assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900187005.1_50569_B01	NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	1	79428-80045	1	CRT	no		cas3,cas14j,DEDDh,csa3,DinG,WYL	Orphan	AAGTNCATCNACNAGNAAGTCAGCAAGTACAAGNCT	36	0	0	NA	NA	NA	6	6	Orphan	cas3,cas14j,DEDDh,csa3,DinG,WYL	NA|315aa|up_9|NZ_LT906464.1_65907_66852_+,NA|331aa|up_7|NZ_LT906464.1_68320_69313_+,NA|50aa|up_6|NZ_LT906464.1_70342_70492_+,NA	NA|315aa|up_9|NZ_LT906464.1_65907_66852_+	NA	NA|263aa|up_8|NZ_LT906464.1_67293_68082_+	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|331aa|up_7|NZ_LT906464.1_68320_69313_+	NA	NA|50aa|up_6|NZ_LT906464.1_70342_70492_+	NA	NA|251aa|up_5|NZ_LT906464.1_71336_72089_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|236aa|up_4|NZ_LT906464.1_72329_73037_+	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP	NA|452aa|up_3|NZ_LT906464.1_73049_74405_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|221aa|up_2|NZ_LT906464.1_74418_75081_+	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|393aa|up_1|NZ_LT906464.1_75109_76288_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|245aa|up_0|NZ_LT906464.1_76334_77069_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|400aa|down_0|NZ_LT906464.1_85656_86856_+	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|514aa|down_1|NZ_LT906464.1_86866_88408_+	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1	NA|513aa|down_2|NZ_LT906464.1_88397_89936_+	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|290aa|down_3|NZ_LT906464.1_89937_90807_+	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|797aa|down_4|NZ_LT906464.1_90803_93194_+	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2	NA|503aa|down_5|NZ_LT906464.1_93210_94719_+	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|448aa|down_6|NZ_LT906464.1_94711_96055_+	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB	NA|328aa|down_7|NZ_LT906464.1_96114_97098_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|154aa|down_8|NZ_LT906464.1_97109_97571_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|294aa|down_9|NZ_LT906464.1_97796_98678_+	COG0583, LysR, Transcriptional regulator [Transcription]
GCF_900187005.1_50569_B01	NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	2	820064-822705	2	CRT	no		cas3,cas14j,DEDDh,csa3,DinG,WYL	Orphan	TCNGANTCNGANTCNCTNTCAGAATCNGANTC	32	0	0	NA	NA	NA	33	33	Orphan	cas3,cas14j,DEDDh,csa3,DinG,WYL	NA,NA	NA|233aa|up_9|NZ_LT906464.1_809755_810454_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|203aa|up_8|NZ_LT906464.1_810447_811056_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|147aa|up_7|NZ_LT906464.1_811168_811609_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|up_6|NZ_LT906464.1_811605_812430_+	cd07729, AHL_lactonase_MBL-fold, quorum-quenching N-acyl-homoserine lactonase, MBL-fold metallo-hydrolase domain	NA|138aa|up_5|NZ_LT906464.1_812622_813036_-	pfam06983, 3-dmu-9_3-mt, 3-demethylubiquinone-9 3-methyltransferase	NA|569aa|up_4|NZ_LT906464.1_813223_814930_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|208aa|up_3|NZ_LT906464.1_815216_815840_+	PRK00300, gmk, guanylate kinase; Provisional	NA|70aa|up_2|NZ_LT906464.1_815839_816049_+	COG1758, RpoZ, DNA-directed RNA polymerase, subunit K/omega [Transcription]	NA|402aa|up_1|NZ_LT906464.1_816171_817377_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|803aa|up_0|NZ_LT906464.1_817373_819782_+	COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	NA|163aa|down_0|NZ_LT906464.1_829718_830207_+	PRK14595, PRK14595, peptide deformylase; Provisional	NA|312aa|down_1|NZ_LT906464.1_830199_831135_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|435aa|down_2|NZ_LT906464.1_831131_832436_+	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA|365aa|down_3|NZ_LT906464.1_832437_833532_+	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional	NA|248aa|down_4|NZ_LT906464.1_833538_834282_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|691aa|down_5|NZ_LT906464.1_834278_836351_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|306aa|down_6|NZ_LT906464.1_836416_837334_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|292aa|down_7|NZ_LT906464.1_837637_838513_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|219aa|down_8|NZ_LT906464.1_838512_839169_+	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated	NA|215aa|down_9|NZ_LT906464.1_839168_839813_+	cd07995, TPK, Thiamine pyrophosphokinase
