_+	NA
GCF_900187025.1_49923_F01	NZ_LT906478	Listeria ivanovii subsp. ivanovii strain NCTC11846 chromosome 1	2	460503-461115	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,DEDDh	Orphan	GTTTTAATTACTTATTATGAAATGTAAAT,GTTTTAATTACTTATTATGAAATGTAAAT,GTTTTAATTACTTATTATGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	9,9,9	9	Orphan	csa3,DinG,cas3,WYL,DEDDh	NA|128aa|up_2|NZ_LT906478.1_457673_458057_+,NA|480aa|up_0|NZ_LT906478.1_458963_460403_+,NA	NA|196aa|up_9|NZ_LT906478.1_451593_452181_+	cd03577, NTR_TIMP_like, NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling	NA|227aa|up_8|NZ_LT906478.1_452251_452932_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|up_7|NZ_LT906478.1_452950_453310_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|up_6|NZ_LT906478.1_453316_453775_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|604aa|up_5|NZ_LT906478.1_454145_455957_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_4|NZ_LT906478.1_456047_456479_+	pfam00582, Usp, Universal stress protein family	NA|271aa|up_3|NZ_LT906478.1_456513_457326_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_2|NZ_LT906478.1_457673_458057_+	NA	NA|270aa|up_1|NZ_LT906478.1_458157_458967_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|480aa|up_0|NZ_LT906478.1_458963_460403_+	NA	NA|415aa|down_0|NZ_LT906478.1_461722_462967_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|297aa|down_1|NZ_LT906478.1_463045_463936_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|279aa|down_2|NZ_LT906478.1_463938_464775_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|810aa|down_3|NZ_LT906478.1_464790_467220_+	cd10791, GH38N_AMII_like_1, N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38)	NA|289aa|down_4|NZ_LT906478.1_467233_468100_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|478aa|down_5|NZ_LT906478.1_468077_469511_+	pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase (GH125)	NA|291aa|down_6|NZ_LT906478.1_469609_470482_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|583aa|down_7|NZ_LT906478.1_470603_472352_+	cd07010, cupin_PMI_type_I_N_bac, Phosphomannose isomerase in bacteria and archaea, N-terminal cupin domain	NA|126aa|down_8|NZ_LT906478.1_472436_472814_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_LT906478.1_472958_474374_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_900187025.1_49923_F01	NZ_LT906478	Listeria ivanovii subsp. ivanovii strain NCTC11846 chromosome 1	3	731132-731532	3	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,DEDDh	Orphan	ACAACCAGCTAACGAATTTAGAT	23	0	0	NA	NA	NA	6	6	Orphan	csa3,DinG,cas3,WYL,DEDDh	NA|167aa|up_9|NZ_LT906478.1_721001_721502_+,NA|251aa|down_7|NZ_LT906478.1_739400_740153_+	NA|167aa|up_9|NZ_LT906478.1_721001_721502_+	NA	NA|186aa|up_8|NZ_LT906478.1_721664_722222_+	PRK08118, PRK08118, DNA topology modulation protein	NA|280aa|up_7|NZ_LT906478.1_722352_723192_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|227aa|up_6|NZ_LT906478.1_723313_723994_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|204aa|up_5|NZ_LT906478.1_724079_724691_+	pfam13577, SnoaL_4, SnoaL-like domain	NA|261aa|up_4|NZ_LT906478.1_724810_725593_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|269aa|up_3|NZ_LT906478.1_726695_727502_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|221aa|up_2|NZ_LT906478.1_727450_728113_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|68aa|up_1|NZ_LT906478.1_728279_728483_+	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|335aa|up_0|NZ_LT906478.1_729317_730322_+	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	NA|296aa|down_0|NZ_LT906478.1_732582_733470_+	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|322aa|down_1|NZ_LT906478.1_733469_734435_+	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|203aa|down_2|NZ_LT906478.1_734434_735043_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|207aa|down_3|NZ_LT906478.1_735051_735672_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|419aa|down_4|NZ_LT906478.1_735998_737255_+	COG2262, HflX, GTPases [General function prediction only]	NA|291aa|down_5|NZ_LT906478.1_737331_738204_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|330aa|down_6|NZ_LT906478.1_738208_739198_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|251aa|down_7|NZ_LT906478.1_739400_740153_+	NA	NA|217aa|down_8|NZ_LT906478.1_740174_740825_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|330aa|down_9|NZ_LT906478.1_740871_741861_-	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases
GCF_900187025.1_49923_F01	NZ_LT906478	Listeria ivanovii subsp. ivanovii strain NCTC11846 chromosome 1	4	2706230-2706409	3	PILER-CR	no		csa3,DinG,cas3,WYL,DEDDh	Orphan	TATTATTACTAAGGTCTA	18	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,cas3,WYL,DEDDh	NA|250aa|up_9|NZ_LT906478.1_2692652_2693402_-,NA|262aa|up_8|NZ_LT906478.1_2694099_2694885_-,NA	NA|250aa|up_9|NZ_LT906478.1_2692652_2693402_-	NA	NA|262aa|up_8|NZ_LT906478.1_2694099_2694885_-	NA	NA|136aa|up_7|NZ_LT906478.1_2694950_2695358_-	pfam10916, DUF2712, Protein of unknown function (DUF2712)	NA|396aa|up_6|NZ_LT906478.1_2695551_2696739_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|696aa|up_5|NZ_LT906478.1_2696848_2698936_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|up_4|NZ_LT906478.1_2699001_2699472_-	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|138aa|up_3|NZ_LT906478.1_2699502_2699916_-	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|466aa|up_2|NZ_LT906478.1_2701602_2703000_-	PRK01096, PRK01096, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|160aa|up_1|NZ_LT906478.1_2703014_2703494_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|524aa|up_0|NZ_LT906478.1_2703541_2705113_+	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|215aa|down_0|NZ_LT906478.1_2707213_2707858_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|672aa|down_1|NZ_LT906478.1_2707854_2709870_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|225aa|down_2|NZ_LT906478.1_2709903_2710578_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|147aa|down_3|NZ_LT906478.1_2710586_2711027_-	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|344aa|down_4|NZ_LT906478.1_2711221_2712253_-	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|351aa|down_5|NZ_LT906478.1_2712254_2713307_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|424aa|down_6|NZ_LT906478.1_2713343_2714615_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|94aa|down_7|NZ_LT906478.1_2714676_2714958_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|155aa|down_8|NZ_LT906478.1_2715014_2715479_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|690aa|down_9|NZ_LT906478.1_2715512_2717582_-	COG3711, BglG, Transcriptional antiterminator [Transcription]
GCF_900187025.1_49923_F01	NZ_LT906478	Listeria ivanovii subsp. ivanovii strain NCTC11846 chromosome 1	5	2788445-2788557	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,DEDDh	Orphan	AACGCGAGGATTTAATCCTTCGTGGAAGTTTCAAAA	36	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,DEDDh	NA,NA|74aa|down_2|NZ_LT906478.1_2789305_2789527_-,NA|55aa|down_4|NZ_LT906478.1_2791470_2791635_+,NA|158aa|down_5|NZ_LT906478.1_2791785_2792259_+,NA|214aa|down_6|NZ_LT906478.1_2792294_2792936_-	NA|470aa|up_9|NZ_LT906478.1_2778211_2779621_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|246aa|up_8|NZ_LT906478.1_2779617_2780355_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|681aa|up_7|NZ_LT906478.1_2780358_2782401_-	cd06593, GH31_xylosidase_YicI, alpha-xylosidase YicI-like	NA|451aa|up_6|NZ_LT906478.1_2782643_2783996_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|99aa|up_5|NZ_LT906478.1_2784021_2784318_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|236aa|up_4|NZ_LT906478.1_2784472_2785180_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|81aa|up_3|NZ_LT906478.1_2785292_2785535_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_LT906478.1_2785549_2786146_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_LT906478.1_2786254_2786572_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|578aa|up_0|NZ_LT906478.1_2786601_2788335_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_LT906478.1_2788638_2789103_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|68aa|down_1|NZ_LT906478.1_2789099_2789303_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_LT906478.1_2789305_2789527_-	NA	NA|455aa|down_3|NZ_LT906478.1_2789660_2791025_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|55aa|down_4|NZ_LT906478.1_2791470_2791635_+	NA	NA|158aa|down_5|NZ_LT906478.1_2791785_2792259_+	NA	NA|214aa|down_6|NZ_LT906478.1_2792294_2792936_-	NA	NA|505aa|down_7|NZ_LT906478.1_2793641_2795156_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|314aa|down_8|NZ_LT906478.1_2795268_2796210_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|312aa|down_9|NZ_LT906478.1_2796253_2797189_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain
