The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	2095116	406155	414219	2095116		uncultured_Caudovirales_phage(33.33%)	7	NA	NA
WP_095115550.1|406155_407205_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.6	8.1e-19
WP_095115552.1|407282_407810_+	5'(3')-deoxyribonucleotidase	NA	A0A285PXQ3	Cedratvirus	30.6	1.8e-06
WP_095115554.1|407926_409438_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.8	1.1e-69
WP_095115556.1|409670_410171_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	69.3	6.5e-51
WP_095115558.1|410191_411076_-	DMT family transporter	NA	NA	NA	NA	NA
WP_095115560.1|411752_412151_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	67.4	1.9e-45
WP_095115562.1|412113_414219_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	85.6	0.0e+00
>prophage 2
NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	2095116	476164	529215	2095116	protease,tail,head,integrase,holin,transposase,capsid,terminase,portal	Staphylococcus_phage(63.64%)	70	479402:479429	529764:529791
WP_095115669.1|476164_478504_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	36.8	1.6e-86
WP_095115671.1|478520_478985_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	90.3	5.6e-73
479402:479429	attL	TCAAATCCCGCCGTCTCCACTATATAGC	NA	NA	NA	NA
WP_095115674.1|479482_480532_-|integrase	site-specific integrase	integrase	W5R968	Staphylococcus_phage	79.1	1.5e-158
WP_095115676.1|480652_481795_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0P0ICY9	Lactobacillus_phage	52.2	1.4e-101
WP_095115679.1|481883_482306_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	66.4	1.4e-49
WP_095115681.1|482392_482827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095115676.1|483171_484314_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0P0ICY9	Lactobacillus_phage	52.2	1.4e-101
WP_095115679.1|484402_484825_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	66.4	1.4e-49
WP_095115683.1|484842_485364_-	Abi family protein	NA	NA	NA	NA	NA
WP_095115679.1|485654_486077_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	66.4	1.4e-49
WP_095115676.1|486165_487308_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0P0ICY9	Lactobacillus_phage	52.2	1.4e-101
WP_095115685.1|487355_487646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095115687.1|487651_488110_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A223LGM3	Staphylococcus_phage	62.3	1.3e-50
WP_095115689.1|488422_489052_-	LexA family transcriptional regulator	NA	A0A0N9SKN0	Staphylococcus_phage	90.9	9.3e-103
WP_095115691.1|489205_489433_+	helix-turn-helix transcriptional regulator	NA	Q4ZCB2	Staphylococcus_virus	96.0	5.1e-35
WP_095115693.1|489458_490388_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	69.4	2.5e-80
WP_095115695.1|490380_490953_+	hypothetical protein	NA	A0A2H4J1Z3	uncultured_Caudovirales_phage	47.4	1.4e-25
WP_020219729.1|490964_491198_+	hypothetical protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	47.4	1.1e-11
WP_095115697.1|491183_491519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095115699.1|492078_492783_+	phage repressor protein	NA	A0A223LHJ8	Staphylococcus_phage	81.1	2.8e-108
WP_095115701.1|492909_493119_+	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	62.3	1.0e-18
WP_095115703.1|493134_493314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157728665.1|493389_493542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095115705.1|493534_494020_+	siphovirus Gp157 family protein	NA	A0A1W6JPS5	Staphylococcus_phage	58.1	3.7e-43
WP_095115707.1|494016_494661_+	ERF family protein	NA	D2JGK1	Staphylococcus_phage	90.5	2.3e-104
WP_095115709.1|494653_495070_+	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	72.4	5.4e-51
WP_095115711.1|495081_495750_+	hypothetical protein	NA	A0A1J0MFX6	Staphylococcus_phage	88.3	5.0e-115
WP_095115713.1|495835_496462_-	hypothetical protein	NA	A0A2H4J7C1	uncultured_Caudovirales_phage	36.7	6.1e-30
WP_095115715.1|496524_497238_+	helix-turn-helix domain-containing protein	NA	Q4ZC19	Staphylococcus_virus	63.0	4.6e-74
WP_095115717.1|497242_497590_+	hypothetical protein	NA	Q4ZC18	Staphylococcus_virus	83.5	1.6e-48
WP_095115718.1|497582_498821_+	AAA family ATPase	NA	Q4ZC17	Staphylococcus_virus	81.3	2.8e-188
WP_095115719.1|498817_499036_+	hypothetical protein	NA	A0A1J0MFB5	Staphylococcus_phage	65.3	2.2e-19
WP_095115721.1|499022_499448_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1J0MFP7	Staphylococcus_phage	74.8	9.8e-56
WP_095115723.1|499449_500130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095115725.1|500137_500551_+	DUF3310 domain-containing protein	NA	A0A1J0MFM3	Staphylococcus_phage	56.6	2.9e-28
WP_095115727.1|500540_500759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095115729.1|500755_502153_+	DNA (cytosine-5-)-methyltransferase	NA	A0A0D4DCJ3	Staphylococcus_phage	70.6	1.4e-188
WP_095115732.1|502145_502352_+	hypothetical protein	NA	A0A223LFJ6	Staphylococcus_phage	67.3	3.4e-14
WP_095115734.1|502348_502963_+	nucleoside 2-deoxyribosyltransferase	NA	A0A2R4P8N5	Staphylococcus_phage	72.5	3.2e-76
WP_095115736.1|503507_503891_+	hypothetical protein	NA	A0A2R3ZY10	Staphylococcus_phage	81.1	1.1e-53
WP_095115738.1|503894_504380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095115740.1|504366_504732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095115742.1|504760_505171_+	hypothetical protein	NA	A0A0U1ZWJ6	Staphylococcus_phage	45.7	2.4e-14
WP_095115744.1|505154_505373_+	hypothetical protein	NA	Q4ZC08	Staphylococcus_virus	50.0	6.4e-11
WP_095115746.1|505369_505894_+	dUTP pyrophosphatase	NA	A0A1J0MG68	Staphylococcus_phage	78.2	1.1e-67
WP_095115748.1|505883_506249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095115752.1|506577_506757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095115754.1|506772_507198_+	transcriptional regulator	NA	A0A1J0MFW0	Staphylococcus_phage	85.8	4.1e-62
WP_095115756.1|507381_507702_+	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	68.9	2.0e-37
WP_095115758.1|507819_508125_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	84.2	1.2e-42
WP_095115760.1|508114_509806_+|terminase	terminase large subunit	terminase	A0A2K9VBQ1	Staphylococcus_phage	82.4	1.1e-280
WP_095115762.1|509813_511073_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	78.1	1.2e-189
WP_095115764.1|511029_511803_+|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	70.8	8.5e-98
WP_095115766.1|511815_512967_+|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	85.5	1.2e-185
WP_095115768.1|513063_513342_+|head,tail	phage gp6-like head-tail connector protein	head,tail	R4WAL3	Staphylococcus_phage	56.5	1.1e-23
WP_095115770.1|513354_513693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095118110.1|513689_514112_+	hypothetical protein	NA	A0A2H4JBU3	uncultured_Caudovirales_phage	60.5	3.7e-39
WP_095115772.1|514108_514516_+	hypothetical protein	NA	Q4ZD70	Staphylococcus_phage	61.5	1.4e-38
WP_095115773.1|514527_515154_+|tail	phage tail protein	tail	Q4ZD69	Staphylococcus_phage	84.5	2.4e-95
WP_169712248.1|515233_515407_+	hypothetical protein	NA	Q4ZD68	Staphylococcus_phage	62.3	7.3e-10
WP_095115774.1|515412_515775_+	hypothetical protein	NA	A0A2H4J5B3	uncultured_Caudovirales_phage	81.7	1.2e-49
WP_169712249.1|515810_515978_+	hypothetical protein	NA	A0A2H4J5B6	uncultured_Caudovirales_phage	61.8	3.4e-12
WP_095115775.1|516025_521932_+|tail	phage tail tape measure protein	tail	Q4ZD65	Staphylococcus_phage	54.2	8.3e-294
WP_095115776.1|521931_523446_+|tail	phage tail family protein	tail	A0A1Q1PW27	Staphylococcus_phage	54.8	2.9e-158
WP_095115778.1|523461_527208_+|tail	phage tail protein	tail	A0A1Q1PW30	Staphylococcus_phage	39.1	2.5e-235
WP_157728667.1|527197_527353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095115780.1|527390_527696_+	hypothetical protein	NA	A0A1J0MFP4	Staphylococcus_phage	60.9	6.0e-23
WP_095115782.1|527695_528187_+|holin	phage holin family protein	holin	H9A0W5	Staphylococcus_phage	61.9	1.8e-48
WP_169712250.1|528229_528382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095115784.1|528366_529215_+	SH3 domain-containing protein	NA	M1PRV7	Streptococcus_phage	43.2	1.7e-51
529764:529791	attR	TCAAATCCCGCCGTCTCCACTATATAGC	NA	NA	NA	NA
>prophage 3
NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	2095116	686819	695239	2095116		Synechococcus_phage(33.33%)	9	NA	NA
WP_095116068.1|686819_687302_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.7	2.6e-20
WP_095116069.1|687288_688416_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_095116070.1|688417_689119_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.1	4.7e-47
WP_095116072.1|689122_689383_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_095116073.1|689384_690056_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_095116075.1|690048_692238_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.3	4.2e-134
WP_095116076.1|692216_693638_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.8	4.6e-49
WP_095116077.1|693641_694670_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.0	6.9e-63
WP_095116079.1|694672_695239_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.8	8.3e-26
>prophage 4
NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	2095116	1018879	1030223	2095116	tRNA	uncultured_Mediterranean_phage(57.14%)	8	NA	NA
WP_095116600.1|1018879_1019878_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	9.8e-06
WP_095116602.1|1019890_1020916_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_095116604.1|1020933_1022073_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.3	1.3e-86
WP_095116606.1|1022088_1022352_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	45.7	3.0e-07
WP_095116608.1|1022576_1024856_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	32.7	1.4e-28
WP_095116610.1|1024955_1027241_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	31.2	1.5e-73
WP_095116613.1|1027251_1027770_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.2	2.6e-26
WP_095116615.1|1028033_1030223_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	35.8	5.0e-10
>prophage 5
NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	2095116	1167175	1177101	2095116		Bacillus_phage(42.86%)	11	NA	NA
WP_095116898.1|1167175_1168063_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.2	5.2e-35
WP_095116900.1|1168123_1168648_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_095116902.1|1168742_1169477_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	28.8	1.8e-09
WP_095116904.1|1169460_1170009_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.4	1.0e-09
WP_095116906.1|1170005_1170746_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_095116908.1|1170970_1171696_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.9	2.1e-45
WP_095116910.1|1171679_1173425_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	33.9	2.3e-34
WP_095116912.1|1173783_1174335_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_044358884.1|1174433_1174682_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	53.3	2.3e-17
WP_095116914.1|1174787_1175735_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_095116916.1|1175727_1177101_+	ATP-dependent DNA helicase RecQ	NA	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	33.8	1.4e-55
>prophage 6
NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	2095116	1368287	1375470	2095116	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_095117228.1|1368287_1369553_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	69.2	6.3e-34
WP_095117230.1|1369618_1369930_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	61.2	1.4e-27
WP_095117232.1|1369943_1372355_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	80.8	0.0e+00
WP_095117234.1|1372665_1373853_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	68.3	5.6e-149
WP_095117237.1|1373959_1374913_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	81.8	8.9e-65
WP_095117239.1|1374909_1375470_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	57.3	4.4e-56
>prophage 7
NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	2095116	1380933	1404454	2095116	integrase	Staphylococcus_phage(85.71%)	27	1381148:1381164	1405796:1405812
WP_095117249.1|1380933_1381917_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	67.7	1.1e-121
1381148:1381164	attL	TCGCTGCAAAAGATGAT	NA	NA	NA	NA
WP_095117251.1|1381972_1382434_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	67.8	4.5e-54
WP_095117253.1|1382449_1383631_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	64.9	9.4e-149
WP_095117255.1|1383660_1384290_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	58.1	7.2e-63
WP_095117257.1|1384294_1385341_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	53.6	9.0e-111
WP_095117259.1|1385887_1387375_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	65.0	4.3e-13
WP_095117261.1|1387792_1388656_-	glucosaminidase domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	43.6	2.4e-37
WP_095117264.1|1388857_1389079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157728695.1|1389275_1389743_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	37.4	6.6e-21
WP_095117268.1|1389754_1390195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095117271.1|1390191_1390641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_095117273.1|1390748_1391459_-	transaldolase	NA	M1PR54	Cyanophage	36.0	5.0e-20
WP_095117275.1|1391628_1391931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095117277.1|1391952_1392318_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	55.6	1.1e-28
WP_095117279.1|1392314_1392665_+	CrcB family protein	NA	NA	NA	NA	NA
WP_095117281.1|1392710_1393622_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	71.6	5.5e-80
WP_095117283.1|1393675_1394878_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	81.1	5.0e-182
WP_095117286.1|1395354_1396935_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	75.6	8.2e-241
WP_095117289.1|1397017_1397788_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	60.0	1.5e-83
WP_095117291.1|1397768_1398239_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	51.9	2.4e-39
WP_095117293.1|1398300_1398537_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	72.0	3.7e-28
WP_095117294.1|1398527_1399520_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	48.6	9.2e-89
WP_095117296.1|1399522_1400926_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	49.8	1.9e-127
WP_095117298.1|1401318_1401897_+	Ltp family lipoprotein	NA	A0A097BY93	Leuconostoc_phage	54.7	8.8e-07
WP_095117300.1|1402167_1402353_-	hypothetical protein	NA	A0A1W6JPV9	Staphylococcus_phage	60.0	2.1e-10
WP_095117302.1|1403422_1403776_+	DUF3969 family protein	NA	NA	NA	NA	NA
WP_095118142.1|1404253_1404454_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JAG7	uncultured_Caudovirales_phage	72.9	2.1e-16
1405796:1405812	attR	ATCATCTTTTGCAGCGA	NA	NA	NA	NA