GCF_900187005.1_50569_B01	NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	3	1334306-1334736	1,1,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,cas14j,DEDDh,csa3,DinG,WYL	Orphan	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC,GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC,GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	5,6,6	6	Orphan	cas3,cas14j,DEDDh,csa3,DinG,WYL	NA,NA|29aa|down_6|NZ_LT906464.1_1343946_1344033_-	NA|154aa|up_9|NZ_LT906464.1_1324023_1324485_+	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|201aa|up_8|NZ_LT906464.1_1324702_1325305_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|319aa|up_7|NZ_LT906464.1_1325472_1326429_+	PRK08618, PRK08618, ornithine cyclodeaminase family protein	NA|248aa|up_6|NZ_LT906464.1_1326567_1327311_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|151aa|up_5|NZ_LT906464.1_1327383_1327836_+	TIGR03563, perox_SACOL1771, peroxiredoxin, SACOL1771 subfamily	NA|387aa|up_4|NZ_LT906464.1_1328017_1329178_+	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|536aa|up_3|NZ_LT906464.1_1329167_1330775_+	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|375aa|up_2|NZ_LT906464.1_1330827_1331952_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|206aa|up_1|NZ_LT906464.1_1332090_1332708_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|404aa|up_0|NZ_LT906464.1_1332862_1334074_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|421aa|down_0|NZ_LT906464.1_1334998_1336261_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|298aa|down_1|NZ_LT906464.1_1336614_1337508_+	pfam00912, Transgly, Transglycosylase	NA|373aa|down_2|NZ_LT906464.1_1337980_1339099_-	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins	NA|271aa|down_3|NZ_LT906464.1_1340133_1340946_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|417aa|down_4|NZ_LT906464.1_1340930_1342181_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|185aa|down_5|NZ_LT906464.1_1343217_1343772_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|29aa|down_6|NZ_LT906464.1_1343946_1344033_-	NA	NA|150aa|down_7|NZ_LT906464.1_1344271_1344721_+	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|164aa|down_8|NZ_LT906464.1_1344699_1345191_-	PRK06217, PRK06217, hypothetical protein; Validated	NA|556aa|down_9|NZ_LT906464.1_1345658_1347326_-	PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional
GCF_900187005.1_50569_B01	NZ_LT906464	Staphylococcus muscae strain NCTC13833 chromosome 1	4	1402599-1402766	2,2	CRISPRCasFinder,PILER-CR	no		cas3,cas14j,DEDDh,csa3,DinG,WYL	Orphan	GTTTCACTTATACCTAAAATTACAGAGTACTAAAAC,TGTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC	36,37	2	2	1402701-1402730|1402723-1402748	NZ_LT906464.1_505532-505561|NZ_LT906464.1_505536-505561	NA:NA	2,2	2	Orphan	cas3,cas14j,DEDDh,csa3,DinG,WYL	NA|304aa|up_9|NZ_LT906464.1_1392710_1393622_-,NA|175aa|down_6|NZ_LT906464.1_1410205_1410730_+	NA|304aa|up_9|NZ_LT906464.1_1392710_1393622_-	NA	NA|401aa|up_8|NZ_LT906464.1_1393675_1394878_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|527aa|up_7|NZ_LT906464.1_1395354_1396935_+	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|257aa|up_6|NZ_LT906464.1_1397017_1397788_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|157aa|up_5|NZ_LT906464.1_1397768_1398239_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD	NA|79aa|up_4|NZ_LT906464.1_1398300_1398537_+	pfam01809, Haemolytic, Haemolytic domain	NA|331aa|up_3|NZ_LT906464.1_1398527_1399520_-	TIGR01928, o-succinylbenzoate_synthase, o-succinylbenzoate synthase	NA|468aa|up_2|NZ_LT906464.1_1399522_1400926_-	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)	NA|193aa|up_1|NZ_LT906464.1_1401318_1401897_+	pfam07553, Lipoprotein_Ltp, Host cell surface-exposed lipoprotein	NA|62aa|up_0|NZ_LT906464.1_1402167_1402353_-	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only]	NA|118aa|down_0|NZ_LT906464.1_1403422_1403776_+	pfam13108, DUF3969, Protein of unknown function (DUF3969)	NA|67aa|down_1|NZ_LT906464.1_1404253_1404454_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|191aa|down_2|NZ_LT906464.1_1405645_1406218_-	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]	NA|468aa|down_3|NZ_LT906464.1_1406401_1407805_-	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|310aa|down_4|NZ_LT906464.1_1407820_1408750_-	PRK12435, PRK12435, ferrochelatase; Provisional	NA|347aa|down_5|NZ_LT906464.1_1408784_1409825_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|175aa|down_6|NZ_LT906464.1_1410205_1410730_+	NA	NA|404aa|down_7|NZ_LT906464.1_1410782_1411994_-	pfam05975, EcsB, Bacterial ABC transporter protein EcsB	NA|245aa|down_8|NZ_LT906464.1_1411993_1412728_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|141aa|down_9|NZ_LT906464.1_1412863_1413286_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
